Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 5.7e-195 684.1 354 100.0
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 6.6e-167 590.9 363 83.2
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 4.3e-166 588.2 363 84.0
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 2.0e-163 579.3 360 82.5
Thhalv10010497m.g Eutrema salsugineum HOM05D006818 ORTHO05D008674 7.0e-161 570.9 354 82.8
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 4.9e-154 548.1 355 81.4
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 3.2e-153 545.4 355 80.8
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 5.4e-153 544.7 355 80.8
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 1.3e-151 540.0 355 80.0
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 1.3e-151 540.0 355 80.0
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 1.7e-151 539.7 355 80.0
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 1.4e-140 503.4 319 80.9
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 3.6e-133 478.8 358 71.8
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 2.1e-125 453.0 316 71.8
CSS0009238 Camellia sinensis var. sinensis HOM05D006818 ORTHO05D008674 3.4e-123 445.7 308 71.8
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 3.4e-123 445.7 306 70.9
Manes.15G074101 Manihot esculenta HOM05D006818 ORTHO05D008674 2.9e-122 442.6 307 71.7
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 3.8e-122 442.2 308 71.1
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 8.4e-122 441.0 308 72.4
FvH4_3g22121 Fragaria vesca HOM05D006818 ORTHO05D008674 7.1e-121 438.0 311 70.1
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 9.3e-121 437.6 318 69.8
CANSAT25G1970 Cannabis sativa HOM05D006818 ORTHO05D008674 1.2e-120 437.2 309 70.2
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 1.2e-120 437.2 307 70.7
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 1.2e-120 437.2 309 70.9
Dinv22282 Davidia involucrata HOM05D006818 ORTHO05D008674 1.6e-120 436.8 307 70.7
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 1.6e-120 436.8 296 72.6
Rhsim06G0214800 Rhododendron simsii HOM05D006818 ORTHO05D008674 2.1e-120 436.4 310 70.3
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 3.5e-120 435.6 308 69.8
GSVIVG01001999001 Vitis vinifera HOM05D006818 ORTHO05D008674 3.5e-120 435.6 316 69.6
Eucgr.F03445 Eucalyptus grandis HOM05D006818 ORTHO05D008674 4.6e-120 435.3 315 68.3
Cpa.g.sc97.37 Carica papaya HOM05D006818 ORTHO05D008674 6.0e-120 434.9 307 72.0
RcHm_v2.0_Chr5g0037981 Rosa chinensis HOM05D006818 ORTHO05D008674 7.9e-120 434.5 308 70.1
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 1.3e-119 433.7 307 70.4
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 1.8e-119 433.3 310 70.0
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 1.8e-119 433.3 310 69.7
Thecc.07G044200 Theobroma cacao HOM05D006818 ORTHO05D008674 2.3e-119 433.0 308 70.8
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 3.0e-119 432.6 314 67.8
Lj8A167T47 Lonicera japonica HOM05D006818 ORTHO05D008674 3.9e-119 432.2 303 69.6
Duzib213G0630 Durio zibethinus HOM05D006818 ORTHO05D008674 5.1e-119 431.8 308 70.1
Glyma.02G289400 Glycine max HOM05D006818 ORTHO05D008674 5.1e-119 431.8 305 69.8
Glyma.14G025600 Glycine max HOM05D006818 ORTHO05D008674 5.1e-119 431.8 305 69.5
Potri.001G420800 Populus trichocarpa HOM05D006818 ORTHO05D008674 6.7e-119 431.4 309 70.9
QL08p012092 Quercus lobata HOM05D006818 ORTHO05D008674 1.5e-118 430.3 306 70.6
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.9e-118 429.9 284 73.2
