Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G05210 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 3.3e-140 501.9 294 100.0
AL6G48810 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 1.4e-122 443.4 294 82.7
BcaC04g21385 Brassica carinata HOM05D006314 ORTHO05D007970 5.0e-112 408.3 298 84.2
C09p32430 Brassica napus HOM05D006314 ORTHO05D007970 5.0e-112 408.3 298 84.2
BolC9t56088H Brassica oleracea HOM05D006314 ORTHO05D007970 5.0e-112 408.3 298 84.2
A09p25520 Brassica napus HOM05D006314 ORTHO05D007970 2.5e-111 406.0 297 84.5
BraA09t38127Z Brassica rapa HOM05D006314 ORTHO05D007970 7.2e-111 404.4 297 84.2
BcaB01g01893 Brassica carinata HOM05D006314 ORTHO05D007970 8.8e-109 397.5 296 82.4
Aa31LG9G9230 Aethionema arabicum HOM05D006314 ORTHO05D007970 1.8e-98 363.2 303 78.5
AL7G32880 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 4.7e-94 348.6 293 75.8
Carub.0007s2019 Capsella rubella HOM05D006314 ORTHO05D007970 1.0e-93 347.4 293 74.7
AT4G21220 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 1.4e-93 347.1 278 78.4
Sp6g03780 Schrenkiella parvula HOM05D006314 ORTHO05D007970 1.7e-88 330.1 294 74.1
Thhalv10025838m.g Eutrema salsugineum HOM05D006314 ORTHO05D007970 5.2e-85 318.5 302 71.5
Ah.14g088200 Amaranthus hybridus HOM05D006314 ORTHO05D007970 1.9e-79 300.1 228 77.2
CARHR227820 Cardamine hirsuta HOM05D006314 ORTHO05D007970 2.5e-79 299.7 292 70.5
Hund21374 Selenicereus undatus HOM05D006314 ORTHO05D007970 3.6e-78 295.8 225 73.3
THA.LOC104812945 Tarenaya hassleriana HOM05D006314 ORTHO05D007970 4.4e-76 288.9 301 67.8
Solyc03g031560.4 Solanum lycopersicum HOM05D006314 ORTHO05D007970 4.9e-75 285.4 281 66.5
EL10Ac8g19905 Beta vulgaris HOM05D006314 ORTHO05D007970 9.2e-74 281.2 287 62.4
CiPaw.09G085200 Carya illinoinensis HOM05D006314 ORTHO05D007970 1.2e-73 280.8 246 63.0
CiPaw.09G086300 Carya illinoinensis HOM05D006314 ORTHO05D007970 2.7e-73 279.6 294 55.4
Manes.14G141100 Manihot esculenta HOM05D006314 ORTHO05D007970 3.5e-73 279.3 230 72.2
Prupe.4G027100 Prunus persica HOM05D006314 ORTHO05D007970 6.6e-72 275.0 230 64.8
Aqoxy5G01372 Aquilegia oxysepala HOM05D006314 ORTHO05D007970 1.1e-71 274.2 298 57.0
GSVIVG01012621001 Vitis vinifera HOM05D006314 ORTHO05D007970 1.5e-71 273.9 263 56.7
Gorai.010G176200 Gossypium raimondii HOM05D006314 ORTHO05D007970 1.9e-71 273.5 267 57.3
Cfa021643 Carpinus fangiana HOM05D006314 ORTHO05D007970 5.6e-71 271.9 248 64.5
Sabra04G0024200 Salix brachista HOM05D006314 ORTHO05D007970 5.6e-71 271.9 272 57.7
Gohir.A06G145000 Gossypium hirsutum HOM05D006314 ORTHO05D007970 1.2e-70 270.8 270 53.0
