Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 1.8e-137 492.7 258 100.0
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 5.9e-125 451.1 258 90.3
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 7.5e-120 434.1 258 89.9
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 1.4e-118 429.9 258 88.0
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 6.6e-116 421.0 257 85.2
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 6.6e-108 394.4 219 90.0
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 3.1e-105 385.6 258 77.9
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 1.7e-100 369.8 235 78.3
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 8.6e-100 367.5 259 76.1
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 9.5e-99 364.0 253 75.9
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 9.5e-99 364.0 253 75.9
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 3.1e-97 359.0 254 75.6
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 3.5e-93 345.5 278 69.1
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 3.9e-92 342.0 198 85.9
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 2.5e-83 312.8 253 65.2
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 6.2e-82 308.1 252 62.7
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 2.6e-80 302.8 263 61.6
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.3e-79 300.4 255 60.4
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 2.2e-79 299.7 269 57.6
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 1.4e-78 297.0 231 65.8
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 9.3e-78 294.3 220 66.4
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 2.1e-77 293.1 238 63.4
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 1.0e-76 290.8 225 68.0
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 1.7e-76 290.0 254 60.2
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 2.3e-76 289.7 258 60.1
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 2.3e-76 289.7 252 59.5
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 3.0e-76 289.3 223 66.4
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 5.1e-76 288.5 264 64.4
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.5e-75 287.0 218 66.5
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 2.5e-75 286.2 257 60.7
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 3.3e-75 285.8 223 65.0
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 7.3e-75 284.6 259 59.5
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.3e-74 283.9 259 58.7
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.3e-74 283.9 217 65.9
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.6e-74 283.5 218 65.6
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 1.6e-74 283.5 266 59.4
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.6e-74 283.5 217 65.9
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 2.1e-74 283.1 220 63.6
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 4.8e-74 282.0 256 59.4
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 4.8e-74 282.0 233 60.5
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 6.2e-74 281.6 217 65.9
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 6.2e-74 281.6 219 65.3
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 1.1e-73 280.8 257 58.4
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 1.4e-73 280.4 250 59.2
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 2.4e-73 279.6 251 58.6
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 2.4e-73 279.6 245 58.8
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 3.1e-73 279.3 258 57.4
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 4.0e-73 278.9 245 57.1
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 9.0e-73 277.7 256 57.4
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 9.0e-73 277.7 245 56.7
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.2e-72 277.3 245 57.1
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 4.4e-72 275.4 220 61.8
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 9.9e-72 274.2 233 58.8
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 1.3e-71 273.9 223 63.2
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 1.3e-71 273.9 219 63.5
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 2.9e-71 272.7 213 65.3
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 4.9e-71 271.9 200 68.0
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 1.4e-70 270.4 216 61.6
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 1.4e-70 270.4 226 60.2
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 4.2e-70 268.9 256 56.2
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 5.4e-70 268.5 251 58.2
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 5.4e-70 268.5 247 55.9
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 1.2e-69 267.3 226 58.8
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 1.2e-69 267.3 264 56.4
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.1e-69 266.5 253 54.9
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 2.1e-69 266.5 265 54.7
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 6.0e-69 265.0 199 65.8
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 1.0e-68 264.2 252 58.3
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 3.0e-68 262.7 265 54.0
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 5.1e-68 261.9 250 57.2
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 1.5e-67 260.4 207 62.8
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 1.5e-67 260.4 248 58.9
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 1.5e-67 260.4 254 56.7
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 4.3e-67 258.8 237 57.8
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 7.3e-67 258.1 260 53.1
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 7.3e-67 258.1 251 56.6
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 9.6e-67 257.7 236 56.8
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 1.3e-66 257.3 256 53.9
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 1.3e-66 257.3 216 60.2
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.6e-66 256.9 221 60.6
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 2.8e-66 256.1 256 55.9
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 4.8e-66 255.4 249 54.2
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 4.8e-66 255.4 239 56.9
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 1.1e-65 254.2 242 55.0
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 1.4e-65 253.8 247 55.5
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 2.4e-65 253.1 259 52.5
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 4.0e-65 252.3 199 61.3
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 9.0e-65 251.1 255 53.3
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 2.0e-64 250.0 219 57.5
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 2.0e-64 250.0 224 54.5
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 4.5e-64 248.8 221 56.6
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 7.6e-64 248.1 202 64.4
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.3e-63 247.3 214 57.5
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 1.7e-63 246.9 164 71.3
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 1.7e-63 246.9 215 57.2
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 3.8e-63 245.7 214 57.0
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 8.4e-63 244.6 214 57.0
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 1.1e-62 244.2 245 54.7
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 1.4e-62 243.8 237 53.6
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.4e-62 243.8 214 57.0
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 3.2e-62 242.7 252 51.6
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 2.1e-61 240.0 213 57.7
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 2.7e-61 239.6 214 57.9
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 4.8e-58 228.8 262 46.6
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 4.8e-58 228.8 218 55.5
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.1e-57 227.6 184 63.6
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 2.4e-57 226.5 135 88.1
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 1.2e-56 224.2 158 65.8
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 1.5e-56 223.8 255 47.8
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.7e-55 220.3 177 62.7
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 2.2e-55 219.9 240 49.6
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 2.9e-55 219.5 214 50.5
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 3.8e-55 219.2 198 57.1
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 1.6e-53 213.8 251 48.6
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 6.0e-53 211.8 267 47.6
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 6.0e-53 211.8 214 51.9
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 5.1e-52 208.8 162 63.6
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.1e-51 207.6 165 62.4
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 1.5e-51 207.2 254 49.6
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 3.7e-50 202.6 260 54.2
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 5.0e-47 192.2 183 57.9
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 3.5e-45 186.0 173 54.9
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 8.2e-42 174.9 122 68.0
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 1.5e-40 170.6 170 51.2
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 6.1e-37 158.7 170 48.8
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 3.4e-32 142.9 127 60.6
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 6.1e-29 132.1 132 51.5
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 2.3e-28 130.2 130 54.6
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 2.0e-27 127.1 142 50.0
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 2.8e-26 123.2 193 44.0
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 2.8e-26 123.2 189 40.2
C04p35970 Brassica napus HOM05D005088 ORTHO05D017652 1.8e-25 120.6 169 46.7
BcaC02g09844 Brassica carinata HOM05D005088 ORTHO05D017652 4.1e-25 119.4 170 45.9
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 4.4e-19 99.4 137 45.3
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 8.2e-18 95.1 154 41.6
C09p52510 Brassica napus HOM05D005088 ORTHO05D017652 1.1e-17 94.7 61 78.7
BolC9t58117H Brassica oleracea HOM05D005088 ORTHO05D017652 7.0e-17 92.0 61 77.0
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 1.6e-16 90.9 72 65.3
SpUn0056_0040 Schrenkiella parvula HOM05D005088 ORTHO05D017652 1.6e-16 90.9 58 77.6
BolC2t09028H Brassica oleracea HOM05D005088 ORTHO05D017652 8.5e-15 85.1 61 73.8
C05p10570 Brassica napus HOM05D005088 ORTHO05D017652 7.2e-14 82.0 61 72.1
C06p46790 Brassica napus HOM05D005088 ORTHO05D017652 7.2e-14 82.0 52 78.8
Cc02_g24380 Coffea canephora HOM05D005088 ORTHO05D006914 1.9e-06 57.4 57 49.1


User provided reference genes

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