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 4.3e-118 428.7 310 69.7
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 5.6e-118 428.3 349 63.9
Sopen12g001170 Solanum pennellii HOM05D006818 ORTHO05D008674 5.6e-118 428.3 305 69.8
Ca_06305_v3 Cicer arietinum L. HOM05D006818 ORTHO05D008674 9.6e-118 427.6 307 69.7
ECA236G4406 Erigeron canadensis HOM05D006818 ORTHO05D008674 1.3e-117 427.2 315 68.9
QL08p011921 Quercus lobata HOM05D006818 ORTHO05D008674 1.3e-117 427.2 306 69.6
Medtr5g092080 Medicago truncatula HOM05D006818 ORTHO05D008674 1.6e-117 426.8 316 68.4
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.1e-117 426.4 264 76.9
Solyc12g005180.2 Solanum lycopersicum HOM05D006818 ORTHO05D008674 2.8e-117 426.0 291 72.2
Prupe.4G208600 Prunus persica HOM05D006818 ORTHO05D008674 4.8e-117 425.2 308 69.2
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 6.2e-117 424.9 304 69.1
PGR031G1507 Punica granatum HOM05D006818 ORTHO05D008674 6.2e-117 424.9 317 66.2
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 1.4e-116 423.7 291 71.8
Psat2g015280 Pisum sativum HOM05D006818 ORTHO05D008674 1.4e-116 423.7 310 67.7
Ciclev10008835m.g Citrus clementina HOM05D006818 ORTHO05D008674 3.1e-116 422.5 310 68.7
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 4.0e-116 422.2 289 72.7
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 5.3e-116 421.8 308 69.5
TAR627G0163 Trochodendron aralioides HOM05D006818 ORTHO05D008674 6.9e-116 421.4 315 65.7
CAN.G315.6 Capsicum annuum HOM05D006818 ORTHO05D008674 2.0e-115 419.9 304 68.4
Lsat_1_v5_gn_7_109080 Lactuca sativa HOM05D006818 ORTHO05D008674 2.0e-115 419.9 311 67.5
PGSC0003DMG400001099 Solanum tuberosum HOM05D006818 ORTHO05D008674 3.4e-115 419.1 263 75.7
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 5.8e-115 418.3 308 66.9
PSO210G7832 Papaver somniferum HOM05D006818 ORTHO05D008674 7.6e-115 417.9 294 70.7
Nitab4.5_0000653g0090 Nicotiana tabacum HOM05D006818 ORTHO05D008674 9.9e-115 417.5 293 69.3
Nitab4.5_0000749g0100 Nicotiana tabacum HOM05D006818 ORTHO05D008674 9.9e-115 417.5 304 68.4
Sabra16G0285700 Salix brachista HOM05D006818 ORTHO05D008674 3.8e-114 415.6 327 66.1
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 4.9e-114 415.2 331 64.0
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 1.9e-113 413.3 320 65.3
PSO832G0412 Papaver somniferum HOM05D006818 ORTHO05D008674 1.9e-113 413.3 292 69.9
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 1.9e-113 413.3 293 69.6
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 1.6e-112 410.2 305 66.9
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 6.0e-112 408.3 345 63.8
HanXRQChr15g0494291 Helianthus annuus HOM05D006818 ORTHO05D008674 7.9e-112 407.9 293 68.6
CDE01G0156 Ceratophyllum demersum HOM05D006818 ORTHO05D008674 1.8e-111 406.8 317 63.4
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.9e-111 405.6 250 76.8
CiPaw.11G186900 Carya illinoinensis HOM05D006818 ORTHO05D008674 6.7e-111 404.8 306 66.0
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 1.9e-110 403.3 273 71.4
Aqoxy1G03627 Aquilegia oxysepala HOM05D006818 ORTHO05D008674 5.6e-110 401.7 316 65.5
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 5.6e-110 401.7 310 63.2
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 7.4e-110 401.4 309 65.4
Atru.BG.12.p Acer truncatum HOM05D006818 ORTHO05D008674 2.1e-109 399.8 232 81.0
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 2.8e-109 399.4 319 65.2
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 4.8e-109 398.7 311 65.9
