Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G09250 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.2e-197 693.0 350 100.0
AT4G09200 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 8.4e-191 670.2 398 87.9
AT4G09310 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 8.4e-191 670.2 398 87.9
Prupe.1G552200 Prunus persica HOM05D003906 ORTHO05D004776 1.2e-72 277.7 404 42.1
Gohir.D09G112300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 4.6e-72 275.8 409 43.0
Gorai.006G130100 Gossypium raimondii HOM05D003906 ORTHO05D004776 6.0e-72 275.4 409 43.0
FvH4_5g32270 Fragaria vesca HOM05D003906 ORTHO05D004776 1.8e-71 273.9 409 42.1
Sp1g30230 Schrenkiella parvula HOM05D003906 ORTHO05D004776 6.7e-71 271.9 415 42.9
Thecc.08G187700 Theobroma cacao HOM05D003906 ORTHO05D004776 6.7e-71 271.9 389 44.0
AT4G09340 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 3.3e-70 269.6 403 42.7
Gohir.A09G115500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 7.4e-70 268.5 409 42.5
AL6G42970 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 4.8e-69 265.8 399 41.1
Thhalv10001818m.g Eutrema salsugineum HOM05D003906 ORTHO05D004776 2.4e-68 263.5 409 40.8
BcaB01g02792 Brassica carinata HOM05D003906 ORTHO05D004776 3.1e-68 263.1 402 41.5
Gohir.D05G252500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 4.0e-68 262.7 413 41.4
AT1G35470 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 6.9e-68 261.9 410 41.5
BraA09t38715Z Brassica rapa HOM05D003906 ORTHO05D004776 6.9e-68 261.9 410 41.0
BcaC08g43739 Brassica carinata HOM05D003906 ORTHO05D004776 9.0e-68 261.5 410 40.7
BolC6t36252H Brassica oleracea HOM05D003906 ORTHO05D004776 9.0e-68 261.5 410 40.7
Gohir.A05G251300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 9.0e-68 261.5 413 41.2
A09p31780 Brassica napus HOM05D003906 ORTHO05D004776 1.2e-67 261.2 410 41.0
Duzib177G0129 Durio zibethinus HOM05D003906 ORTHO05D004776 1.2e-67 261.2 407 41.3
Gorai.009G264700 Gossypium raimondii HOM05D003906 ORTHO05D004776 1.5e-67 260.8 413 41.2
MBI06_g32171_MAGBIO Magnolia biondii HOM05D003906 ORTHO05D004776 1.5e-67 260.8 382 43.2
C06p11170 Brassica napus HOM05D003906 ORTHO05D004776 3.4e-67 259.6 410 40.5
BcaB07g33091 Brassica carinata HOM05D003906 ORTHO05D004776 4.5e-67 259.2 410 40.5
BcaB03g13663 Brassica carinata HOM05D003906 ORTHO05D004776 5.8e-67 258.8 407 42.0
arahy.Tifrunner.gnm1.ann1.NDRV14 Arachis hypogaea HOM05D003906 ORTHO05D004776 7.6e-67 258.5 408 39.7
CiPaw.08G001800 Carya illinoinensis HOM05D003906 ORTHO05D004776 7.6e-67 258.5 403 40.0
Dinv41741 Davidia involucrata HOM05D003906 ORTHO05D004776 7.6e-67 258.5 410 41.2
FAN18G2269 Fragaria x ananassa HOM05D003906 ORTHO05D004776 1.3e-66 257.7 440 39.1
Atru.chr2.1825 Acer truncatum HOM05D003906 ORTHO05D004776 1.7e-66 257.3 405 41.0
QL02p025746 Quercus lobata HOM05D003906 ORTHO05D004776 2.9e-66 256.5 409 39.6
THA.LOC104816477 Tarenaya hassleriana HOM05D003906 ORTHO05D004776 2.9e-66 256.5 406 40.1
Ciclev10001078m.g Citrus clementina HOM05D003906 ORTHO05D004776 8.4e-66 255.0 402 39.8
A05p23780 Brassica napus HOM05D003906 ORTHO05D004776 1.4e-65 254.2 401 40.9
BraA05t21248Z Brassica rapa HOM05D003906 ORTHO05D004776 1.4e-65 254.2 401 40.9
MELO3C022219.2 Cucumis melo HOM05D003906 ORTHO05D004776 1.9e-65 253.8 404 40.1
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 2.5e-65 253.4 440 37.7
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 3.2e-65 253.1 395 39.7
BolC5t32471H Brassica oleracea HOM05D003906 ORTHO05D004776 4.2e-65 252.7 401 40.9
