Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 2.6e-170 602.1 324 100.0
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 6.7e-158 560.8 324 93.2
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 3.5e-151 538.5 343 79.0
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 3.9e-150 535.0 325 81.5
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.5e-146 523.1 324 88.0
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 6.5e-145 517.7 326 79.1
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 2.3e-142 509.2 322 78.9
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 1.5e-141 506.5 322 78.3
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 7.4e-141 504.2 322 77.3
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 3.7e-140 501.9 325 77.2
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 3.7e-140 501.9 325 77.2
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 3.7e-140 501.9 325 77.2
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 4.8e-140 501.5 328 75.6
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 2.4e-139 499.2 328 75.3
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 1.2e-138 496.9 328 74.1
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 2.2e-137 492.7 330 73.9
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 6.7e-134 481.1 329 73.9
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.0e-129 467.2 325 70.2
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 4.7e-127 458.4 323 70.6
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.1e-123 447.2 328 68.9
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 2.4e-123 446.0 328 67.4
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 3.1e-123 445.7 319 69.0
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 7.7e-122 441.0 328 69.8
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.7e-121 439.9 319 67.7
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 2.5e-120 436.0 314 70.4
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 3.3e-117 425.6 320 66.9
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.7e-116 423.3 311 67.8
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 8.2e-116 421.0 325 64.0
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 1.8e-115 419.9 320 65.9
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 2.0e-114 416.4 314 68.2
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 2.0e-114 416.4 314 68.2
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 2.0e-114 416.4 314 68.2
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 2.6e-114 416.0 319 65.2
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 3.5e-114 415.6 314 67.5
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 5.9e-114 414.8 314 67.8
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.0e-113 414.1 311 67.5
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 2.9e-113 412.5 319 64.9
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 6.5e-113 411.4 314 67.2
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 1.9e-112 409.8 320 65.3
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 6.8e-110 401.4 319 61.8
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 9.7e-109 397.5 310 65.2
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 1.3e-108 397.1 326 58.6
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 6.3e-108 394.8 328 60.7
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 1.1e-107 394.0 330 59.7
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.1e-107 394.0 326 59.2
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.4e-107 392.9 326 58.3
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 5.3e-107 391.7 334 58.7
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.7e-106 389.4 326 58.6
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.7e-106 389.4 326 58.6
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 5.9e-106 388.3 307 61.9
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 5.0e-105 385.2 325 58.5
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 5.0e-105 385.2 328 58.2
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 8.5e-105 384.4 336 57.1
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 8.5e-105 384.4 336 57.1
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 8.5e-105 384.4 336 57.1
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 1.1e-104 384.0 337 57.0
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 2.5e-104 382.9 309 60.5
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 4.2e-104 382.1 322 61.2
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 5.5e-104 381.7 223 76.2
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 5.5e-104 381.7 329 57.4
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 7.2e-104 381.3 224 75.0
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 9.4e-104 380.9 326 59.2
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 1.6e-103 380.2 276 68.1
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 1.6e-103 380.2 320 59.1
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 2.1e-103 379.8 337 56.4
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 2.7e-103 379.4 337 56.4
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 3.6e-103 379.0 310 59.0
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 2.3e-102 376.3 309 60.8
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 4.0e-102 375.6 224 73.7
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 4.0e-102 375.6 317 58.0
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 6.8e-102 374.8 221 78.3
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 8.8e-102 374.4 224 73.2
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 7.5e-101 371.3 222 72.1
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 1.3e-100 370.5 312 56.7
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 2.2e-100 369.8 335 55.5
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 2.2e-100 369.8 224 71.9
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 3.7e-100 369.0 312 59.0
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 4.8e-100 368.6 301 57.5
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 8.3e-100 367.9 303 59.7
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 2.4e-99 366.3 294 61.6
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 4.1e-99 365.5 314 57.3
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 5.4e-99 365.2 324 56.8
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 7.0e-99 364.8 308 57.8
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 9.1e-99 364.4 298 57.7
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 1.6e-98 363.6 312 58.3
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.0e-98 363.2 224 71.9
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 2.0e-98 363.2 226 71.2
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 2.0e-98 363.2 304 57.9
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 2.7e-98 362.8 306 58.8
