Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G03156 Arabidopsis thaliana HOM05D000064 ORTHO05D081449 2.9e-35 151.4 78 100.0
AT4G08190 Arabidopsis thaliana HOM05D000064 ORTHO05D081314 2.9e-19 98.2 131 48.9
AL5G39400 Arabidopsis lyrata HOM05D000031 ORTHO05D001033 6.6e-11 70.5 38 89.5
AT3G57750 Arabidopsis thaliana HOM05D000031 ORTHO05D001033 6.6e-11 70.5 38 89.5
AL48U10060 Arabidopsis lyrata HOM05D000064 ORTHO05D000281 1.2e-07 59.7 37 78.4
AL8G35540 Arabidopsis lyrata HOM05D000064 ORTHO05D000281 1.2e-07 59.7 37 78.4
AT5G59150 Arabidopsis thaliana HOM05D000064 ORTHO05D000281 1.2e-07 59.7 37 78.4
Carub.0005s2460 Capsella rubella HOM05D000031 ORTHO05D001033 1.2e-07 59.7 40 75.0
Carub.0008s1980 Capsella rubella HOM05D000064 ORTHO05D000281 1.2e-07 59.7 37 78.4
Sp6g20840 Schrenkiella parvula HOM05D000064 ORTHO05D000281 1.2e-07 59.7 37 78.4
CARHR285390 Cardamine hirsuta HOM05D000064 ORTHO05D000281 2.0e-07 58.9 37 78.4
Thhalv10014634m.g Eutrema salsugineum HOM05D000064 ORTHO05D000281 4.4e-07 57.8 37 75.7
AL5G25840 Arabidopsis lyrata HOM05D000064 ORTHO05D000281 7.5e-07 57.0 37 75.7
AT3G46830 Arabidopsis thaliana HOM05D000064 ORTHO05D000281 7.5e-07 57.0 37 75.7
Carub.0005s1306 Capsella rubella HOM05D000064 ORTHO05D000281 7.5e-07 57.0 37 75.7
CARHR155410 Cardamine hirsuta HOM05D000064 ORTHO05D000281 7.5e-07 57.0 37 75.7
CARHR168070 Cardamine hirsuta HOM05D000031 ORTHO05D001033 7.5e-07 57.0 38 76.3
Thhalv10002662m.g Eutrema salsugineum HOM05D000064 ORTHO05D000281 7.5e-07 57.0 37 75.7
Gohir.A03G046100 Gossypium hirsutum HOM05D000064 ORTHO05D000281 7.5e-07 57.0 35 77.1
Sp5g14900 Schrenkiella parvula HOM05D000064 ORTHO05D000281 7.5e-07 57.0 37 75.7
THA.LOC104810747 Tarenaya hassleriana HOM05D000064 ORTHO05D000281 7.5e-07 57.0 37 75.7
THA.LOC104814890 Tarenaya hassleriana HOM05D000064 ORTHO05D000281 7.5e-07 57.0 37 75.7
BcaB01g00979 Brassica carinata HOM05D000064 ORTHO05D000281 9.8e-07 56.6 37 75.7
Manes.02G126900 Manihot esculenta HOM05D000064 ORTHO05D000281 9.8e-07 56.6 37 75.7
Aa31LG1G12020 Aethionema arabicum HOM05D000064 ORTHO05D000281 1.7e-06 55.8 37 73.0
Cfa011583 Carpinus fangiana HOM05D000064 ORTHO05D000281 2.2e-06 55.5 37 70.3
Haze_24200 Corylus avellana HOM05D000064 ORTHO05D000281 2.2e-06 55.5 37 70.3
A07p23660 Brassica napus HOM05D000031 ORTHO05D001033 2.9e-06 55.1 37 64.9
BraA07t30019Z Brassica rapa HOM05D000031 ORTHO05D001033 2.9e-06 55.1 37 64.9
Thhalv10006089m.g Eutrema salsugineum HOM05D000031 ORTHO05D001033 2.9e-06 55.1 38 76.3
Gohir.A05G092300 Gossypium hirsutum HOM05D000064 ORTHO05D000281 2.9e-06 55.1 37 70.3
Gohir.D03G121100 Gossypium hirsutum HOM05D000064 ORTHO05D000281 2.9e-06 55.1 35 74.3
Gohir.D05G093100 Gossypium hirsutum HOM05D000064 ORTHO05D000281 2.9e-06 55.1 37 70.3
Gorai.009G095700 Gossypium raimondii HOM05D000064 ORTHO05D000281 2.9e-06 55.1 37 70.3
Prupe.6G068000 Prunus persica HOM05D000064 ORTHO05D000281 2.9e-06 55.1 37 70.3
Zm00001eb062910 Zea mays HOM05D000064 ORTHO05D000281 2.9e-06 55.1 37 73.0
BcaB01g04607 Brassica carinata HOM05D000064 ORTHO05D000281 3.7e-06 54.7 37 73.0
BcaB01g04617 Brassica carinata HOM05D000064 ORTHO05D018678 3.7e-06 54.7 37 73.0
BcaC01g01881 Brassica carinata HOM05D000064 ORTHO05D000281 3.7e-06 54.7 37 73.0
A06p20710 Brassica napus HOM05D000064 ORTHO05D000281 3.7e-06 54.7 37 73.0
C03p70980 Brassica napus HOM05D000064 ORTHO05D000281 3.7e-06 54.7 37 73.0
BolC3t19377H Brassica oleracea HOM05D000064 ORTHO05D000281 3.7e-06 54.7 37 73.0
BraA06t25149Z Brassica rapa HOM05D000064 ORTHO05D000281 3.7e-06 54.7 37 73.0
