Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 5.8e-98 360.9 185 100.0
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 3.2e-88 328.6 184 92.4
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 8.9e-83 310.5 185 85.4
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 5.8e-82 307.8 185 84.3
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 2.1e-79 299.3 185 81.6
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 2.7e-79 298.9 178 87.1
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.1e-77 293.5 185 81.1
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 3.3e-77 292.0 193 77.7
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 5.6e-77 291.2 185 80.5
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 5.6e-77 291.2 183 79.2
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 5.6e-77 291.2 183 79.2
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 5.6e-77 291.2 183 79.2
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 1.1e-75 287.0 185 80.0
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 2.4e-75 285.8 185 80.0
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 9.0e-75 283.9 186 78.5
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 2.6e-74 282.3 183 76.0
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 2.6e-74 282.3 183 76.0
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 9.9e-74 280.4 185 76.8
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 2.9e-73 278.9 186 75.8
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 4.9e-73 278.1 185 76.8
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.4e-72 276.6 185 75.7
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 4.2e-72 275.0 185 75.7
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 7.1e-72 274.2 185 74.6
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.2e-71 273.5 185 74.6
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 2.7e-71 272.3 185 74.1
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 3.5e-71 271.9 185 74.6
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 1.8e-70 269.6 185 73.0
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 3.0e-70 268.9 185 73.5
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 3.9e-70 268.5 185 74.1
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 5.1e-70 268.1 183 74.3
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 8.7e-70 267.3 185 74.6
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 1.1e-69 266.9 185 73.5
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.1e-69 266.9 185 70.8
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 1.5e-69 266.5 178 75.8
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.5e-69 266.5 178 75.8
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 1.9e-69 266.2 185 71.9
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 4.3e-69 265.0 179 74.9
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 5.6e-69 264.6 185 72.4
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 5.6e-69 264.6 185 70.3
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 7.4e-69 264.2 185 71.4
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 9.6e-69 263.8 185 71.4
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 1.3e-68 263.5 185 73.0
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 1.3e-68 263.5 185 69.2
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.6e-68 263.1 185 70.3
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.1e-68 262.7 185 70.8
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 2.8e-68 262.3 185 71.4
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 2.8e-68 262.3 185 71.4
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.8e-68 262.3 185 70.8
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.8e-68 262.3 185 70.8
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.8e-68 262.3 185 72.4
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 3.6e-68 261.9 185 71.4
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 4.8e-68 261.5 185 71.4
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 4.8e-68 261.5 185 71.4
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 4.8e-68 261.5 185 71.9
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 4.8e-68 261.5 183 72.1
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 6.2e-68 261.2 184 69.6
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 8.1e-68 260.8 185 68.6
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 1.1e-67 260.4 185 70.8
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 1.1e-67 260.4 185 73.0
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.8e-67 259.6 185 70.8
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.8e-67 259.6 185 70.8
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 2.4e-67 259.2 185 71.4
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.4e-67 259.2 185 70.3
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 3.1e-67 258.8 183 70.5
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 6.9e-67 257.7 181 70.7
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 9.0e-67 257.3 186 72.0
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 9.0e-67 257.3 185 69.7
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.2e-66 256.9 185 71.9
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 2.0e-66 256.1 185 66.5
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.6e-66 255.8 180 71.7
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.6e-66 255.8 185 70.3
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 3.4e-66 255.4 185 68.1
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 3.4e-66 255.4 180 68.9
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.4e-66 255.4 183 68.9
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.4e-66 255.4 183 68.3
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 3.4e-66 255.4 183 68.3
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 4.5e-66 255.0 185 70.3
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 5.8e-66 254.6 182 71.4
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 7.6e-66 254.2 185 68.6
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 9.9e-66 253.8 183 71.0
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.3e-65 253.4 185 69.2
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 1.3e-65 253.4 185 68.6
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 1.7e-65 253.1 177 72.9
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 2.9e-65 252.3 178 69.7
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 3.8e-65 251.9 182 70.3
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.9e-65 251.5 185 68.6
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.1e-64 250.4 183 69.4
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.9e-64 249.6 182 67.6
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 1.9e-64 249.6 183 69.4
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 1.9e-64 249.6 179 70.4
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 3.2e-64 248.8 170 71.8
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 4.2e-64 248.4 183 69.4
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 4.2e-64 248.4 178 68.0
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 5.5e-64 248.1 183 65.6
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 2.7e-63 245.7 183 68.3
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 3.5e-63 245.4 181 65.7
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 3.5e-63 245.4 183 67.8
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 4.6e-63 245.0 183 67.8
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 4.6e-63 245.0 187 72.2
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 4.6e-63 245.0 183 68.3
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 6.0e-63 244.6 183 66.1
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 7.9e-63 244.2 185 67.6
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 1.3e-62 243.4 185 63.8
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.3e-62 243.4 183 67.2
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 6.7e-62 241.1 186 64.5
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 8.7e-62 240.7 188 65.4
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 1.5e-61 240.0 183 67.8
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 1.5e-61 240.0 179 65.9
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 1.9e-61 239.6 185 66.5
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.9e-61 239.6 186 64.0
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 2.5e-61 239.2 181 65.7
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 9.6e-61 237.3 184 65.8
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 9.6e-61 237.3 185 65.9
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 9.6e-61 237.3 186 66.7
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 1.3e-60 236.9 181 65.7
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 1.3e-60 236.9 179 64.8
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.6e-60 236.5 186 63.4
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 2.1e-60 236.1 176 65.9
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 2.8e-60 235.7 186 63.4
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 8.1e-60 234.2 178 66.3
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.6e-58 229.2 185 62.2
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 2.6e-58 229.2 180 63.3
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 5.8e-58 228.0 179 61.5
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 1.7e-57 226.5 179 63.7
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 2.2e-57 226.1 179 63.7
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 2.2e-57 226.1 177 63.8
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 2.9e-57 225.7 183 61.7
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 3.8e-57 225.3 186 59.7
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 8.4e-57 224.2 183 66.1
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 4.6e-55 218.4 185 61.1
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 2.3e-54 216.1 180 60.0
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 1.4e-48 196.8 177 61.6
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 4.3e-45 185.3 166 62.7
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 4.5e-42 175.3 184 52.2
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 8.5e-41 171.0 115 70.4
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 2.3e-38 162.9 197 45.7
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.0e-38 162.5 123 65.0
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 6.9e-35 151.4 183 38.8
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 2.6e-34 149.4 160 48.8
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 4.2e-32 142.1 99 73.7
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.7e-20 102.4 77 67.5
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 3.8e-17 92.4 135 44.4
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 5.2e-14 82.0 57 73.7
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 3.1e-11 72.8 54 63.0
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 3.1e-11 72.8 54 63.0
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 1.0e-06 57.8 35 80.0


User provided reference genes

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