Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G21220 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 1.6e-145 519.6 305 100.0
AL7G32880 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 1.4e-120 436.8 303 88.1
Carub.0007s2019 Capsella rubella HOM05D006314 ORTHO05D007970 1.2e-116 423.7 301 86.0
Thhalv10025838m.g Eutrema salsugineum HOM05D006314 ORTHO05D007970 5.2e-104 381.7 303 78.9
CARHR227820 Cardamine hirsuta HOM05D006314 ORTHO05D007970 2.2e-102 376.3 300 82.0
AT4G05210 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 1.4e-93 347.1 278 78.4
AL6G48810 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 2.4e-93 346.3 302 66.9
BcaC04g21385 Brassica carinata HOM05D006314 ORTHO05D007970 5.4e-93 345.1 303 74.9
C09p32430 Brassica napus HOM05D006314 ORTHO05D007970 5.4e-93 345.1 303 74.9
BolC9t56088H Brassica oleracea HOM05D006314 ORTHO05D007970 5.4e-93 345.1 303 74.9
A09p25520 Brassica napus HOM05D006314 ORTHO05D007970 3.5e-92 342.4 304 75.3
BcaB01g01893 Brassica carinata HOM05D006314 ORTHO05D007970 1.0e-91 340.9 266 80.5
BraA09t38127Z Brassica rapa HOM05D006314 ORTHO05D007970 1.3e-91 340.5 303 74.9
Aa31LG9G9230 Aethionema arabicum HOM05D006314 ORTHO05D007970 2.3e-88 329.7 303 71.6
THA.LOC104812945 Tarenaya hassleriana HOM05D006314 ORTHO05D007970 1.1e-80 304.3 305 66.9
Ah.14g088200 Amaranthus hybridus HOM05D006314 ORTHO05D007970 2.2e-78 296.6 232 74.6
Hund21374 Selenicereus undatus HOM05D006314 ORTHO05D007970 2.5e-74 283.1 225 71.6
Solyc03g031560.4 Solanum lycopersicum HOM05D006314 ORTHO05D007970 3.1e-72 276.2 276 66.7
CiPaw.09G085200 Carya illinoinensis HOM05D006314 ORTHO05D007970 1.2e-71 274.2 242 63.2
EL10Ac8g19905 Beta vulgaris HOM05D006314 ORTHO05D007970 4.5e-71 272.3 293 60.4
Manes.14G141100 Manihot esculenta HOM05D006314 ORTHO05D007970 4.5e-71 272.3 232 70.3
CiPaw.09G086300 Carya illinoinensis HOM05D006314 ORTHO05D007970 1.3e-70 270.8 303 53.8
Prupe.4G027100 Prunus persica HOM05D006314 ORTHO05D007970 3.8e-70 269.2 221 67.0
GSVIVG01012621001 Vitis vinifera HOM05D006314 ORTHO05D007970 4.9e-70 268.9 246 59.3
Aqoxy5G01372 Aquilegia oxysepala HOM05D006314 ORTHO05D007970 6.4e-70 268.5 268 61.2
Nn1g03656 Nelumbo nucifera HOM05D006314 ORTHO05D007970 1.4e-69 267.3 221 72.4
Sabra04G0024200 Salix brachista HOM05D006314 ORTHO05D007970 1.4e-69 267.3 272 57.4
Cfa021643 Carpinus fangiana HOM05D006314 ORTHO05D007970 7.1e-69 265.0 306 55.6
SEGI_37493 Sequoiadendron giganteum HOM05D006314 ORTHO05D007970 1.6e-68 263.8 220 63.2
ECA236G4636 Erigeron canadensis HOM05D006314 ORTHO05D007970 7.9e-68 261.5 223 65.5
Gorai.010G176200 Gossypium raimondii HOM05D006314 ORTHO05D007970 1.3e-67 260.8 255 58.0
