Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G46770 Arabidopsis thaliana HOM05D009243 ORTHO05D011355 1.5e-155 552.7 277 100.0
AL5G25750 Arabidopsis lyrata HOM05D009243 ORTHO05D011355 2.8e-133 478.8 282 86.9
AL4G43980 Arabidopsis lyrata HOM05D009243 ORTHO05D011355 5.1e-98 361.7 284 69.4
Carub.0004s2748 Capsella rubella HOM05D009243 ORTHO05D011355 8.6e-98 360.9 274 69.3
CARHR154900 Cardamine hirsuta HOM05D009243 ORTHO05D011355 1.4e-71 273.9 212 64.6
Thhalv10014488m.g Eutrema salsugineum HOM05D009243 ORTHO05D011355 3.2e-36 156.4 260 36.5
CARHR273770 Cardamine hirsuta HOM05D009243 ORTHO05D011355 7.2e-36 155.2 263 40.7
AL8G36730 Arabidopsis lyrata HOM05D009243 ORTHO05D011355 1.0e-34 151.4 309 33.3
AL8G36740 Arabidopsis lyrata HOM05D009243 ORTHO05D011355 2.3e-34 150.2 283 32.5
Carub.0008s2085 Capsella rubella HOM05D009243 ORTHO05D011355 2.6e-33 146.7 313 32.6
Sp6g21790 Schrenkiella parvula HOM05D009243 ORTHO05D011355 4.4e-33 146.0 273 34.4
AT5G60130 Arabidopsis thaliana HOM05D009243 ORTHO05D011355 3.7e-32 142.9 303 33.7
Carub.0008s2086 Capsella rubella HOM05D009243 ORTHO05D011355 2.7e-30 136.7 294 30.3
AT5G60140 Arabidopsis thaliana HOM05D009243 ORTHO05D011355 4.5e-30 136.0 319 30.1
Aa31LG1G12320 Aethionema arabicum HOM05D009243 ORTHO05D011355 8.5e-29 131.7 388 28.6
BcaB05g22623 Brassica carinata HOM05D009243 ORTHO05D011355 2.1e-27 127.1 291 32.0
C02p11860 Brassica napus HOM05D009243 ORTHO05D011355 2.1e-27 127.1 300 32.7
BraA02t05740Z Brassica rapa HOM05D009243 ORTHO05D011355 2.1e-27 127.1 300 32.7
CARHR273790 Cardamine hirsuta HOM05D009243 ORTHO05D011355 1.0e-26 124.8 341 29.3
Aa31LG4G14930 Aethionema arabicum HOM05D009243 ORTHO05D011355 2.3e-26 123.6 241 35.7
BolC9t58129H Brassica oleracea HOM05D009243 ORTHO05D011355 4.4e-25 119.4 283 29.7
C09p52630 Brassica napus HOM05D009243 ORTHO05D011355 5.7e-25 119.0 276 30.1
BolC2t07283H Brassica oleracea HOM05D009243 ORTHO05D011355 9.8e-25 118.2 296 30.7
BraA10t43811Z Brassica rapa HOM05D009243 ORTHO05D011355 2.2e-24 117.1 284 29.2
THA.LOC104807272 Tarenaya hassleriana HOM05D006628 ORTHO05D000088 5.4e-23 112.5 290 28.6
Carub.0008s2087 Capsella rubella HOM05D009243 ORTHO05D011355 9.1e-23 111.7 368 28.0
AL8G36750 Arabidopsis lyrata HOM05D009243 ORTHO05D011355 3.5e-22 109.8 342 28.7
Sp6g21780 Schrenkiella parvula HOM05D009243 ORTHO05D011355 1.0e-21 108.2 250 30.4
AT5G60142 Arabidopsis thaliana HOM05D009243 ORTHO05D011355 1.4e-18 97.8 131 38.9
A10p17290 Brassica napus HOM05D009243 ORTHO05D011355 6.8e-18 95.5 125 40.8
BcaNung06170 Brassica carinata HOM05D009243 ORTHO05D011355 7.5e-17 92.0 257 28.4
A10p17280 Brassica napus HOM05D009243 ORTHO05D011355 4.9e-16 89.4 267 26.2
C08p28520 Brassica napus HOM05D006628 ORTHO05D000088 1.8e-15 87.4 258 24.4
A02p06570 Brassica napus HOM05D009243 ORTHO05D011355 7.7e-14 82.0 236 30.1
THA.LOC104807340 Tarenaya hassleriana HOM05D006628 ORTHO05D000088 1.3e-13 81.3 278 28.1
C07p60560 Brassica napus HOM05D006628 ORTHO05D000088 5.0e-13 79.3 352 23.0
BolC7t46487H Brassica oleracea HOM05D006628 ORTHO05D000088 8.6e-13 78.6 352 23.0
AT3G06160 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 1.5e-12 77.8 316 22.5
Aa31LG7G14390 Aethionema arabicum HOM05D006628 ORTHO05D000088 2.5e-12 77.0 285 23.5
