Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 4.2e-151 538.5 388 100.0
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 7.0e-138 494.6 388 93.8
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 1.7e-131 473.4 388 91.2
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 5.4e-122 441.8 391 89.3
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 8.9e-117 424.5 389 85.1
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 3.3e-111 406.0 370 85.4
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 6.8e-109 398.3 389 81.2
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 7.6e-108 394.8 389 80.7
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 1.7e-107 393.7 389 80.7
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 1.7e-107 393.7 389 80.7
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 3.6e-102 375.9 373 80.2
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 7.8e-97 358.2 391 76.7
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 6.6e-96 355.1 395 75.2
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 2.8e-94 349.7 396 75.3
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 9.0e-93 344.7 393 73.3
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 2.2e-91 340.1 375 74.9
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 4.9e-91 339.0 407 62.2
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 1.9e-90 337.0 407 62.9
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 1.5e-84 317.4 382 72.3
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 1.4e-82 310.8 395 73.4
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 6.7e-80 302.0 382 55.8
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 8.7e-80 301.6 379 56.2
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 8.7e-80 301.6 380 70.8
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 3.3e-79 299.7 387 67.4
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 3.3e-79 299.7 380 70.5
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 4.3e-79 299.3 379 69.9
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 9.6e-79 298.1 380 70.3
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 9.6e-79 298.1 378 69.8
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 1.8e-77 293.9 382 67.3
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.1e-77 293.1 380 68.2
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 3.1e-77 293.1 388 66.5
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 5.3e-77 292.4 380 68.9
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 2.0e-76 290.4 385 68.6
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 3.4e-76 289.7 381 67.2
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.7e-75 287.3 375 68.3
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 1.7e-75 287.3 384 70.1
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 2.2e-75 287.0 381 66.1
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 4.9e-75 285.8 381 69.0
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 6.5e-75 285.4 383 69.7
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 8.4e-75 285.0 393 67.2
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 3.2e-74 283.1 383 66.3
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 3.2e-74 283.1 383 66.3
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.2e-74 283.1 380 67.6
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 4.2e-74 282.7 382 59.2
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.2e-73 281.2 375 66.1
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 1.6e-73 280.8 389 66.3
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 1.6e-73 280.8 384 65.6
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.1e-73 280.4 384 65.4
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 2.1e-73 280.4 393 66.7
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 2.7e-73 280.0 380 67.1
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 3.5e-73 279.6 390 64.6
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 4.6e-73 279.3 393 65.1
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 6.1e-73 278.9 381 66.7
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.3e-72 277.7 365 67.4
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.3e-72 277.7 375 68.0
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 2.3e-72 276.9 381 68.5
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 5.1e-72 275.8 382 68.1
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 6.7e-72 275.4 407 62.4
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 6.7e-72 275.4 391 67.5
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 1.1e-71 274.6 381 68.5
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 1.5e-71 274.2 381 65.6
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 7.4e-71 271.9 374 66.6
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 9.7e-71 271.6 383 66.1
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.3e-70 271.2 386 68.7
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 3.7e-70 269.6 409 51.8
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 4.8e-70 269.2 382 66.0
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 8.2e-70 268.5 380 65.3
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 8.2e-70 268.5 331 68.9
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 1.1e-69 268.1 380 64.5
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 1.8e-69 267.3 384 62.2
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.1e-69 266.5 383 62.4
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 5.3e-69 265.8 365 67.9
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 5.3e-69 265.8 375 59.2
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 6.9e-69 265.4 386 69.9
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 1.2e-68 264.6 381 65.1
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 5.9e-68 262.3 382 66.2
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 6.5e-67 258.8 387 53.0
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 8.5e-67 258.5 380 61.3
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 3.2e-66 256.5 377 65.3
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 2.1e-65 253.8 379 61.2
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 7.9e-65 251.9 373 62.5
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 3.0e-64 250.0 348 63.8
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 3.0e-64 250.0 392 62.2
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 3.9e-64 249.6 367 63.5
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 8.8e-64 248.4 390 61.8
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 8.2e-62 241.9 381 59.8
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 1.8e-61 240.7 355 63.4
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 1.5e-60 237.7 362 67.7
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 2.0e-60 237.3 362 67.4
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 2.6e-60 236.9 368 67.9
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 3.4e-60 236.5 394 60.7
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 1.0e-59 235.0 367 61.9
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 1.3e-59 234.6 346 65.6
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 1.9e-58 230.7 507 35.3
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 7.2e-58 228.8 386 58.8
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 7.2e-58 228.8 398 60.3
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.4e-56 224.6 386 58.3
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 7.4e-55 218.8 342 55.8
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 7.4e-55 218.8 350 61.7
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 1.8e-53 214.2 383 37.6
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 9.1e-53 211.8 261 73.6
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 5.9e-52 209.1 401 55.4
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.1e-50 204.9 376 58.8
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 1.0e-48 198.4 272 65.4
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 5.3e-45 186.0 317 65.9
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 1.2e-41 174.9 314 58.9
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 1.6e-41 174.5 318 61.0
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.3e-40 170.6 341 59.8
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 6.8e-40 169.1 379 52.2
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 8.8e-40 168.7 245 69.0
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 4.4e-39 166.4 373 52.8
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 2.2e-38 164.1 182 56.6
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 2.8e-38 163.7 396 51.3
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 2.8e-38 163.7 341 62.8
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 9.1e-37 158.7 378 50.0
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 1.2e-36 158.3 317 55.8
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 1.0e-35 155.2 310 57.4
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 1.7e-35 154.5 185 50.8
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 5.0e-35 152.9 179 49.7
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 6.5e-35 152.5 131 76.3
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 7.2e-34 149.1 309 57.6
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 4.7e-33 146.4 130 68.5
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.8e-32 144.4 127 69.3
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 2.2e-30 137.5 188 48.9
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 1.2e-25 121.7 242 63.2
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 4.7e-25 119.8 335 51.9
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.0e-23 114.4 127 59.8
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 1.1e-21 108.6 254 57.9
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 5.4e-21 106.3 101 58.4
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 7.0e-21 105.9 115 59.1
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 2.3e-19 100.9 339 48.7
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 5.2e-16 89.7 224 53.6
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 1.2e-12 78.6 150 36.0
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.5e-10 70.9 64 71.9
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 5.6e-10 69.7 56 80.4
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 2.8e-09 67.4 56 78.6
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 5.8e-07 59.7 90 55.6


User provided reference genes

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