PGR031G0385 Punica granatum HOM05D006314 ORTHO05D007970 1.3e-67 260.8 268 65.3
CANSAT56G1066 Cannabis sativa HOM05D006314 ORTHO05D007970 2.3e-67 260.0 231 71.4
CDE05G2602 Ceratophyllum demersum HOM05D006314 ORTHO05D007970 3.9e-67 259.2 230 71.7
Gohir.A06G145000 Gossypium hirsutum HOM05D006314 ORTHO05D007970 3.9e-67 259.2 266 51.9
Potri.004G039400 Populus trichocarpa HOM05D006314 ORTHO05D007970 1.5e-66 257.3 232 62.1
QL05p075316 Quercus lobata HOM05D006314 ORTHO05D007970 1.6e-65 253.8 272 55.5
Sp6g03780 Schrenkiella parvula HOM05D006314 ORTHO05D007970 2.1e-65 253.4 269 66.5
FAN21G1433 Fragaria x ananassa HOM05D006314 ORTHO05D007970 1.4e-64 250.8 244 62.7
Actinidia26953 Actinidia chinensis HOM05D006314 ORTHO05D007970 4.0e-64 249.2 161 72.7
SalBow8G4748 Salvia bowleyana HOM05D006314 ORTHO05D007970 9.0e-64 248.1 227 62.1
ATR0618G448 Amborella trichopoda HOM05D006314 ORTHO05D007970 2.0e-63 246.9 230 64.3
Ciclev10018286m.g Citrus clementina HOM05D006314 ORTHO05D007970 2.6e-63 246.5 233 64.4
COL.COLO4_31719 Corchorus olitorius HOM05D006314 ORTHO05D007970 3.4e-63 246.1 221 60.2
SGA_v2.0_scaffold7G03887 Striga asiatica HOM05D006314 ORTHO05D007970 3.4e-63 246.1 223 60.1
Haze_06729 Corylus avellana HOM05D006314 ORTHO05D007970 4.5e-63 245.7 164 70.1
HPP92_009395 Vanilla planifolia HOM05D006314 ORTHO05D007970 4.5e-63 245.7 266 60.2
Haze_06726 Corylus avellana HOM05D006314 ORTHO05D007970 2.9e-62 243.0 172 65.7
Eucgr.D00832 Eucalyptus grandis HOM05D006314 ORTHO05D007970 8.4e-62 241.5 254 64.6
Actinidia05538 Actinidia chinensis HOM05D006314 ORTHO05D007970 7.1e-61 238.4 234 67.1
CAN.G404.73 Capsicum annuum HOM05D006314 ORTHO05D007970 7.1e-61 238.4 253 55.3
HPP92_009390 Vanilla planifolia HOM05D006314 ORTHO05D007970 7.1e-61 238.4 266 57.9
Duzib235G0913 Durio zibethinus HOM05D006314 ORTHO05D007970 1.2e-60 237.7 309 45.6
Lsat_1_v5_gn_7_17861 Lactuca sativa HOM05D006314 ORTHO05D007970 1.6e-60 237.3 308 50.6
CsaV3_6G049280 Cucumis sativus L. HOM05D006314 ORTHO05D007970 3.5e-60 236.1 278 52.9
MD05G1340500 Malus domestica HOM05D006314 ORTHO05D007970 3.5e-60 236.1 255 54.9
HanXRQChr05g0130041 Helianthus annuus HOM05D006314 ORTHO05D007970 6.0e-60 235.3 159 67.9
Migut.M01276 Erythranthe guttata HOM05D006314 ORTHO05D007970 3.9e-59 232.6 229 58.5
DCAR_004187 Daucus carota HOM05D006314 ORTHO05D007970 8.7e-59 231.5 223 65.9
Cpa.g.sc81.24 Carica papaya HOM05D006314 ORTHO05D007970 2.5e-58 229.9 221 64.7
FAN25G2977 Fragaria x ananassa HOM05D006314 ORTHO05D007970 2.8e-57 226.5 275 56.0
RcHm_v2.0_Chr5g0004131 Rosa chinensis HOM05D006314 ORTHO05D007970 1.8e-56 223.8 256 56.6