BraA03t15364Z Brassica rapa HOM05D006628 ORTHO05D000088 9.5e-12 75.1 356 23.0
A03p62870 Brassica napus HOM05D006628 ORTHO05D000088 1.2e-11 74.7 121 33.9
Carub.0008s1823 Capsella rubella HOM05D006628 ORTHO05D000088 1.6e-11 74.3 298 24.5
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 2.8e-11 73.6 277 23.5
CsaV3_6G042810 Cucumis sativus L. HOM05D000823 ORTHO05D000088 8.0e-11 72.0 282 25.2
MELO3C007521.2 Cucumis melo HOM05D000823 ORTHO05D000088 1.0e-10 71.6 277 25.3
CARHR271470 Cardamine hirsuta HOM05D006628 ORTHO05D000088 1.8e-10 70.9 313 24.0
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 8.9e-10 68.6 279 24.0
arahy.Tifrunner.gnm1.ann1.K3F6Y2 Arachis hypogaea HOM05D000823 ORTHO05D000088 8.9e-10 68.6 284 23.6
CSS0012563 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 8.9e-10 68.6 159 25.8
Sp6g02680 Schrenkiella parvula HOM05D006628 ORTHO05D000088 8.9e-10 68.6 156 30.1
Aa31LG10G8500 Aethionema arabicum HOM05D006628 ORTHO05D000088 1.2e-09 68.2 257 23.0
Carub.0006s1299 Capsella rubella HOM05D006628 ORTHO05D000088 2.0e-09 67.4 123 29.3
TWI31G0648 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 2.0e-09 67.4 291 23.0
CARHR080680 Cardamine hirsuta HOM05D006628 ORTHO05D000088 2.6e-09 67.0 315 22.5
PGR102G2553 Punica granatum HOM05D000823 ORTHO05D000088 2.6e-09 67.0 251 25.9
PGSC0003DMG400045703 Solanum tuberosum HOM05D008110 ORTHO05D000088 3.4e-09 66.6 249 24.5
Aa31LG10G8440 Aethionema arabicum HOM05D006628 ORTHO05D000088 4.4e-09 66.2 259 22.0
AL8G33760 Arabidopsis lyrata HOM05D006628 ORTHO05D000088 5.7e-09 65.9 291 23.7
Solyc02g026080.2 Solanum lycopersicum HOM05D008110 ORTHO05D000088 7.5e-09 65.5 156 27.6
Aa31LG5G11590 Aethionema arabicum HOM05D006628 ORTHO05D000088 1.3e-08 64.7 253 24.9
Gohir.A05G199000 Gossypium hirsutum HOM05D000823 ORTHO05D000088 1.3e-08 64.7 161 29.2
Sp6g19410 Schrenkiella parvula HOM05D006628 ORTHO05D000088 1.3e-08 64.7 259 24.3
Sopen02g009350 Solanum pennellii HOM05D008110 ORTHO05D000088 1.7e-08 64.3 130 28.5
Rhsim10G0125600 Rhododendron simsii HOM05D000823 ORTHO05D000088 2.2e-08 63.9 294 26.5
Gohir.D05G201700 Gossypium hirsutum HOM05D000823 ORTHO05D000088 2.9e-08 63.5 144 29.2
Gorai.009G207400 Gossypium raimondii HOM05D000823 ORTHO05D000088 2.9e-08 63.5 144 29.2
BcaB04g20080 Brassica carinata HOM05D000823 ORTHO05D000088 3.7e-08 63.2 282 24.1
Gohir.D09G086300 Gossypium hirsutum HOM05D000823 ORTHO05D000088 4.9e-08 62.8 271 22.9
Sed0023289 Sechium edule HOM05D000823 ORTHO05D000088 4.9e-08 62.8 269 23.0
AT3G06220 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 6.4e-08 62.4 124 28.2
A03p63270 Brassica napus HOM05D006628 ORTHO05D000088 6.4e-08 62.4 237 22.8
C02p39080 Brassica napus HOM05D006628 ORTHO05D000088 8.3e-08 62.0 158 27.2
Carub.0007s0593 Capsella rubella HOM05D006628 ORTHO05D000088 8.3e-08 62.0 113 31.0
Medtr1g021330 Medicago truncatula HOM05D000823 ORTHO05D000088 8.3e-08 62.0 137 27.7
TWI31G0651 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 8.3e-08 62.0 112 28.6
Thhalv10026054m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 1.4e-07 61.2 259 25.5
BolC2t09918H Brassica oleracea HOM05D006628 ORTHO05D000088 1.8e-07 60.8 158 27.2
Medtr1g021320 Medicago truncatula HOM05D000823 ORTHO05D000088 1.8e-07 60.8 210 24.3