Nn1g03656 Nelumbo nucifera HOM05D006314 ORTHO05D007970 3.6e-70 269.2 270 63.3
PGR031G0385 Punica granatum HOM05D006314 ORTHO05D007970 1.1e-69 267.7 279 65.6
SEGI_37493 Sequoiadendron giganteum HOM05D006314 ORTHO05D007970 1.1e-69 267.7 220 63.2
QL05p075316 Quercus lobata HOM05D006314 ORTHO05D007970 2.4e-69 266.5 262 58.4
CANSAT56G1066 Cannabis sativa HOM05D006314 ORTHO05D007970 3.1e-69 266.2 242 69.8
Potri.004G039400 Populus trichocarpa HOM05D006314 ORTHO05D007970 1.5e-68 263.8 230 63.0
ECA236G4636 Erigeron canadensis HOM05D006314 ORTHO05D007970 3.4e-68 262.7 242 60.7
CDE05G2602 Ceratophyllum demersum HOM05D006314 ORTHO05D007970 7.6e-68 261.5 235 71.1
Ciclev10018286m.g Citrus clementina HOM05D006314 ORTHO05D007970 1.1e-66 257.7 231 66.7
COL.COLO4_31719 Corchorus olitorius HOM05D006314 ORTHO05D007970 1.1e-66 257.7 296 52.7
SalBow8G4748 Salvia bowleyana HOM05D006314 ORTHO05D007970 1.9e-66 256.9 229 61.6
ATR0618G448 Amborella trichopoda HOM05D006314 ORTHO05D007970 7.1e-66 255.0 230 65.7
HPP92_009395 Vanilla planifolia HOM05D006314 ORTHO05D007970 1.2e-65 254.2 232 67.7
FAN21G1433 Fragaria x ananassa HOM05D006314 ORTHO05D007970 2.7e-65 253.1 245 62.0
Haze_06729 Corylus avellana HOM05D006314 ORTHO05D007970 1.0e-64 251.1 173 68.2
HPP92_009390 Vanilla planifolia HOM05D006314 ORTHO05D007970 1.3e-64 250.8 258 60.5
Lsat_1_v5_gn_7_17861 Lactuca sativa HOM05D006314 ORTHO05D007970 3.0e-64 249.6 229 60.7
Duzib235G0913 Durio zibethinus HOM05D006314 ORTHO05D007970 3.9e-64 249.2 311 45.7
SGA_v2.0_scaffold7G03887 Striga asiatica HOM05D006314 ORTHO05D007970 3.9e-64 249.2 221 59.7
CAN.G404.73 Capsicum annuum HOM05D006314 ORTHO05D007970 6.6e-64 248.4 235 60.4
Cpa.g.sc81.24 Carica papaya HOM05D006314 ORTHO05D007970 8.7e-64 248.1 232 66.4
Haze_06726 Corylus avellana HOM05D006314 ORTHO05D007970 1.1e-63 247.7 171 67.8
Actinidia05538 Actinidia chinensis HOM05D006314 ORTHO05D007970 3.3e-63 246.1 223 70.0
Actinidia26953 Actinidia chinensis HOM05D006314 ORTHO05D007970 3.3e-63 246.1 161 71.4
Eucgr.D00832 Eucalyptus grandis HOM05D006314 ORTHO05D007970 4.3e-63 245.7 264 62.9
CsaV3_6G049280 Cucumis sativus L. HOM05D006314 ORTHO05D007970 5.6e-63 245.4 232 59.5
HanXRQChr05g0130041 Helianthus annuus HOM05D006314 ORTHO05D007970 5.6e-63 245.4 272 52.9
MD05G1340500 Malus domestica HOM05D006314 ORTHO05D007970 1.6e-62 243.8 292 52.1
DCAR_004187 Daucus carota HOM05D006314 ORTHO05D007970 8.1e-62 241.5 285 56.8
Migut.M01276 Erythranthe guttata HOM05D006314 ORTHO05D007970 1.1e-61 241.1 261 52.9
VMungo1215G0781 Vigna mungo HOM05D006314 ORTHO05D007970 2.4e-61 240.0 233 61.4
Glyma.01G240700 Glycine max HOM05D006314 ORTHO05D007970 1.7e-59 233.8 230 62.2