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 3.5e-98 362.5 223 73.1
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 4.5e-98 362.1 311 58.2
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 7.7e-98 361.3 292 60.6
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 1.3e-97 360.5 302 58.6
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 1.3e-97 360.5 226 69.9
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.7e-97 360.1 227 70.0
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 1.7e-97 360.1 223 71.7
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 1.7e-97 360.1 307 58.0
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 2.9e-97 359.4 225 72.0
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 3.8e-97 359.0 301 59.1
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 3.8e-97 359.0 225 71.6
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 6.6e-97 358.2 223 71.7
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.5e-96 357.1 225 70.7
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 2.5e-96 356.3 314 55.1
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 3.3e-96 355.9 222 72.5
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 3.3e-96 355.9 228 71.1
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 2.1e-95 353.2 226 67.7
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 3.6e-95 352.4 223 71.7
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 6.1e-95 351.7 333 53.2
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 1.0e-94 350.9 221 71.9
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 3.0e-94 349.4 284 60.6
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 6.8e-94 348.2 229 65.5
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 8.9e-94 347.8 301 55.1
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 1.2e-93 347.4 229 65.1
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 1.5e-93 347.1 223 68.6
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 7.5e-93 344.7 322 55.6
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 1.7e-92 343.6 224 69.2
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 3.2e-91 339.3 223 67.7
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 2.7e-90 336.3 194 79.9
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 4.3e-88 328.9 294 54.4
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 9.5e-88 327.8 199 77.9
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.2e-87 327.4 226 64.6
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 3.6e-87 325.9 307 51.5
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 2.3e-86 323.2 211 68.2
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 3.1e-86 322.8 221 67.4
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 3.7e-84 315.8 211 68.2
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 8.3e-84 314.7 223 61.0
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 7.8e-82 308.1 194 70.1
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.7e-81 307.0 225 60.4
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 1.5e-80 303.9 213 63.8
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 1.9e-80 303.5 196 71.4
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 2.5e-80 303.1 224 62.1
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 5.6e-80 302.0 213 63.8
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 9.5e-80 301.2 226 58.8
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 6.2e-79 298.5 215 58.6
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 8.9e-78 294.7 223 59.6
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.5e-77 293.9 295 48.1
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 5.8e-77 292.0 326 46.0
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 8.3e-76 288.1 217 59.0
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 3.6e-71 272.7 217 57.6
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 3.1e-70 269.6 274 53.6
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.6e-69 266.5 327 45.3
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 6.4e-68 261.9 222 53.6
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 3.2e-67 259.6 218 53.2
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 5.4e-67 258.8 227 54.6
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 1.1e-64 251.1 221 50.7
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 1.5e-64 250.8 153 73.9
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 5.6e-64 248.8 232 51.3
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 8.9e-62 241.5 224 50.0
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 8.9e-62 241.5 211 53.1
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 8.9e-62 241.5 236 47.9
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 1.5e-61 240.7 223 51.1
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 7.6e-61 238.4 223 52.9
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.7e-60 237.3 205 57.1
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 8.4e-60 235.0 220 48.6
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.9e-59 233.8 224 52.2
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 9.6e-56 221.5 222 48.2
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 2.1e-55 220.3 234 47.0
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 3.1e-54 216.5 228 45.2
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 4.0e-54 216.1 222 46.4
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 9.9e-53 211.5 221 46.6
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 4.9e-52 209.1 188 51.1
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.9e-51 207.2 162 62.3
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 2.4e-51 206.8 225 48.9
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 1.2e-50 204.5 197 50.3
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 1.2e-50 204.5 224 46.0
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 1.7e-49 200.7 146 58.9
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 1.9e-48 197.2 309 37.2
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 7.3e-48 195.3 130 66.9
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 1.2e-45 188.0 152 57.9
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 1.2e-42 177.9 137 59.9
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.1e-42 177.2 101 76.2
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.5e-37 161.0 109 67.0
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 4.9e-36 156.0 87 81.6
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 6.0e-34 149.1 95 72.6
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 1.9e-19 100.9 49 89.8
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 3.3e-16 90.1 102 48.0
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 9.4e-11 72.0 73 47.9
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 2.2e-07 60.8 43 60.5


User provided reference genes

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