BcaNung06129 Brassica carinata HOM05D000765 ORTHO05D000613 2.4e-07 60.5 88 37.5
A02p08260 Brassica napus HOM05D006628 ORTHO05D000088 3.2e-07 60.1 262 24.0
BraA02t05898Z Brassica rapa HOM05D006628 ORTHO05D000088 3.2e-07 60.1 262 24.0
PGSC0003DMG400036386 Solanum tuberosum HOM05D008110 ORTHO05D000088 3.2e-07 60.1 117 28.2
Sed0022882 Sechium edule HOM05D000823 ORTHO05D000088 4.1e-07 59.7 283 20.8
BcaC03g16172 Brassica carinata HOM05D006628 ORTHO05D000088 5.4e-07 59.3 159 27.0
A02p24960 Brassica napus HOM05D006628 ORTHO05D000088 5.4e-07 59.3 115 28.7
BraA02t07486Z Brassica rapa HOM05D006628 ORTHO05D000088 5.4e-07 59.3 115 28.7
Lj7C16T11 Lonicera japonica HOM05D000395 ORTHO05D000088 5.4e-07 59.3 152 27.6
Medtr1g021350 Medicago truncatula HOM05D000823 ORTHO05D000088 5.4e-07 59.3 76 34.2
Psat6g011600 Pisum sativum HOM05D000823 ORTHO05D000088 5.4e-07 59.3 100 29.0
TWI75G0037 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 5.4e-07 59.3 109 31.2
C05p14930 Brassica napus HOM05D006628 ORTHO05D000088 7.0e-07 58.9 131 28.2
TPR.G15761 Trifolium pratense HOM05D000823 ORTHO05D000088 7.0e-07 58.9 164 25.0
AT1G16640 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 9.2e-07 58.5 124 29.0
C02p13950 Brassica napus HOM05D006628 ORTHO05D000088 9.2e-07 58.5 288 22.9
BolC2t07512H Brassica oleracea HOM05D006628 ORTHO05D000088 9.2e-07 58.5 288 22.9
Phvul.006G100700 Phaseolus vulgaris HOM05D000823 ORTHO05D000088 9.2e-07 58.5 229 24.5
AL1G28810 Arabidopsis lyrata HOM05D006628 ORTHO05D000088 1.2e-06 58.2 113 29.2
BcaB05g23662 Brassica carinata HOM05D006628 ORTHO05D000088 1.2e-06 58.2 157 25.5
A06p12630 Brassica napus HOM05D006628 ORTHO05D000088 1.2e-06 58.2 131 28.2
Dinv26764 Davidia involucrata HOM05D000823 ORTHO05D000088 1.2e-06 58.2 203 23.6
Lalb_Chr14g0368921 Lupinus albus HOM05D000823 ORTHO05D000088 1.2e-06 58.2 76 34.2
Gorai.006G102500 Gossypium raimondii HOM05D000823 ORTHO05D000088 1.6e-06 57.8 269 21.9
Medtr1g021290 Medicago truncatula HOM05D000823 ORTHO05D000088 2.0e-06 57.4 76 34.2
RhsimUnG0089900 Rhododendron simsii HOM05D008110 ORTHO05D000088 2.0e-06 57.4 248 23.4
AT5G57720 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 2.7e-06 57.0 293 22.9
COL.COLO4_26417 Corchorus olitorius HOM05D000823 ORTHO05D000088 2.7e-06 57.0 119 32.8
Lj6C562T8 Lonicera japonica HOM05D000823 ORTHO05D000088 2.7e-06 57.0 295 23.7
Nitab4.5_0001401g0140 Nicotiana tabacum HOM05D008110 ORTHO05D000088 2.7e-06 57.0 110 26.4
BolC2t07514H Brassica oleracea HOM05D006628 ORTHO05D000088 3.5e-06 56.6 286 23.4
Carub.0001s1638 Capsella rubella HOM05D006628 ORTHO05D000088 3.5e-06 56.6 135 27.4
FAN15G0813 Fragaria x ananassa HOM05D000823 ORTHO05D000088 3.5e-06 56.6 118 30.5
Rhsim09G0072000 Rhododendron simsii HOM05D000395 ORTHO05D000088 3.5e-06 56.6 148 22.3
Thecc.08G016900 Theobroma cacao HOM05D000823 ORTHO05D000088 4.6e-06 56.2 143 27.3
Migut.B01167 Erythranthe guttata HOM05D000823 ORTHO05D000088 5.9e-06 55.8 125 28.0
VMungo0235G0001 Vigna mungo HOM05D000823 ORTHO05D000088 5.9e-06 55.8 116 30.2
Sopen05g025010 Solanum pennellii HOM05D008110 ORTHO05D000088 7.8e-06 55.5 130 26.9


User provided reference genes

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