ClCG01G022220 Citrullus lanatus HOM05D006314 ORTHO05D007970 3.1e-56 223.0 253 60.9
Glyma.01G240700 Glycine max HOM05D006314 ORTHO05D007970 9.0e-56 221.5 225 60.0
FvH4_3g02730 Fragaria vesca HOM05D006314 ORTHO05D007970 2.6e-55 219.9 231 61.5
Phvul.002G049200 Phaseolus vulgaris HOM05D006314 ORTHO05D007970 2.6e-55 219.9 221 61.1
VMungo1215G0781 Vigna mungo HOM05D006314 ORTHO05D007970 2.6e-55 219.9 221 60.2
MELO3C007369.2 Cucumis melo HOM05D006314 ORTHO05D007970 7.6e-55 218.4 258 55.8
Mapoly0013s0096 Marchantia polymorpha HOM05D006314 ORTHO05D007970 1.3e-54 217.6 170 57.1
vmacro03713 Vaccinium macrocarpon HOM05D006314 ORTHO05D007970 3.8e-54 216.1 197 69.0
Sopen03g005440 Solanum pennellii HOM05D006314 ORTHO05D007970 8.4e-54 214.9 262 59.9
TWI38G0264 Tripterygium wilfordii HOM05D006314 ORTHO05D007970 1.1e-53 214.5 279 53.0
Lj1g0010466 Lotus japonicus HOM05D006314 ORTHO05D007970 2.1e-52 210.3 221 58.4
Medtr7g047630 Medicago truncatula HOM05D006314 ORTHO05D007970 2.1e-52 210.3 251 52.6
Medtr7g451810 Medicago truncatula HOM05D006314 ORTHO05D007970 2.1e-52 210.3 251 52.6
Cc00_g17320 Coffea canephora HOM05D006314 ORTHO05D007970 3.5e-52 209.5 226 60.6
TPR.G10185 Trifolium pratense HOM05D006314 ORTHO05D007970 3.5e-52 209.5 228 55.7
Ca_07429_v3 Cicer arietinum L. HOM05D006314 ORTHO05D007970 6.7e-51 205.3 229 56.8
Nitab4.5_0004428g0040 Nicotiana tabacum HOM05D006314 ORTHO05D007970 8.7e-51 204.9 307 40.1
MBI02_g34312_MAGBIO Magnolia biondii HOM05D006314 ORTHO05D007970 1.5e-50 204.1 278 48.9
Lalb_Chr16g0376341 Lupinus albus HOM05D006314 ORTHO05D007970 5.7e-50 202.2 230 59.6
Gohir.D06G151200 Gossypium hirsutum HOM05D006314 ORTHO05D007970 7.4e-50 201.8 198 54.0
CBR_g20160 Chara braunii HOM05D006314 ORTHO05D007970 9.7e-50 201.4 225 59.6
Oeu002711.1 Olea europaea HOM05D006314 ORTHO05D007970 6.3e-49 198.7 161 57.8
PSO541G6217 Papaver somniferum HOM05D006314 ORTHO05D007970 1.2e-47 194.5 252 42.5
Psat3g152680 Pisum sativum HOM05D006314 ORTHO05D007970 1.2e-47 194.5 224 61.6
Lj1A1224T36 Lonicera japonica HOM05D006314 ORTHO05D007970 2.0e-47 193.7 212 59.4
PSO675G3227 Papaver somniferum HOM05D006314 ORTHO05D007970 3.4e-47 193.0 252 42.5
AUR62012635 Chenopodium quinoa HOM05D006314 ORTHO05D007970 4.5e-47 192.6 286 50.3
PGSC0003DMG400005049 Solanum tuberosum HOM05D006314 ORTHO05D007970 1.1e-45 188.0 205 67.3
Thecc.06G213300 Theobroma cacao HOM05D006314 ORTHO05D007970 1.9e-45 187.2 234 56.8
AagrBONN_evm.TU.Sc2ySwM_228.2540 Anthoceros agrestis HOM05D006314 ORTHO05D007970 4.2e-45 186.0 249 51.4
Rhsim13G0158200 Rhododendron simsii HOM05D006314 ORTHO05D007970 5.5e-45 185.7 161 55.9
AUR62022021 Chenopodium quinoa HOM05D006314 ORTHO05D007970 7.2e-45 185.3 258 53.1