Phvul.002G049200 Phaseolus vulgaris HOM05D006314 ORTHO05D007970 4.9e-59 232.3 288 54.2
RcHm_v2.0_Chr5g0004131 Rosa chinensis HOM05D006314 ORTHO05D007970 4.9e-59 232.3 249 58.6
ClCG01G022220 Citrullus lanatus HOM05D006314 ORTHO05D007970 8.4e-59 231.5 257 60.3
FAN25G2977 Fragaria x ananassa HOM05D006314 ORTHO05D007970 8.4e-59 231.5 288 54.5
Medtr7g047630 Medicago truncatula HOM05D006314 ORTHO05D007970 8.4e-59 231.5 239 58.2
Medtr7g451810 Medicago truncatula HOM05D006314 ORTHO05D007970 8.4e-59 231.5 239 58.2
Sopen03g005440 Solanum pennellii HOM05D006314 ORTHO05D007970 1.1e-58 231.1 270 61.1
FvH4_3g02730 Fragaria vesca HOM05D006314 ORTHO05D007970 1.6e-57 227.3 237 61.2
TPR.G10185 Trifolium pratense HOM05D006314 ORTHO05D007970 2.1e-57 226.9 276 52.5
MBI02_g34312_MAGBIO Magnolia biondii HOM05D006314 ORTHO05D007970 6.0e-57 225.3 296 49.3
Lj1g0010466 Lotus japonicus HOM05D006314 ORTHO05D007970 3.9e-56 222.6 287 51.6
MELO3C007369.2 Cucumis melo HOM05D006314 ORTHO05D007970 6.7e-56 221.9 257 56.0
vmacro03713 Vaccinium macrocarpon HOM05D006314 ORTHO05D007970 1.1e-55 221.1 197 68.5
Mapoly0013s0096 Marchantia polymorpha HOM05D006314 ORTHO05D007970 2.5e-55 219.9 227 55.5
Ca_07429_v3 Cicer arietinum L. HOM05D006314 ORTHO05D007970 3.6e-54 216.1 230 58.3
TWI38G0264 Tripterygium wilfordii HOM05D006314 ORTHO05D007970 4.8e-54 215.7 243 56.8
Cc00_g17320 Coffea canephora HOM05D006314 ORTHO05D007970 3.1e-53 213.0 225 61.8
Oeu002711.1 Olea europaea HOM05D006314 ORTHO05D007970 4.0e-53 212.6 221 55.7
Lalb_Chr16g0376341 Lupinus albus HOM05D006314 ORTHO05D007970 1.5e-52 210.7 232 61.6
Gohir.D06G151200 Gossypium hirsutum HOM05D006314 ORTHO05D007970 2.2e-51 206.8 191 54.5
AUR62012635 Chenopodium quinoa HOM05D006314 ORTHO05D007970 2.9e-51 206.5 262 55.7
CBR_g20160 Chara braunii HOM05D006314 ORTHO05D007970 3.8e-51 206.1 235 58.3
PSO541G6217 Papaver somniferum HOM05D006314 ORTHO05D007970 3.8e-51 206.1 252 44.0
Lj1A1224T36 Lonicera japonica HOM05D006314 ORTHO05D007970 3.2e-50 203.0 212 60.4
Nitab4.5_0004428g0040 Nicotiana tabacum HOM05D006314 ORTHO05D007970 4.2e-50 202.6 255 44.3
PSO675G3227 Papaver somniferum HOM05D006314 ORTHO05D007970 7.1e-50 201.8 282 40.8
Psat3g152680 Pisum sativum HOM05D006314 ORTHO05D007970 1.6e-49 200.7 251 58.6
Rhsim13G0158200 Rhododendron simsii HOM05D006314 ORTHO05D007970 1.3e-48 197.6 255 52.2
PGSC0003DMG400005049 Solanum tuberosum HOM05D006314 ORTHO05D007970 5.1e-48 195.7 210 66.7
Thecc.06G213300 Theobroma cacao HOM05D006314 ORTHO05D007970 1.1e-47 194.5 189 64.0
arahy.Tifrunner.gnm1.ann1.937J55 Arachis hypogaea HOM05D006314 ORTHO05D007970 2.5e-47 193.4 215 62.8