Manes.01G167900 Manihot esculenta HOM05D000064 ORTHO05D000281 3.7e-06 54.7 37 73.0
THA.LOC104799423 Tarenaya hassleriana HOM05D000064 ORTHO05D000281 3.7e-06 54.7 37 73.0
BcaC04g19813 Brassica carinata HOM05D000064 ORTHO05D000281 4.9e-06 54.3 37 70.3
BcaC04g19814 Brassica carinata HOM05D000064 ORTHO05D000281 4.9e-06 54.3 37 70.3
A10p16350 Brassica napus HOM05D000064 ORTHO05D000281 4.9e-06 54.3 37 70.3
C09p51410 Brassica napus HOM05D000064 ORTHO05D000281 4.9e-06 54.3 37 70.3
BolC9t58001H Brassica oleracea HOM05D000064 ORTHO05D000281 4.9e-06 54.3 37 70.3
BraA10t43720Z Brassica rapa HOM05D000064 ORTHO05D000281 4.9e-06 54.3 37 70.3
CANSAT54G0759 Cannabis sativa HOM05D000064 ORTHO05D000281 4.9e-06 54.3 37 70.3
Carub.0001s0672 Capsella rubella HOM05D000064 ORTHO05D000281 4.9e-06 54.3 37 67.6
Ca_20612_v3 Cicer arietinum L. HOM05D000064 ORTHO05D000281 4.9e-06 54.3 37 67.6
Ca_29566_v3 Cicer arietinum L. HOM05D000064 ORTHO05D000281 4.9e-06 54.3 37 67.6
Medtr4g064897 Medicago truncatula HOM05D000064 ORTHO05D000281 4.9e-06 54.3 37 67.6
QL01p028114 Quercus lobata HOM05D000064 ORTHO05D000281 4.9e-06 54.3 37 67.6
RcHm_v2.0_Chr5g0042031 Rosa chinensis HOM05D000064 ORTHO05D018678 4.9e-06 54.3 37 67.6
RcHm_v2.0_Chr5g0066871 Rosa chinensis HOM05D000064 ORTHO05D000281 4.9e-06 54.3 37 67.6
TPR.G23602 Trifolium pratense HOM05D000064 ORTHO05D000281 4.9e-06 54.3 37 67.6
Aa31LG1G6690 Aethionema arabicum HOM05D000064 ORTHO05D000281 6.4e-06 53.9 37 67.6
AL1G17560 Arabidopsis lyrata HOM05D000064 ORTHO05D000281 6.4e-06 53.9 37 67.6
AT1G07410 Arabidopsis thaliana HOM05D000064 ORTHO05D000281 6.4e-06 53.9 37 67.6
C06p24810 Brassica napus HOM05D000031 ORTHO05D001033 6.4e-06 53.9 37 62.2
BolC6t37634H Brassica oleracea HOM05D000031 ORTHO05D001033 6.4e-06 53.9 37 62.2
CARHR007150 Cardamine hirsuta HOM05D000064 ORTHO05D000281 6.4e-06 53.9 37 67.6
COL.COLO4_18597 Corchorus olitorius HOM05D000064 ORTHO05D000281 6.4e-06 53.9 37 70.3
Duzib150G1430 Durio zibethinus HOM05D000064 ORTHO05D000281 6.4e-06 53.9 37 70.3
Thhalv10008748m.g Eutrema salsugineum HOM05D000064 ORTHO05D000281 6.4e-06 53.9 37 67.6
Glyma.11G135400 Glycine max HOM05D000064 ORTHO05D000281 6.4e-06 53.9 35 71.4
Glyma.12G058900 Glycine max HOM05D000064 ORTHO05D000281 6.4e-06 53.9 35 71.4
Gohir.D08G012300 Gossypium hirsutum HOM05D000064 ORTHO05D000281 6.4e-06 53.9 37 67.6
Gorai.004G006300 Gossypium raimondii HOM05D000064 ORTHO05D000281 6.4e-06 53.9 37 67.6
Hma1.2p1_0274F.1_g110445 Hydrangea macrophylla HOM05D000064 ORTHO05D000281 6.4e-06 53.9 37 64.9
MD03G1084700 Malus domestica HOM05D000064 ORTHO05D000281 6.4e-06 53.9 37 67.6
MD11G1092300 Malus domestica HOM05D000064 ORTHO05D018678 6.4e-06 53.9 48 60.4
Sp1g06150 Schrenkiella parvula HOM05D000064 ORTHO05D000281 6.4e-06 53.9 37 67.6
Hund04910 Selenicereus undatus HOM05D000064 ORTHO05D000281 6.4e-06 53.9 35 74.3
TWI31G0378 Tripterygium wilfordii HOM05D000064 ORTHO05D000281 6.4e-06 53.9 35 74.3
TAR633G2610 Trochodendron aralioides HOM05D000064 ORTHO05D000281 6.4e-06 53.9 37 67.6
BolC3t13843H Brassica oleracea HOM05D000064 ORTHO05D018678 8.3e-06 53.5 37 70.3
DCAR_005930 Daucus carota HOM05D000064 ORTHO05D000281 8.3e-06 53.5 35 71.4
Duzib168G0482 Durio zibethinus HOM05D000064 ORTHO05D000281 8.3e-06 53.5 37 67.6
Duzib168G0862 Durio zibethinus HOM05D000064 ORTHO05D000281 8.3e-06 53.5 37 67.6
FAN11G0068 Fragaria x ananassa HOM05D000064 ORTHO05D000281 8.3e-06 53.5 37 67.6
Lalb_Chr01g0003441 Lupinus albus HOM05D000064 ORTHO05D000281 8.3e-06 53.5 35 71.4


User provided reference genes

Program Settings