Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 0.0e+00 1310.8 669 100.0
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 0.0e+00 1275.8 676 93.8
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 0.0e+00 1252.7 679 91.2
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 0.0e+00 1234.9 673 90.5
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 0.0e+00 1230.3 673 89.3
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 0.0e+00 1226.8 674 89.5
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 0.0e+00 1223.4 676 88.9
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 0.0e+00 1223.4 675 89.0
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 0.0e+00 1222.6 676 88.9
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 0.0e+00 1222.2 676 89.6
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 0.0e+00 1221.8 676 88.8
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 0.0e+00 1221.1 675 88.9
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 0.0e+00 1137.9 677 82.3
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 0.0e+00 1107.0 670 80.7
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 6.0e-278 960.7 673 71.5
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 9.5e-276 953.4 682 71.8
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 1.4e-274 949.5 678 70.1
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 2.3e-274 948.7 678 70.6
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 9.8e-273 943.3 622 73.0
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 1.3e-269 932.9 624 72.1
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 2.3e-269 932.2 673 69.7
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 1.9e-268 929.1 661 69.7
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 9.5e-268 926.8 640 70.6
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 8.1e-267 923.7 688 68.6
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 1.8e-266 922.5 684 68.7
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 2.3e-266 922.2 681 68.4
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 1.2e-265 919.8 674 68.8
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 7.6e-265 917.1 681 68.0
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 9.9e-265 916.8 673 68.8
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 1.9e-263 912.5 680 68.2
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 2.4e-263 912.1 676 67.9
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 8.6e-261 903.7 664 66.6
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 1.5e-260 902.9 679 68.2
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 4.7e-259 897.9 667 66.9
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 8.1e-259 897.1 686 67.3
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 1.8e-258 896.0 673 67.0
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 1.8e-258 896.0 671 66.3
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 2.0e-257 892.5 675 66.7
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.6e-257 892.1 667 66.6
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 2.6e-257 892.1 679 67.6
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 5.8e-257 891.0 665 68.1
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 7.6e-257 890.6 678 66.4
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 1.7e-256 889.4 671 66.8
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 3.8e-256 888.3 681 67.7
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 3.8e-256 888.3 672 69.0
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 4.9e-256 887.9 627 69.2
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 8.4e-256 887.1 617 70.0
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.4e-255 886.3 626 69.0
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 1.4e-255 886.3 626 69.6
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 1.9e-255 885.9 636 67.9
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 4.2e-255 884.8 628 68.5
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 1.6e-254 882.9 683 66.6
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.1e-254 882.5 626 68.4
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 2.7e-254 882.1 673 66.6
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 2.5e-252 875.5 671 65.9
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 9.6e-252 873.6 603 70.0
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 1.6e-251 872.8 673 64.9
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 2.1e-251 872.5 680 66.2
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 3.6e-251 871.7 603 69.5
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 8.1e-251 870.5 639 68.9
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 8.1e-251 870.5 677 67.8
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 1.4e-250 869.8 628 68.9
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 1.4e-250 869.8 664 68.4
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 2.4e-250 869.0 679 67.5
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 6.9e-250 867.5 673 66.9
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 9.0e-250 867.1 685 67.6
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 5.8e-249 864.4 683 64.4
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 3.8e-248 861.7 656 66.0
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 4.2e-247 858.2 622 67.4
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 5.4e-247 857.8 669 66.8
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 9.3e-247 857.1 668 66.5
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 1.2e-246 856.7 667 66.3
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 1.3e-245 853.2 679 63.9
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 8.7e-245 850.5 683 62.5
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 1.5e-244 849.7 674 65.7
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 3.1e-242 842.0 609 66.8
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 9.0e-242 840.5 677 64.8
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 3.8e-240 835.1 627 65.1
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 2.4e-234 815.8 669 61.9
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 5.8e-233 811.2 652 62.9
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 7.9e-230 800.8 615 63.9
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 5.9e-225 784.6 790 55.2
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 5.0e-224 781.6 640 62.3
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 1.1e-220 770.4 550 70.2
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 1.2e-217 760.4 802 53.4
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 1.3e-216 756.9 554 70.0
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 1.3e-216 756.9 629 62.8
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 2.5e-215 752.7 551 70.1
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 4.2e-215 751.9 585 62.7
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 5.5e-215 751.5 662 58.8
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 2.0e-212 743.0 550 66.7
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 6.7e-205 718.0 663 58.2
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 1.8e-202 709.9 594 63.3
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 5.5e-183 645.2 577 56.3
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 6.8e-181 638.3 464 67.2
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 2.3e-173 613.2 786 46.7
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 2.4e-149 533.5 430 61.9
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 1.7e-136 490.7 368 67.7
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 1.8e-125 454.1 450 52.2
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 1.4e-114 417.9 531 45.4
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 8.5e-107 392.1 550 42.9
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 3.2e-106 390.2 341 59.8
Ca_15265_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 2.2e-94 350.9 280 62.9
FAN21G1369 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.8e-86 323.9 327 53.8
FAN21G3066 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.8e-86 323.9 327 53.8
unitig_0.g1069 Utricularia gibba HOM05D006589 ORTHO05D008350 3.2e-82 310.5 263 58.9
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 5.9e-76 289.7 561 34.9
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 5.0e-75 286.6 235 63.8
ATR0686G112 Amborella trichopoda HOM05D006589 ORTHO05D008350 1.1e-66 258.8 241 54.8
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 2.0e-52 211.5 574 28.4
HPP92_003575 Vanilla planifolia HOM05D006589 ORTHO05D008350 6.0e-52 209.9 243 53.1
SEGI_40144 Sequoiadendron giganteum HOM05D006589 ORTHO05D008350 1.0e-43 182.6 256 40.6
CDE09G0508 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 2.8e-33 147.9 184 44.6
FAN25G1587 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.8e-33 147.9 135 57.0
arahy.Tifrunner.gnm1.ann1.Q1JBFY Arachis hypogaea HOM05D006589 ORTHO05D008350 6.2e-33 146.7 124 57.3
arahy.Tifrunner.gnm1.ann1.85RMBE Arachis hypogaea HOM05D006589 ORTHO05D008350 9.0e-24 116.3 124 50.8
MCO14G318 Micromonas commoda HOM05D006589 ORTHO05D008350 1.6e-09 68.9 124 36.3


User provided reference genes

Program Settings