BcaC01g04722 Brassica carinata HOM05D003906 ORTHO05D004776 5.5e-65 252.3 403 40.7
BolC3t15761H Brassica oleracea HOM05D003906 ORTHO05D004776 5.5e-65 252.3 403 40.7
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 5.5e-65 252.3 390 41.3
Carub.0006s2784 Capsella rubella HOM05D003906 ORTHO05D004776 7.1e-65 251.9 405 40.0
CsaV3_5G040450 Cucumis sativus L. HOM05D003906 ORTHO05D004776 9.3e-65 251.5 404 39.9
Dinv04083 Davidia involucrata HOM05D003906 ORTHO05D004776 9.3e-65 251.5 410 41.0
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 9.3e-65 251.5 396 41.4
Manes.18G104100 Manihot esculenta HOM05D003906 ORTHO05D004776 9.3e-65 251.5 409 39.9
Sp6g08200 Schrenkiella parvula HOM05D003906 ORTHO05D004776 1.2e-64 251.1 403 40.2
Hund16785 Selenicereus undatus HOM05D003906 ORTHO05D004776 1.2e-64 251.1 408 38.5
Manes.02G196200 Manihot esculenta HOM05D003906 ORTHO05D004776 1.6e-64 250.8 406 39.4
Phvul.011G000900 Phaseolus vulgaris HOM05D003906 ORTHO05D004776 1.6e-64 250.8 398 39.2
Actinidia23018 Actinidia chinensis HOM05D003906 ORTHO05D004776 2.1e-64 250.4 409 39.9
BraA03t12055Z Brassica rapa HOM05D003906 ORTHO05D004776 2.7e-64 250.0 403 40.4
CSS0022245 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 2.7e-64 250.0 413 39.2
CSS0049725 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 2.7e-64 250.0 413 39.2
A03p28530 Brassica napus HOM05D003906 ORTHO05D004776 3.5e-64 249.6 403 40.2
VMungo1127G1719 Vigna mungo HOM05D003906 ORTHO05D004776 4.6e-64 249.2 398 38.9
Eucgr.F02579 Eucalyptus grandis HOM05D003906 ORTHO05D004776 7.9e-64 248.4 404 39.4
BcaC05g27736 Brassica carinata HOM05D003906 ORTHO05D004776 1.0e-63 248.1 402 40.8
C05p37240 Brassica napus HOM05D003906 ORTHO05D004776 1.0e-63 248.1 402 40.8
Glyma.12G000900 Glycine max HOM05D003906 ORTHO05D004776 1.0e-63 248.1 398 39.2
Aa31LG6G8750 Aethionema arabicum HOM05D003906 ORTHO05D004776 1.3e-63 247.7 407 38.6
AL1G50340 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 1.3e-63 247.7 438 39.0
Carub.0001s3308 Capsella rubella HOM05D003906 ORTHO05D004776 1.8e-63 247.3 410 39.8
Sed0011736 Sechium edule HOM05D003906 ORTHO05D004776 1.8e-63 247.3 408 39.5
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 1.8e-63 247.3 409 38.6
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 2.3e-63 246.9 414 38.6
Glyma.08G238500 Glycine max HOM05D003906 ORTHO05D004776 3.0e-63 246.5 398 39.2
MD08G1220100 Malus domestica HOM05D003906 ORTHO05D004776 3.9e-63 246.1 405 38.5
FAN04G2445 Fragaria x ananassa HOM05D003906 ORTHO05D004776 5.1e-63 245.7 409 38.9
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 1.1e-62 244.6 408 37.5
PGR042G0234 Punica granatum HOM05D003906 ORTHO05D004776 2.5e-62 243.4 406 39.2
Lj3g0000257 Lotus japonicus HOM05D003906 ORTHO05D004776 3.3e-62 243.0 408 40.0
Hma1.2p1_0342F.1_g130710 Hydrangea macrophylla HOM05D003906 ORTHO05D004776 4.3e-62 242.7 404 39.9
Peaxi162Scf00076g00225 Petunia axillaris HOM05D003906 ORTHO05D004776 4.3e-62 242.7 412 38.8
TPR.G34173 Trifolium pratense HOM05D003906 ORTHO05D004776 4.3e-62 242.7 398 38.2
Aqoxy5G02955 Aquilegia oxysepala HOM05D003906 ORTHO05D004776 1.3e-61 241.1 402 37.8
Potri.013G108400 Populus trichocarpa HOM05D003906 ORTHO05D004776 3.7e-61 239.6 404 39.1
Solyc03g033380.3 Solanum lycopersicum HOM05D003906 ORTHO05D004776 3.7e-61 239.6 413 38.3
CARHR034240 Cardamine hirsuta HOM05D003906 ORTHO05D004776 4.8e-61 239.2 295 46.1
Ca_19699_v3 Cicer arietinum L. HOM05D003906 ORTHO05D004776 1.1e-60 238.0 398 37.7
