Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 2380.5 1198 100.0
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 2301.9 1198 96.3
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 2213.0 1199 92.2
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 2210.6 1199 92.4
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 2186.8 1199 91.0
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 2156.7 1199 90.5
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 2132.8 1200 88.5
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 2132.1 1200 88.5
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 2122.8 1210 87.7
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 2114.0 1224 86.9
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 2074.7 1199 86.2
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 2039.2 1200 86.0
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1925.6 1198 80.0
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1734.9 1207 76.8
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1691.0 1206 74.2
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1689.1 1200 68.1
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1686.0 1203 68.6
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1679.5 1201 68.4
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1675.6 1203 68.6
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1674.4 1200 68.6
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1672.1 1198 67.2
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1665.6 1199 67.7
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1661.7 1198 67.5
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1661.4 1240 66.1
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1661.4 1203 67.5
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1661.0 1199 67.6
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1659.4 1196 67.8
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1659.0 1203 67.5
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1658.7 1199 67.6
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1654.4 1199 67.4
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1652.9 1193 67.2
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1650.6 1196 68.0
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1649.0 1182 68.4
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1647.9 1173 67.9
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1644.0 1199 66.9
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1634.0 1201 67.6
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1631.3 1195 66.2
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1616.7 1198 66.4
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1608.6 1198 65.2
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1601.6 1199 64.9
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1601.3 1194 65.6
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1594.7 1197 66.0
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1593.2 1196 64.5
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1590.1 1196 64.6
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1581.6 1201 64.8
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1578.9 1197 64.7
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1575.8 1196 64.3
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1575.8 1204 64.8
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1575.8 1193 63.6
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1573.5 1225 63.0
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1572.8 1195 65.2
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1568.1 1310 61.2
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1567.0 1195 63.6
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1566.6 1195 63.9
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1566.6 1205 64.5
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1562.7 1211 63.0
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1562.4 1199 63.4
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1562.0 1196 63.5
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1560.8 1193 63.1
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1558.9 1211 63.3
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1556.6 1195 63.0
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1553.9 1194 63.4
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1553.9 1196 63.0
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1552.3 1195 62.8
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1550.4 1180 63.9
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1540.0 1204 63.3
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1536.2 1156 64.5
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1528.5 1197 62.7
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1524.2 1196 62.5
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1519.2 1240 60.5
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1517.7 1209 60.8
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1513.8 1183 61.5
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1506.9 1200 60.7
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1503.8 1209 60.5
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1498.8 1209 60.5
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1491.9 1203 60.8
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1488.0 1196 60.0
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1486.5 1173 61.4
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1484.9 1200 61.5
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1482.2 1197 62.2
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1479.9 1180 61.0
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1479.5 1202 60.2
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1478.0 1203 60.5
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1473.0 1197 62.1
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1471.1 1160 61.9
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1465.7 1274 57.3
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1456.8 1156 60.9
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1449.1 1251 57.8
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1447.6 1180 60.9
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1439.5 1016 68.9
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1419.1 1240 57.7
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1417.9 1192 59.5
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1363.2 1193 56.3
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1352.8 1283 54.7
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1347.0 765 86.9
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1323.9 1193 55.0
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1320.8 1025 63.3
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1308.5 1206 55.7
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1266.9 969 64.7
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1226.1 989 62.2
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1218.8 1171 53.9
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1189.9 1197 52.5
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1157.9 1206 48.6
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1140.6 1210 48.2
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1134.4 1219 50.0
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1120.9 1168 48.6
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1102.8 836 64.8
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 4.0e-301 1038.5 855 62.1
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 2.4e-298 1029.2 592 87.0
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 9.3e-274 947.6 711 66.8
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 9.1e-253 877.9 1072 43.6
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.3e-240 836.6 717 58.2
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 6.8e-240 835.1 1101 42.7
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 5.4e-213 745.7 1175 39.7
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 6.0e-212 742.3 587 69.8
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 2.4e-197 693.7 566 62.7
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 3.0e-195 686.8 486 66.9
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.7e-190 671.0 483 69.2
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 1.9e-186 657.5 753 48.7
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 9.7e-146 522.3 368 74.2
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.0e-139 502.3 387 65.1
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 2.5e-133 481.1 411 59.1
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 1.7e-118 431.8 714 38.2
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 1.2e-95 355.9 259 66.8
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 1.7e-81 308.9 280 58.6
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 3.2e-56 224.9 298 41.3
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 3.5e-55 221.5 175 60.6
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 8.2e-52 210.3 190 55.3
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 1.2e-50 206.5 302 39.7
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 4.2e-48 198.0 140 70.7
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 5.5e-48 197.6 234 46.6
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 4.6e-47 194.5 135 77.0
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 9.7e-29 133.7 145 49.7
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 2.4e-19 102.4 72 63.9
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 3.0e-14 85.5 205 31.2
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 5.2e-14 84.7 322 23.6
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 2.2e-12 79.3 94 45.7
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 5.9e-10 71.2 107 40.2
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 7.7e-10 70.9 62 58.1
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 6.5e-09 67.8 96 43.8
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 8.5e-09 67.4 44 70.5
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 4.2e-08 65.1 59 57.6
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 8.0e-07 60.8 45 62.2
A09p25680 Brassica napus HOM05D005254 ORTHO05D100756 6.8e-06 57.8 24 95.8


User provided reference genes

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