Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 1.2e-133 479.9 256 100.0
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 2.4e-94 349.4 188 98.9
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 6.1e-90 334.7 188 94.1
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 5.2e-89 331.6 188 94.1
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 2.0e-88 329.7 192 91.7
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 2.0e-88 329.7 192 91.7
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 2.6e-88 329.3 188 93.1
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 7.5e-88 327.8 191 91.6
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 4.1e-86 322.0 189 91.0
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 1.6e-85 320.1 188 89.4
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 2.3e-84 316.2 190 91.1
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 2.3e-84 316.2 190 91.1
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 3.8e-84 315.5 190 90.0
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 4.4e-72 275.4 189 82.5
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 8.3e-71 271.2 191 80.1
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 1.3e-68 263.8 198 75.3
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 5.1e-68 261.9 196 76.0
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 6.6e-68 261.5 191 73.8
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 4.3e-67 258.8 188 79.3
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 7.3e-67 258.1 189 79.9
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 7.3e-67 258.1 189 79.9
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.2e-66 257.3 195 73.8
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.2e-66 257.3 195 73.8
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 1.2e-66 257.3 188 73.9
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 2.1e-66 256.5 188 75.0
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 2.8e-66 256.1 187 74.3
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 1.4e-65 253.8 188 75.5
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.8e-65 253.4 192 73.4
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 2.3e-65 253.1 193 73.6
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 4.0e-65 252.3 192 78.1
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 5.2e-65 251.9 188 74.5
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 8.9e-65 251.1 189 74.1
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 8.9e-65 251.1 188 74.5
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.5e-64 250.4 190 73.2
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 2.0e-64 250.0 198 73.2
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 4.4e-64 248.8 190 75.3
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 7.5e-64 248.1 191 72.3
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 9.9e-64 247.7 191 69.1
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.9e-63 246.1 195 71.8
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 2.9e-63 246.1 191 72.8
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 3.7e-63 245.7 191 72.3
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 3.7e-63 245.7 195 70.8
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 4.9e-63 245.4 190 73.2
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 4.9e-63 245.4 191 71.7
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.9e-63 245.4 191 71.7
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.9e-63 245.4 191 71.7
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 4.9e-63 245.4 190 68.9
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 4.9e-63 245.4 187 71.1
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 8.3e-63 244.6 189 69.8
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 8.3e-63 244.6 192 72.4
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 8.3e-63 244.6 191 72.3
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 8.3e-63 244.6 191 72.3
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.1e-62 244.2 191 71.2
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 1.1e-62 244.2 192 71.9
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.4e-62 243.8 190 70.0
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.4e-62 243.8 217 64.1
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 1.4e-62 243.8 190 70.0
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.4e-62 243.8 190 72.1
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.4e-62 243.0 192 72.4
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 4.1e-62 242.3 189 69.3
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 4.1e-62 242.3 188 70.2
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 7.1e-62 241.5 192 71.9
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.2e-61 240.7 186 73.1
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 2.7e-61 239.6 188 70.2
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 4.6e-61 238.8 191 68.6
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 6.0e-61 238.4 191 70.7
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 7.8e-61 238.0 229 62.0
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 7.8e-61 238.0 191 71.7
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 7.8e-61 238.0 191 71.7
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.0e-60 237.7 195 68.7
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.0e-60 237.7 192 68.8
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.3e-60 237.3 190 70.0
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.7e-60 236.9 191 70.2
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 2.3e-60 236.5 191 70.2
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 6.6e-60 235.0 190 72.1
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 6.6e-60 235.0 178 71.3
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 6.6e-60 235.0 162 77.8
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 8.6e-60 234.6 199 70.4
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 8.6e-60 234.6 191 69.1
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 8.6e-60 234.6 188 71.8
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 8.6e-60 234.6 190 68.9
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.1e-59 234.2 192 72.4
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.1e-59 234.2 191 66.5
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 1.9e-59 233.4 195 67.2
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 2.5e-59 233.0 164 76.8
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 2.5e-59 233.0 190 67.4
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 3.3e-59 232.6 190 68.9
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 7.3e-59 231.5 189 66.7
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 7.3e-59 231.5 162 75.9
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 1.2e-58 230.7 161 77.0