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 6.2e-109 398.3 321 63.6
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 8.2e-109 397.9 311 65.9
ATR0752G046 Amborella trichopoda HOM05D006818 ORTHO05D008674 3.1e-108 396.0 262 70.6
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 6.9e-108 394.8 363 57.9
QL08p012107 Quercus lobata HOM05D006818 ORTHO05D008674 6.9e-108 394.8 247 74.9
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 3.2e-105 386.0 345 59.4
MD03G1208100 Malus domestica HOM05D006818 ORTHO05D008674 4.2e-105 385.6 302 64.6
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 1.8e-103 380.2 234 75.2
AUR62006731 Chenopodium quinoa HOM05D006818 ORTHO05D008674 1.1e-102 377.5 217 81.1
vmacro11742 Vaccinium macrocarpon HOM05D006818 ORTHO05D008674 9.4e-97 357.8 320 61.9
Actinidia05109 Actinidia chinensis HOM05D006818 ORTHO05D008674 4.3e-94 349.0 304 60.2
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 1.3e-93 347.4 300 59.0
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 9.1e-92 341.3 255 63.5
AUR62000376 Chenopodium quinoa HOM05D006818 ORTHO05D008674 9.1e-84 314.7 190 77.4
Pp3c9_6110 Physcomitrium patens HOM05D006818 ORTHO05D008674 1.4e-81 307.4 304 51.0
Hma1.2p1_1271F.1_g271840 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 1.9e-81 307.0 183 78.1
Hma1.2p1_1609F.1_g293429 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 1.9e-81 307.0 183 78.1
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 2.0e-78 297.0 215 69.3
TPR.G29121 Trifolium pratense HOM05D006818 ORTHO05D008674 3.8e-74 282.7 197 70.1
SEGI_29406 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 6.7e-71 271.9 196 67.9
AagrBONN_evm.TU.Sc2ySwM_228.3024 Anthoceros agrestis HOM05D006818 ORTHO05D008674 9.4e-65 251.5 189 63.5
TPR.G29124 Trifolium pratense HOM05D006818 ORTHO05D008674 7.5e-62 241.9 153 75.8
CBR_g57971 Chara braunii HOM05D006818 ORTHO05D008674 1.4e-55 221.1 160 65.0
PRCOL_00005879 Prasinoderma coloniale HOM05D006818 ORTHO05D008674 3.2e-44 183.3 192 47.4
Glyma.14G153300 Glycine max HOM05D006818 ORTHO05D008674 5.8e-30 136.0 78 75.6
RcHm_v2.0_Chr3g0496801 Rosa chinensis HOM05D006818 ORTHO05D008674 1.1e-23 115.2 118 54.2
Actinidia09914 Actinidia chinensis HOM05D006818 ORTHO05D008674 2.1e-19 100.9 59 81.4
Ah.06g195920 Amaranthus hybridus HOM05D001023 ORTHO05D000912 1.2e-14 85.1 125 44.0
SEGI_26249 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 4.2e-12 76.6 49 69.4
CARHR156600 Cardamine hirsuta HOM05D006818 ORTHO05D008674 1.3e-10 71.6 88 58.0
Mapoly0161s0027 Marchantia polymorpha HOM05D003204 ORTHO05D003566 2.4e-07 60.8 174 28.7
BcaB08g36152 Brassica carinata HOM05D003204 ORTHO05D003566 1.5e-06 58.2 170 27.6
Sp6g19740 Schrenkiella parvula HOM05D003204 ORTHO05D003566 2.6e-06 57.4 170 27.1
Solyc12g010320.2 Solanum lycopersicum HOM05D003204 ORTHO05D003566 3.4e-06 57.0 181 28.7
Sopen12g005200 Solanum pennellii HOM05D003204 ORTHO05D003566 3.4e-06 57.0 181 28.7
Lalb_Chr07g0179701 Lupinus albus HOM05D003204 ORTHO05D003566 4.5e-06 56.6 171 28.1
Sed0001393 Sechium edule HOM05D006818 ORTHO05D372820 4.5e-06 56.6 253 27.3
arahy.Tifrunner.gnm1.ann1.I77GVJ Arachis hypogaea HOM05D003204 ORTHO05D003566 5.8e-06 56.2 171 28.7
BcaB01g04554 Brassica carinata HOM05D003204 ORTHO05D003566 5.8e-06 56.2 180 26.7
C03p14580 Brassica napus HOM05D003204 ORTHO05D003566 5.8e-06 56.2 180 26.7
BolC3t13899H Brassica oleracea HOM05D003204 ORTHO05D003566 5.8e-06 56.2 180 26.7


User provided reference genes

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