Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 0.0e+00 1203.0 627 100.0
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.2e-243 846.7 637 72.8
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.1e-236 823.5 627 73.7
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.0e-214 749.6 638 67.2
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 5.9e-179 631.7 678 58.0
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 6.1e-176 621.7 647 59.7
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 2.3e-175 619.8 648 59.4
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 4.4e-174 615.5 647 59.8
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 8.3e-173 611.3 644 59.6
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 4.1e-172 609.0 647 59.4
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.9e-169 600.1 658 58.5
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 2.2e-109 400.6 699 44.3
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 3.6e-107 393.3 707 41.7
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.3e-104 384.8 702 41.7
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 6.9e-103 379.0 684 43.1
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.0e-101 375.2 654 42.2
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 8.5e-101 372.1 681 42.7
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.2e-99 368.2 679 42.0
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 1.4e-98 364.8 658 43.9
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 1.4e-98 364.8 658 43.9
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 2.6e-94 350.5 648 43.4
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.4e-89 333.2 727 39.5
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 9.7e-89 332.0 652 41.9
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 1.7e-85 321.2 700 36.9
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 3.8e-85 320.1 727 37.6
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.6e-83 314.7 672 38.1
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 2.7e-83 313.9 705 37.7
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 5.7e-81 306.2 669 37.7
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 1.6e-78 298.1 688 36.3
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 5.0e-77 293.1 655 36.3
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.7e-64 250.4 580 38.3
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 2.7e-54 217.6 701 33.1
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.5e-52 211.8 738 31.4
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 1.1e-50 205.7 737 32.0
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.5e-46 190.7 778 30.7
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.6e-43 181.8 655 33.3
AT5G52310 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.7e-43 180.3 709 29.2
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 5.2e-42 176.8 683 31.8
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.4e-41 174.1 655 30.7
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 5.8e-41 173.3 662 32.6
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.9e-39 168.3 745 30.1
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 5.4e-39 166.8 673 32.5
BcaC03g14535 Brassica carinata HOM05D004189 ORTHO05D004092 1.6e-38 165.2 668 31.0
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 1.6e-38 165.2 679 30.2
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 2.7e-38 164.5 605 30.7
C02p19870 Brassica napus HOM05D004189 ORTHO05D004092 3.5e-38 164.1 668 30.7
BolC2t08122H Brassica oleracea HOM05D004189 ORTHO05D004092 3.5e-38 164.1 668 30.7
A02p11890 Brassica napus HOM05D004189 ORTHO05D004092 2.3e-37 161.4 636 31.1
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 3.0e-37 161.0 655 32.4
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 9.6e-36 156.0 706 30.2
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 2.1e-35 154.8 663 29.0
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 2.8e-35 154.5 475 34.5
BcaB05g21947 Brassica carinata HOM05D004189 ORTHO05D004092 6.9e-34 149.8 660 29.2
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.4e-33 147.1 670 30.0
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 9.9e-33 146.0 868 25.6
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 6.4e-32 143.3 703 29.0
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 3.2e-31 141.0 363 36.1
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 5.4e-31 140.2 445 32.4
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 9.3e-31 139.4 791 26.2
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 6.0e-30 136.7 429 33.8
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.8e-30 136.3 749 27.6
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.3e-29 135.6 637 29.5
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.7e-29 135.2 802 27.1
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.7e-29 135.2 638 29.2
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 5.1e-29 133.7 533 27.6
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 5.1e-29 133.7 626 27.5
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 6.6e-29 133.3 395 33.4
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.1e-28 132.5 609 29.1
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.1e-28 132.5 661 28.0
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 7.3e-28 129.8 644 29.5
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 8.1e-27 126.3 504 31.3
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 2.4e-26 124.8 587 25.7
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 2.4e-26 124.8 456 31.4
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 4.0e-26 124.0 675 29.2
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 6.9e-26 123.2 99 68.7
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 9.0e-26 122.9 379 32.7
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.2e-25 122.5 393 32.3
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 1.5e-25 122.1 99 67.7
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 2.0e-25 121.7 391 31.7
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 3.4e-25 120.9 626 27.2
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 3.4e-25 120.9 102 65.7
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 3.4e-25 120.9 687 28.2
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 5.8e-25 120.2 296 34.8
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 7.6e-25 119.8 102 64.7