CAN.G354.51 Capsicum annuum HOM05D003906 ORTHO05D004776 2.4e-60 236.9 413 36.6
Sopen03g006150 Solanum pennellii HOM05D003906 ORTHO05D004776 2.4e-60 236.9 412 37.9
Lalb_Chr01g0000071 Lupinus albus HOM05D003906 ORTHO05D004776 3.1e-60 236.5 400 38.5
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 4.1e-60 236.1 409 37.2
SalBow7G1596 Salvia bowleyana HOM05D003906 ORTHO05D004776 9.0e-60 235.0 412 37.1
PSO017G0948 Papaver somniferum HOM05D003906 ORTHO05D004776 1.2e-59 234.6 408 37.3
arahy.Tifrunner.gnm1.ann1.AC170Q Arachis hypogaea HOM05D003906 ORTHO05D004776 1.5e-59 234.2 460 35.2
Ah.05g178390 Amaranthus hybridus HOM05D003906 ORTHO05D004776 2.6e-59 233.4 413 37.3
DCAR_001451 Daucus carota HOM05D003906 ORTHO05D004776 7.7e-59 231.9 382 38.5
C03p34490 Brassica napus HOM05D003906 ORTHO05D004776 1.7e-58 230.7 293 46.8
TAR628G0992 Trochodendron aralioides HOM05D003906 ORTHO05D004776 2.2e-58 230.3 404 37.6
Oeu051791.1 Olea europaea HOM05D003906 ORTHO05D004776 2.9e-58 229.9 413 38.0
Rhsim06G0114100 Rhododendron simsii HOM05D003906 ORTHO05D004776 2.9e-58 229.9 366 40.2
unitig_749.g13881 Utricularia gibba HOM05D003906 ORTHO05D004776 5.0e-58 229.2 407 36.1
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 1.1e-57 228.0 406 36.9
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.9e-57 227.3 404 35.9
MSTRG.1555 Avicennia marina HOM05D003906 ORTHO05D004776 3.2e-57 226.5 405 37.0
Cc10_g10260 Coffea canephora HOM05D003906 ORTHO05D004776 5.5e-57 225.7 413 38.7
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 1.2e-56 224.6 409 37.4
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 1.2e-56 224.6 411 38.0
ECA247G1339 Erigeron canadensis HOM05D003906 ORTHO05D004776 6.1e-56 222.2 411 37.7
Migut.C01295 Erythranthe guttata HOM05D003906 ORTHO05D004776 7.9e-56 221.9 412 36.2
Duzib116G0916 Durio zibethinus HOM05D003906 ORTHO05D004776 1.0e-55 221.5 414 38.6
Oeu064077.1 Olea europaea HOM05D003906 ORTHO05D004776 1.0e-55 221.5 414 37.4
Lsat_1_v5_gn_1_12460 Lactuca sativa HOM05D003906 ORTHO05D004776 2.3e-55 220.3 417 36.9
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 6.7e-55 218.8 406 35.5
Haze_21286 Corylus avellana HOM05D003906 ORTHO05D004776 1.5e-54 217.6 441 34.5
EL10Ac1g00112 Beta vulgaris HOM05D003906 ORTHO05D004776 2.0e-54 217.2 410 36.6
Psat7g226120 Pisum sativum HOM05D003906 ORTHO05D004776 2.0e-54 217.2 321 40.2
CARHR260350 Cardamine hirsuta HOM05D003906 ORTHO05D004776 2.5e-54 216.9 301 43.2
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 5.7e-54 215.7 409 38.1
SGA_v2.0_scaffold24G10576 Striga asiatica HOM05D003906 ORTHO05D004776 9.7e-54 214.9 446 33.6
ATR1136G046 Amborella trichopoda HOM05D003906 ORTHO05D004776 1.3e-53 214.5 406 36.5
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 4.1e-52 209.5 406 35.7
CDE02G3748 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 5.3e-52 209.1 399 36.3
Mapoly0002s0237 Marchantia polymorpha HOM05D003906 ORTHO05D004776 5.3e-52 209.1 404 36.4
GSVIVG01001786001 Vitis vinifera HOM05D003906 ORTHO05D004776 1.5e-51 207.6 365 36.7
AUR62023516 Chenopodium quinoa HOM05D003906 ORTHO05D004776 3.8e-50 203.0 407 34.9
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 8.5e-50 201.8 446 33.2
COL.COLO4_24795 Corchorus olitorius HOM05D003906 ORTHO05D004776 7.9e-48 195.3 440 34.8
vmacro12471 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 1.0e-47 194.9 323 39.3
AUR62004621 Chenopodium quinoa HOM05D003906 ORTHO05D004776 2.0e-46 190.7 407 33.7
