Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 2.3e-172 609.8 584 100.0
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 1.6e-162 577.0 587 96.6
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 4.3e-155 552.4 596 93.0
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 2.1e-154 550.1 588 94.2
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 2.9e-151 539.7 585 94.2
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 2.5e-131 473.4 593 87.5
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 5.6e-131 472.2 335 89.9
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 2.4e-129 466.8 590 88.0
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 5.3e-129 465.7 632 81.8
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 1.1e-126 458.0 335 88.7
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 9.0e-121 438.3 607 82.2
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 4.8e-114 416.0 601 81.4
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 1.5e-107 394.4 589 81.5
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 1.7e-103 380.9 335 75.5
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 8.4e-103 378.6 335 75.5
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 3.2e-102 376.7 335 76.1
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 1.3e-100 371.3 336 74.4
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 1.8e-100 370.9 335 74.3
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 3.0e-100 370.2 335 73.7
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 3.7e-98 363.2 335 72.8
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 6.3e-98 362.5 335 72.5
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 8.2e-98 362.1 337 73.3
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 8.2e-98 362.1 337 73.3
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 2.4e-97 360.5 336 72.9
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 3.1e-97 360.1 336 71.1
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 4.1e-97 359.8 335 72.8
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 5.3e-97 359.4 333 73.9
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 2.6e-96 357.1 310 78.1
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.0e-95 355.1 303 78.9
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 8.5e-95 352.1 336 72.3
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 3.2e-94 350.1 296 79.4
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 4.2e-94 349.7 338 72.2
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 9.4e-94 348.6 314 75.5
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 3.6e-93 346.7 332 72.3
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 6.1e-93 345.9 332 72.3
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 7.9e-93 345.5 332 72.3
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 1.0e-92 345.1 304 78.0
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 2.3e-92 344.0 299 71.6
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 3.0e-92 343.6 332 72.0
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 1.5e-91 341.3 337 70.0
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 2.0e-91 340.9 296 77.4
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 3.3e-91 340.1 337 69.7
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 3.3e-91 340.1 321 72.6
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 3.3e-91 340.1 308 75.3
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 5.7e-91 339.3 304 74.7
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 5.7e-91 339.3 327 70.6
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 5.7e-91 339.3 304 76.3
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 5.7e-91 339.3 320 72.8
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 9.7e-91 338.6 296 78.0
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.3e-90 338.2 308 74.7
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 1.7e-90 337.8 304 73.7
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 2.2e-90 337.4 304 73.0
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 2.2e-90 337.4 335 70.4
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 3.7e-90 336.7 335 68.7
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 4.8e-90 336.3 329 70.5
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.4e-89 334.7 296 77.4
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 1.4e-89 334.7 304 72.4
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 1.8e-89 334.3 306 73.5
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 2.4e-89 334.0 303 75.6
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 2.4e-89 334.0 314 72.0
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 3.1e-89 333.6 304 72.0
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 4.1e-89 333.2 296 77.0
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 9.1e-89 332.0 321 69.8
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 2.6e-88 330.5 335 68.4
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 2.6e-88 330.5 336 68.5
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 3.4e-88 330.1 315 70.8
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 4.5e-88 329.7 307 73.0
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 5.9e-88 329.3 335 54.3
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 1.0e-87 328.6 310 71.3
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 2.9e-87 327.0 315 71.7
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 3.8e-87 326.6 335 67.5
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 3.8e-87 326.6 299 73.9
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 5.0e-87 326.2 304 72.4
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 8.5e-87 325.5 329 69.3
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 1.4e-86 324.7 343 66.8
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.9e-86 324.3 335 68.7
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 2.5e-86 323.9 293 75.8
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 4.2e-86 323.2 335 68.7
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 4.2e-86 323.2 320 71.2
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 1.6e-85 321.2 306 70.6
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.1e-85 320.9 335 68.4
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 2.7e-85 320.5 354 51.7
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 6.1e-85 319.3 304 72.4
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 6.1e-85 319.3 299 73.2
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 6.1e-85 319.3 335 68.1
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 3.9e-84 316.6 308 64.9
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 8.8e-84 315.5 304 72.0
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 2.0e-83 314.3 319 70.2
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 7.4e-83 312.4 342 66.4
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 4.8e-82 309.7 304 54.3
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 1.8e-81 307.8 445 96.9
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 1.2e-80 305.1 306 67.6
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 4.0e-76 290.0 338 66.3
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 3.8e-71 273.5 309 66.0
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 4.2e-70 270.0 293 70.0
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 5.7e-67 259.6 317 49.5
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 2.4e-65 254.2 292 64.4
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 2.9e-63 247.3 284 66.5
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 6.3e-58 229.6 211 81.0
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 2.9e-55 220.7 580 34.0
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 1.8e-52 211.5 174 65.5
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 2.4e-49 201.1 147 66.7
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 4.6e-48 196.8 135 72.6
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 3.0e-47 194.1 171 59.1
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 5.4e-41 173.3 103 82.5
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 6.2e-37 159.8 80 92.5
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 1.5e-35 155.2 263 50.2
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 4.4e-35 153.7 103 71.8
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 3.7e-34 150.6 78 88.5
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 3.7e-34 150.6 124 62.9
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 6.6e-31 139.8 262 51.1
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 8.6e-31 139.4 263 45.2
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 2.8e-29 134.4 367 33.0
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 1.4e-25 122.1 139 71.9
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 2.4e-20 104.8 351 30.2
BcaC08g44952 Brassica carinata HOM05D006642 ORTHO05D032904 2.3e-15 88.2 98 55.1
BolC6t37748H Brassica oleracea HOM05D000461 ORTHO05D001840 1.5e-11 75.5 43 88.4
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 6.0e-08 63.5 113 28.3
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 1.0e-07 62.8 113 28.3
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 1.3e-07 62.4 113 27.4


User provided reference genes

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