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.7e-24 118.6 441 31.7
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 2.9e-24 117.9 639 27.4
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 2.9e-24 117.9 709 28.6
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.1e-23 115.9 657 29.4
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 7.9e-22 109.8 492 27.2
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 1.0e-21 109.4 682 27.7
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.3e-21 108.2 613 28.4
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 2.3e-21 108.2 339 31.3
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 3.0e-21 107.8 116 57.8
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.0e-21 107.8 692 27.9
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 5.1e-21 107.1 284 35.6
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 8.7e-21 106.3 612 26.0
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 1.1e-20 105.9 228 39.9
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 1.1e-20 105.9 617 28.5
BolC2t10446H Brassica oleracea HOM05D026065 ORTHO05D019960 7.4e-20 103.2 204 44.6
BolC3t14506H Brassica oleracea HOM05D026065 ORTHO05D019960 7.4e-20 103.2 177 46.9
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.6e-19 102.1 617 27.1
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 6.2e-19 100.1 627 26.0
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.4e-18 99.0 558 26.2
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 2.4e-18 98.2 338 33.1
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.1e-18 97.8 562 28.8
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.0e-18 97.4 114 53.5
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 2.0e-17 95.1 615 24.9
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 5.8e-17 93.6 427 29.3
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 9.9e-17 92.8 322 30.7
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.3e-16 92.4 399 27.8
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.7e-16 92.0 278 33.5
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.7e-16 92.0 332 31.0
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 2.9e-16 91.3 289 33.2
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 2.9e-16 91.3 646 28.2
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 3.8e-16 90.9 249 33.3
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 8.4e-16 89.7 367 29.2
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.4e-15 89.0 752 24.6
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.2e-15 87.8 728 26.4
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 7.1e-15 86.7 639 26.0
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.6e-14 85.5 759 26.4
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 3.5e-14 84.3 352 29.3
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 4.6e-14 84.0 113 46.9
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 4.6e-14 84.0 296 30.1
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 1.8e-13 82.0 429 28.9
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 2.3e-13 81.6 297 31.6
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 3.0e-13 81.3 308 29.9
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 3.0e-13 81.3 206 34.5
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 6.7e-13 80.1 182 30.8
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 8.7e-13 79.7 245 33.5
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 8.7e-13 79.7 316 30.1
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 8.7e-13 79.7 302 29.5
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.5e-12 79.0 448 27.9
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.9e-12 78.6 360 26.4
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 4.3e-12 77.4 155 35.5
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 4.3e-12 77.4 609 25.5
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 5.6e-12 77.0 498 24.7
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.3e-11 75.9 333 28.2
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.6e-11 75.5 602 25.1
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.1e-11 75.1 670 26.0
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 2.8e-11 74.7 594 25.6
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 3.7e-11 74.3 646 24.8
BcaB06g26292 Brassica carinata HOM05D023865 ORTHO05D019960 1.1e-10 72.8 159 36.5
BcaNung06066 Brassica carinata HOM05D023865 ORTHO05D019960 1.1e-10 72.8 159 36.5
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 1.4e-10 72.4 326 30.4
CARHR119590 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.8e-10 72.0 161 37.3
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 4.0e-10 70.9 647 24.6
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 6.9e-10 70.1 215 31.2
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 9.0e-10 69.7 280 31.8
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.5e-09 68.9 232 31.9
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.0e-09 68.6 565 24.4
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 2.0e-09 68.6 364 27.2
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 2.6e-09 68.2 757 23.6
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 4.5e-09 67.4 618 25.2
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 5.8e-09 67.0 479 26.1
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.3e-08 65.9 285 29.1
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 4.9e-08 63.9 268 31.0
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 8.4e-08 63.2 181 33.1
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 1.1e-07 62.8 604 24.8
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 1.4e-07 62.4 191 31.4
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.4e-07 62.4 119 37.8
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 2.5e-07 61.6 181 33.1
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 4.2e-07 60.8 191 30.9
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 7.1e-07 60.1 231 28.6
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 7.1e-07 60.1 228 31.6
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 7.1e-07 60.1 97 41.2
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 1.2e-06 59.3 269 29.0
C03p21240 Brassica napus HOM05D026065 ORTHO05D019960 1.6e-06 58.9 64 68.8
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 3.5e-06 57.8 199 30.7


User provided reference genes

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