Potri.019G080800 Populus trichocarpa HOM05D003906 ORTHO05D004776 1.3e-45 188.0 326 36.8
A03p28510 Brassica napus HOM05D003906 ORTHO05D004776 6.3e-45 185.7 233 47.6
CSS0005180 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 1.4e-44 184.5 283 38.9
Sabra13G0093600 Salix brachista HOM05D003906 ORTHO05D004776 1.8e-44 184.1 480 31.2
BcaB01g02795 Brassica carinata HOM05D003906 ORTHO05D004776 5.3e-44 182.6 233 45.9
SMO236G0134 Selaginella moellendorffii HOM05D003906 ORTHO05D004776 5.3e-44 182.6 406 32.3
Pp3c25_15350 Physcomitrium patens HOM05D003906 ORTHO05D004776 3.8e-42 176.4 423 31.4
BolC3t15755H Brassica oleracea HOM05D003906 ORTHO05D004776 3.2e-41 173.3 216 48.1
Pp3c16_23970 Physcomitrium patens HOM05D003906 ORTHO05D004776 7.2e-41 172.2 420 32.4
SHI26286 Sapria himalayana HOM05D003906 ORTHO05D004776 4.4e-38 162.9 424 30.7
C03p34460 Brassica napus HOM05D003906 ORTHO05D004776 9.7e-38 161.8 232 45.3
RcHm_v2.0_Chr7g0228461 Rosa chinensis HOM05D003906 ORTHO05D004776 1.3e-37 161.4 186 46.8
Sc23g0001390 Simmondsia chinensis HOM05D003906 ORTHO05D004776 9.1e-36 155.2 310 34.2
FAN13G2487 Fragaria x ananassa HOM05D003906 ORTHO05D004776 2.5e-33 147.1 163 47.9
Nn5g27566 Nelumbo nucifera HOM05D003906 ORTHO05D004776 7.2e-33 145.6 193 43.5
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 4.0e-31 139.8 265 35.5
Migut.C00143 Erythranthe guttata HOM05D003906 ORTHO05D004776 3.8e-26 123.2 379 27.4
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 7.2e-25 119.0 209 38.3
RcHm_v2.0_Chr7g0228471 Rosa chinensis HOM05D003906 ORTHO05D004776 1.4e-23 114.8 222 36.9
unitig_32.g11182 Utricularia gibba HOM05D000008 ORTHO05D000005 2.8e-21 107.1 301 30.2
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 3.7e-21 106.7 306 29.4
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.1e-20 105.1 330 27.9
ClCG08G000300 Citrullus lanatus HOM05D003906 ORTHO05D004776 2.4e-20 104.0 216 34.7
Sed0013629 Sechium edule HOM05D003906 ORTHO05D004776 9.1e-20 102.1 220 33.2
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 2.7e-19 100.5 261 27.6
Nn3g18941 Nelumbo nucifera HOM05D003906 ORTHO05D004776 2.7e-19 100.5 212 33.0
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-19 100.1 272 27.6
Cfa023121 Carpinus fangiana HOM05D003906 ORTHO05D004776 5.0e-18 96.3 279 26.9
AagrBONN_evm.TU.Sc2ySwM_228.4865 Anthoceros agrestis HOM05D003906 ORTHO05D011031 1.2e-16 91.7 175 32.6
AagrBONN_evm.TU.Sc2ySwM_362.2414 Anthoceros agrestis HOM05D007564 ORTHO05D009975 1.0e-15 88.6 178 33.1
BcaC01g04724 Brassica carinata HOM05D003906 ORTHO05D004776 1.2e-14 85.1 204 35.3
AagrBONN_evm.TU.Sc2ySwM_369.175 Anthoceros agrestis HOM05D003906 ORTHO05D004776 2.2e-13 80.9 159 30.8
SEGI_33732 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 6.3e-13 79.3 102 40.2
SEGI_28086 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 2.7e-11 73.9 92 43.5
Cfa012929 Carpinus fangiana HOM05D003906 ORTHO05D004776 7.8e-11 72.4 171 34.5
SEGI_19081 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 2.3e-10 70.9 130 36.2
Cpa.g.c39095 Carica papaya HOM05D003906 ORTHO05D004776 2.5e-09 67.4 86 44.2
vmacro12470 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 2.5e-09 67.4 83 47.0
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 7.3e-09 65.9 182 25.8
CAN.G354.54 Capsicum annuum HOM05D003906 ORTHO05D004776 8.9e-07 58.9 76 42.1
Cpa.g.c30412.1 Carica papaya HOM05D003906 ORTHO05D004776 1.5e-06 58.2 98 39.8


User provided reference genes

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