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.2e-58 230.7 190 66.3
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 2.8e-58 229.6 184 68.5
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 2.8e-58 229.6 191 67.5
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.4e-57 227.3 192 66.7
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 1.4e-57 227.3 186 69.4
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.4e-57 226.5 207 64.7
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 4.0e-57 225.7 183 68.9
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 4.0e-57 225.7 188 66.5
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 6.8e-57 224.9 187 66.3
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 1.5e-56 223.8 161 73.3
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 5.8e-56 221.9 158 73.4
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 5.8e-56 221.9 219 59.4
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 7.6e-56 221.5 175 71.4
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 7.6e-56 221.5 186 66.7
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 7.6e-56 221.5 159 74.2
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 2.9e-55 219.5 187 66.3
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 3.8e-55 219.2 181 70.7
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 8.4e-55 218.0 172 71.5
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 1.4e-54 217.2 143 78.3
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.2e-54 216.1 162 74.1
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 3.2e-54 216.1 168 71.4
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 4.2e-54 215.7 189 63.0
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 4.2e-54 215.7 161 73.3
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 9.2e-54 214.5 126 87.3
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 1.2e-53 214.2 192 64.6
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 2.7e-53 213.0 190 63.7
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 3.5e-53 212.6 158 72.8
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 7.8e-53 211.5 188 64.4
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 7.8e-53 211.5 193 62.2
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 1.0e-52 211.1 128 85.2
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.3e-52 210.7 191 63.4
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 3.9e-52 209.1 125 84.8
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 3.9e-52 209.1 132 79.5
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 6.6e-52 208.4 153 74.5
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 6.6e-52 208.4 126 84.1
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.1e-51 207.6 153 74.5
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-51 207.2 153 74.5
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 1.9e-51 206.8 124 82.3
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 3.3e-51 206.1 166 70.5
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.6e-50 203.8 132 78.8
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 1.3e-47 194.1 194 57.7
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.1e-46 191.0 160 68.1
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.4e-46 190.7 163 62.0
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 5.4e-46 188.7 145 72.4
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 5.4e-46 188.7 191 62.3
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 7.1e-46 188.3 163 62.0
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 9.3e-46 188.0 192 60.9
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 6.0e-45 185.3 152 71.7
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.0e-44 184.5 172 58.7
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 8.7e-44 181.4 157 65.6
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 1.1e-43 181.0 157 65.6
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 7.3e-43 178.3 155 65.2
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.3e-42 177.6 190 57.4
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.7e-39 167.2 129 66.7
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.2e-39 166.8 188 52.1
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 8.4e-39 164.9 124 65.3
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.4e-38 164.1 189 50.8
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 2.4e-38 163.3 97 90.7
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 5.4e-38 162.2 195 50.3
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 3.5e-37 159.5 151 59.6
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 4.6e-37 159.1 142 64.1
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 4.3e-35 152.5 173 53.8
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 2.8e-34 149.8 125 60.0
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 6.2e-34 148.7 174 51.1
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.4e-33 146.7 162 51.9
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 2.0e-32 143.7 126 69.0
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 3.4e-32 142.9 126 69.0
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.5e-32 142.5 177 48.6
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.3e-31 141.0 78 91.0
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.9e-30 137.1 110 62.7
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 4.6e-29 132.5 142 56.3
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 1.6e-26 124.0 143 55.9
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.8e-25 120.6 69 87.0
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 1.2e-24 117.9 126 61.1
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.2e-23 113.6 113 61.9
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.9e-22 110.5 68 82.4
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 7.1e-22 108.6 68 80.9
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 6.9e-17 92.0 64 73.4
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.2e-16 91.3 61 75.4
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 2.6e-16 90.1 63 76.2
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 5.9e-16 89.0 87 54.0
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 5.9e-16 89.0 63 74.6
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 2.5e-14 83.6 47 83.0
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 4.2e-14 82.8 126 37.3
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 6.9e-09 65.5 38 81.6
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 3.4e-08 63.2 37 78.4
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 5.9e-08 62.4 37 78.4
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 3.8e-07 59.7 37 75.7
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 7.2e-06 55.5 31 83.9


User provided reference genes

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