Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 0.0e+00 1222.2 609 100.0
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 0.0e+00 1196.4 610 97.5
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 0.0e+00 1194.5 610 97.7
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 0.0e+00 1157.1 615 94.0
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 0.0e+00 1152.5 609 94.6
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1149.0 613 93.6
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 0.0e+00 1145.2 609 93.6
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1136.3 611 93.3
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1135.9 612 93.5
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 0.0e+00 1135.9 612 93.5
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1133.2 612 92.8
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 0.0e+00 1133.2 612 92.8
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1132.9 615 93.3
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1128.2 612 92.6
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1127.9 612 92.6
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 0.0e+00 1123.6 611 92.6
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 0.0e+00 1117.8 617 90.8
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 0.0e+00 1117.1 626 90.4
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 0.0e+00 1080.1 616 87.8
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 0.0e+00 1075.1 612 88.6
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 6.0e-301 1036.9 615 84.2
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.3e-297 1025.0 610 84.1
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 2.9e-295 1018.1 610 83.1
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 6.4e-295 1016.9 618 83.0
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 2.7e-293 1011.5 611 82.8
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 6.0e-293 1010.4 617 82.2
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.7e-292 1008.8 591 84.1
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.7e-292 1008.8 618 81.7
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.3e-292 1008.4 618 82.8
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.3e-292 1008.4 616 81.7
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 5.1e-292 1007.3 612 82.7
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 8.6e-292 1006.5 615 81.1
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 1.5e-291 1005.7 614 81.4
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.9e-291 1005.4 616 80.2
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 1.9e-291 1005.4 616 81.5
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 2.5e-291 1005.0 616 80.2
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 623 81.4
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 623 81.2
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 9.5e-291 1003.0 614 81.3
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 616 81.3
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 2.1e-290 1001.9 612 81.7
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 3.6e-290 1001.1 591 83.2
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 8.1e-290 1000.0 614 81.1
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.1e-289 999.6 609 81.1
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.4e-289 999.2 615 80.5
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.8e-289 998.8 625 80.6
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 1.8e-289 998.8 617 81.2
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 2.3e-289 998.4 611 81.3
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.1e-289 998.0 609 80.8
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 6.8e-289 996.9 557 87.1
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 8.9e-289 996.5 596 83.1
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 8.9e-289 996.5 621 80.2
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 8.9e-289 996.5 613 81.4
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 1.2e-288 996.1 609 81.3
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.5e-288 995.7 616 80.8
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 1.5e-288 995.7 621 82.1
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 2.0e-288 995.3 622 80.7
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 3.4e-288 994.6 614 80.5
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 5.8e-288 993.8 615 80.0
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 2.2e-287 991.9 613 81.1
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.2e-287 991.9 581 82.8
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 2.2e-287 991.9 609 81.3
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 2.9e-287 991.5 573 84.6
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 8.3e-287 989.9 610 81.1
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 8.3e-287 989.9 610 81.1
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 8.3e-287 989.9 626 80.4
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 8.3e-287 989.9 609 80.3
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 1.9e-286 988.8 614 81.3
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.9e-286 988.8 609 80.6
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 1.9e-286 988.8 610 80.8
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 3.2e-286 988.0 621 79.9
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 5.4e-286 987.3 621 79.9
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 7.1e-286 986.9 651 78.0
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.6e-285 985.7 613 80.3
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 2.1e-285 985.3 613 80.3
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.1e-285 985.3 566 85.3
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 3.0e-284 981.5 611 80.7
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 3.9e-284 981.1 610 81.6
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 8.6e-284 979.9 612 79.4
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 8.6e-284 979.9 611 79.4
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 3.3e-283 978.0 612 79.4
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.3e-283 977.6 561 84.5
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 4.3e-283 977.6 593 81.6
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 5.6e-283 977.2 578 82.7
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 5.6e-283 977.2 610 79.7
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 5.6e-283 977.2 572 83.9
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 5.6e-283 977.2 609 80.0
