Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 2.4e-75 285.4 142 100.0
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 8.2e-68 260.4 143 93.0
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 1.4e-67 259.6 142 90.8
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 2.0e-66 255.8 143 90.9
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 3.4e-66 255.0 142 88.7
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 1.3e-65 253.1 142 89.4
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 1.3e-65 253.1 142 88.0
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 1.3e-65 253.1 143 92.3
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 8.4e-65 250.4 142 86.6
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 8.4e-65 250.4 142 86.6
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 8.4e-65 250.4 142 86.6
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 2.1e-63 245.7 142 88.0
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 1.8e-59 232.6 146 84.2
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 3.7e-52 208.4 180 64.4
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 7.9e-47 190.7 142 66.9
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 2.8e-36 155.6 150 57.3
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 7.0e-27 124.4 156 47.4
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 5.9e-26 121.3 148 47.3
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 5.9e-26 121.3 148 47.3
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 1.3e-25 120.2 133 49.6
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 2.9e-25 119.0 147 48.3
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 3.8e-25 118.6 155 47.7
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 5.0e-25 118.2 148 48.0
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 1.6e-23 113.2 83 66.3
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 2.1e-23 112.8 80 68.8
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 2.7e-23 112.5 143 46.9
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 4.7e-23 111.7 100 55.0
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 1.0e-22 110.5 84 64.3
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 1.4e-22 110.2 73 69.9
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.8e-22 109.8 79 67.1
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.8e-22 109.8 79 67.1
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 1.8e-22 109.8 81 66.7
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 1.8e-22 109.8 73 69.9
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 1.8e-22 109.8 73 69.9
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 2.3e-22 109.4 78 67.9
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 3.0e-22 109.0 144 47.2
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 3.0e-22 109.0 73 69.9
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 3.0e-22 109.0 73 69.9
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-22 108.6 70 68.6
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-22 108.6 70 68.6
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-22 108.6 70 68.6
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-22 108.6 70 68.6
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-22 108.6 70 68.6
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-22 108.6 70 68.6
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-22 108.6 70 68.6
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-22 108.6 70 68.6
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-22 108.6 70 68.6
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-22 108.6 70 68.6
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-22 108.6 70 68.6
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-22 108.6 70 68.6
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 4.0e-22 108.6 70 68.6
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 4.0e-22 108.6 73 68.5
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 4.0e-22 108.6 78 64.1
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 5.2e-22 108.2 70 67.1
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 5.2e-22 108.2 70 68.6
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 5.2e-22 108.2 80 65.0
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 5.2e-22 108.2 70 68.6
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 6.8e-22 107.8 73 68.5
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 8.8e-22 107.5 127 44.1
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 8.8e-22 107.5 71 71.8
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 1.2e-21 107.1 83 62.7
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 2.0e-21 106.3 82 64.6
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 2.6e-21 105.9 78 64.1
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 3.4e-21 105.5 76 67.1
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 3.4e-21 105.5 71 70.4
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 4.4e-21 105.1 71 67.6
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 5.7e-21 104.8 84 58.3
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 5.7e-21 104.8 128 43.0
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 7.5e-21 104.4 76 65.8
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 9.8e-21 104.0 76 65.8
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 9.8e-21 104.0 128 43.8
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 9.8e-21 104.0 62 74.2
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 9.8e-21 104.0 62 74.2
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 9.8e-21 104.0 62 74.2
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 2.8e-20 102.4 66 71.2
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 8.3e-20 100.9 70 64.3
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 8.3e-20 100.9 70 64.3
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 8.3e-20 100.9 70 64.3
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 8.3e-20 100.9 70 64.3
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 8.3e-20 100.9 71 67.6
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 8.3e-20 100.9 71 69.0
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.1e-19 100.5 70 64.3
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 1.8e-19 99.8 84 57.1
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 1.8e-19 99.8 127 41.7
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 3.1e-19 99.0 70 67.1
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 7.0e-19 97.8 78 60.3
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 3.5e-18 95.5 70 60.0
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 1.0e-17 94.0 78 55.1
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 8.6e-17 90.9 70 60.0
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 4.2e-16 88.6 59 72.9
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 4.2e-16 88.6 59 72.9
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 4.2e-16 88.6 59 72.9
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 4.2e-16 88.6 59 72.9
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 1.6e-15 86.7 55 70.9
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 1.6e-15 86.7 65 61.5
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-15 86.7 65 61.5
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 2.1e-15 86.3 78 57.7
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 3.6e-15 85.5 58 69.0
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 3.6e-15 85.5 58 69.0
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 3.6e-15 85.5 58 69.0
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 3.6e-15 85.5 58 69.0
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 3.6e-15 85.5 58 69.0
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.1e-15 84.7 92 51.1
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 8.0e-15 84.3 62 59.7
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 2.3e-14 82.8 58 67.2
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 6.8e-14 81.3 51 68.6
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 2.0e-13 79.7 60 58.3
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 3.4e-13 79.0 70 54.3
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 4.4e-13 78.6 73 53.4
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 1.3e-12 77.0 76 53.9
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.8e-12 75.9 59 59.3
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 8.3e-12 74.3 114 38.6
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 4.1e-11 72.0 52 59.6
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 3.5e-10 68.9 103 39.8
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 1.0e-09 67.4 55 54.5
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.3e-09 67.0 49 59.2
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.3e-09 67.0 49 59.2
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 5.0e-09 65.1 51 58.8
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 8.6e-09 64.3 72 48.6
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 3.3e-08 62.4 41 68.3
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 4.7e-07 58.5 35 68.6
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 4.7e-07 58.5 35 68.6
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 4.7e-07 58.5 35 68.6
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 6.1e-07 58.2 37 67.6
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 1.0e-06 57.4 63 44.4
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.0e-06 57.4 63 44.4
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.4e-06 57.0 72 44.4
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.0e-06 55.8 72 43.1
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 4.0e-06 55.5 39 66.7
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 4.0e-06 55.5 39 66.7
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 6.8e-06 54.7 40 62.5


User provided reference genes

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