arahy.Tifrunner.gnm1.ann1.PEH28W Arachis hypogaea HOM05D006314 ORTHO05D007970 2.5e-47 193.4 215 62.8
Sc05g0008810 Simmondsia chinensis HOM05D006314 ORTHO05D007970 5.6e-47 192.2 240 55.0
Zm00001eb306890 Zea mays HOM05D006314 ORTHO05D007970 1.6e-46 190.7 257 54.9
AagrBONN_evm.TU.Sc2ySwM_228.2540 Anthoceros agrestis HOM05D006314 ORTHO05D007970 4.8e-46 189.1 223 55.6
AUR62022021 Chenopodium quinoa HOM05D006314 ORTHO05D007970 4.8e-46 189.1 231 56.7
Glyma.11G002900 Glycine max HOM05D006314 ORTHO05D007970 3.4e-44 183.0 161 60.9
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 1.7e-43 180.6 163 57.7
Dinv17838 Davidia involucrata HOM05D006314 ORTHO05D007970 1.8e-40 170.6 224 56.7
Pp3c4_25780 Physcomitrium patens HOM05D006314 ORTHO05D007970 3.0e-40 169.9 222 55.9
Nn5g27983 Nelumbo nucifera HOM05D006314 ORTHO05D007970 8.2e-38 161.8 114 67.5
Hma1.2p1_0729F.1_g209630 Hydrangea macrophylla HOM05D006314 ORTHO05D007970 1.1e-37 161.4 188 46.3
Nitab4.5_0000900g0100 Nicotiana tabacum HOM05D006314 ORTHO05D007970 3.4e-36 156.4 263 36.1
PRCOL_00005452 Prasinoderma coloniale HOM05D006314 ORTHO05D007970 5.0e-35 152.5 172 42.4
CSS0045332 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 6.1e-33 145.6 118 58.5
TAR627G0699 Trochodendron aralioides HOM05D006314 ORTHO05D007970 6.1e-33 145.6 107 61.7
SMO004G0010 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 3.1e-29 133.3 129 51.2
Sed0025568 Sechium edule HOM05D006314 ORTHO05D007970 1.0e-27 128.3 275 41.5
Peaxi162Scf00781g00047 Petunia axillaris HOM05D006314 ORTHO05D007970 1.9e-26 124.0 158 43.7
CSS0018641 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 2.7e-17 93.6 105 70.5
SMO361G0013 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 4.7e-17 92.8 109 46.8
MSTRG.16127 Avicennia marina HOM05D006314 ORTHO05D007970 1.1e-15 88.2 102 44.1
Os07g0134400 Oryza sativa ssp. japonica HOM05D006314 ORTHO05D007970 2.0e-12 77.4 112 65.2
FAN25G3594 Fragaria x ananassa HOM05D006314 ORTHO05D007970 1.7e-11 74.3 43 76.7
A01p12600 Brassica napus HOM05D000022 ORTHO05D020144 5.5e-10 69.3 60 61.7
Medtr7g047660 Medicago truncatula HOM05D052963 ORTHO05D007970 1.0e-08 65.1 51 62.7
Sp7g19320 Schrenkiella parvula HOM05D006314 ORTHO05D007970 1.8e-08 64.3 152 33.6
C01p15170 Brassica napus HOM05D000022 ORTHO05D020144 2.3e-08 63.9 68 52.9
BraA01t01203Z Brassica rapa HOM05D006314 ORTHO05D020144 8.8e-08 62.0 50 68.0
BolC1t01466H Brassica oleracea HOM05D000022 ORTHO05D020144 3.3e-07 60.1 53 62.3
MD10G1314000 Malus domestica HOM05D006314 ORTHO05D007970 3.3e-07 60.1 42 61.9


User provided reference genes

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