Zm00001eb306890 Zea mays HOM05D006314 ORTHO05D007970 1.8e-43 180.6 230 56.5
arahy.Tifrunner.gnm1.ann1.937J55 Arachis hypogaea HOM05D006314 ORTHO05D007970 1.1e-42 177.9 132 66.7
arahy.Tifrunner.gnm1.ann1.PEH28W Arachis hypogaea HOM05D006314 ORTHO05D007970 1.1e-42 177.9 132 66.7
Glyma.11G002900 Glycine max HOM05D006314 ORTHO05D007970 1.9e-42 177.2 161 59.0
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 3.3e-42 176.4 144 61.1
Sc05g0008810 Simmondsia chinensis HOM05D006314 ORTHO05D007970 1.3e-41 174.5 255 49.4
Pp3c4_25780 Physcomitrium patens HOM05D006314 ORTHO05D007970 6.3e-41 172.2 225 56.4
Dinv17838 Davidia involucrata HOM05D006314 ORTHO05D007970 3.1e-40 169.9 214 59.3
Hma1.2p1_0729F.1_g209630 Hydrangea macrophylla HOM05D006314 ORTHO05D007970 6.5e-38 162.2 123 64.2
Nn5g27983 Nelumbo nucifera HOM05D006314 ORTHO05D007970 1.2e-36 157.9 114 65.8
Nitab4.5_0000900g0100 Nicotiana tabacum HOM05D006314 ORTHO05D007970 3.0e-35 153.3 308 34.1
PRCOL_00005452 Prasinoderma coloniale HOM05D006314 ORTHO05D007970 4.8e-33 146.0 172 40.7
TAR627G0699 Trochodendron aralioides HOM05D006314 ORTHO05D007970 8.2e-33 145.2 109 61.5
CSS0045332 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 5.9e-31 139.0 118 55.9
SMO004G0010 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 6.7e-27 125.6 122 50.0
Sed0025568 Sechium edule HOM05D006314 ORTHO05D007970 3.1e-24 116.7 215 44.7
Peaxi162Scf00781g00047 Petunia axillaris HOM05D006314 ORTHO05D007970 1.2e-23 114.8 158 41.1
CSS0018641 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 9.7e-18 95.1 104 74.0
SMO361G0013 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 7.7e-15 85.5 109 44.0
MSTRG.16127 Avicennia marina HOM05D006314 ORTHO05D007970 1.1e-13 81.6 102 43.1
A01p12600 Brassica napus HOM05D000022 ORTHO05D020144 2.6e-10 70.5 60 65.0
FAN25G3594 Fragaria x ananassa HOM05D006314 ORTHO05D007970 4.4e-10 69.7 43 72.1
Os07g0134400 Oryza sativa ssp. japonica HOM05D006314 ORTHO05D007970 4.4e-10 69.7 102 64.7
Sp7g19320 Schrenkiella parvula HOM05D006314 ORTHO05D007970 5.7e-10 69.3 152 35.5
C01p15170 Brassica napus HOM05D000022 ORTHO05D020144 1.4e-08 64.7 68 55.9
BraA01t01203Z Brassica rapa HOM05D006314 ORTHO05D020144 3.1e-08 63.5 50 72.0
Medtr7g047660 Medicago truncatula HOM05D052963 ORTHO05D007970 7.0e-08 62.4 51 58.8
BolC1t01466H Brassica oleracea HOM05D000022 ORTHO05D020144 2.7e-07 60.5 53 62.3
MD10G1314000 Malus domestica HOM05D006314 ORTHO05D007970 1.0e-06 58.5 41 61.0
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 1.3e-06 58.2 151 29.1


User provided reference genes

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