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 7.3e-283 976.9 610 80.3
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 2.1e-282 975.3 631 77.3
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 6.2e-282 973.8 558 85.5
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 1.8e-281 972.2 622 78.9
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 1.8e-281 972.2 628 78.2
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 8.9e-281 969.9 607 79.6
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 4.4e-280 967.6 582 81.8
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 1.3e-279 966.1 611 78.4
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.1e-277 958.7 610 79.5
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 3.5e-277 958.0 588 81.3
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.3e-276 955.3 600 79.8
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 1.5e-275 952.6 563 82.2
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 3.3e-275 951.4 563 82.2
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 5.6e-275 950.7 644 74.8
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.3e-274 949.5 581 79.9
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.1e-273 946.4 568 82.6
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 1.4e-273 946.0 577 82.0
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 1.8e-273 945.7 649 74.0
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 1.2e-272 943.0 618 77.7
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 1.9e-270 935.6 585 77.3
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.3e-268 929.5 688 70.1
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.1e-267 926.4 558 82.4
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.5e-267 926.0 575 78.3
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 5.6e-267 924.1 525 85.3
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.1e-266 922.2 581 77.5
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.5e-264 916.0 599 75.6
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 9.9e-264 913.3 588 74.7
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 1.4e-262 909.4 597 74.4
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 4.6e-261 904.4 616 75.3
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 7.6e-256 887.1 624 74.0
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.9e-254 882.5 558 77.1
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 1.5e-251 872.8 537 80.6
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.1e-246 856.7 619 71.7
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.9e-246 855.9 525 79.4
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 8.7e-244 847.0 624 69.6
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.5e-243 845.5 614 71.0
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 3.9e-236 821.6 606 66.8
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 5.9e-232 807.7 557 69.7
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.3e-223 780.0 490 79.0
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 9.4e-222 773.9 489 77.7
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 1.1e-219 766.9 490 78.6
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 6.3e-218 761.1 482 80.3
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 9.1e-217 757.3 549 66.8
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.1e-209 732.3 426 83.8
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 7.0e-209 731.1 433 82.0
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 1.9e-206 723.0 433 80.6
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 5.5e-206 721.5 490 75.3
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 7.5e-203 711.1 561 62.0
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 6.6e-199 698.0 429 79.7
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 7.8e-184 647.9 403 79.9
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 9.2e-177 624.4 433 74.6
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.8e-170 602.4 587 53.3
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 3.1e-156 556.2 312 87.8
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 6.4e-146 521.9 386 71.5
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 8.2e-125 451.8 340 71.2
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 8.8e-119 431.8 286 76.2
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 3.2e-105 386.7 277 67.5
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 3.6e-88 330.1 216 74.1
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 1.5e-78 298.1 206 75.2
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 7.8e-75 285.8 557 33.6
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.9e-74 283.5 151 89.4
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 3.0e-66 257.3 150 82.0
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 3.5e-59 233.8 131 85.5
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 3.6e-56 223.8 133 76.7
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 1.4e-55 221.9 126 84.9
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 1.7e-53 214.9 116 94.8
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 1.9e-49 201.4 178 61.2
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 4.3e-49 200.3 115 82.6
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 9.6e-49 199.1 114 81.6
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 1.2e-48 198.7 109 87.2
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.7e-48 196.8 140 72.1
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.0e-47 193.7 105 84.8
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 7.1e-44 183.0 115 75.7
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 3.9e-42 177.2 145 65.5
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 9.6e-41 172.6 216 50.0
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 6.2e-40 169.9 250 45.2
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.5e-38 165.2 153 61.4
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 1.0e-26 125.9 116 59.5
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 5.6e-25 120.2 61 91.8
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 1.5e-22 112.1 70 72.9
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.5e-20 104.8 56 89.3
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 2.1e-19 101.7 212 34.0
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.9e-17 95.1 73 65.8
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 4.1e-15 87.4 120 37.5
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 1.1e-12 79.3 67 55.2
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 3.2e-12 77.8 90 51.1


User provided reference genes

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