Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 0.0e+00 1332.8 691 100.0
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 0.0e+00 1270.4 695 95.3
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 0.0e+00 1230.3 696 92.1
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 0.0e+00 1224.9 695 91.9
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 0.0e+00 1208.0 695 90.1
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 0.0e+00 1179.1 696 88.1
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 0.0e+00 1179.1 696 88.1
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 0.0e+00 1177.5 696 88.6
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 0.0e+00 1177.5 695 88.5
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 0.0e+00 1176.8 696 87.8
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 0.0e+00 1166.8 697 87.7
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 0.0e+00 1160.6 697 87.2
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 0.0e+00 1104.7 703 83.2
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.7e-281 971.8 702 74.5
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.6e-268 928.7 704 72.0
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 4.2e-226 788.5 713 63.0
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 3.9e-224 781.9 712 62.4
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 2.5e-218 762.7 711 60.5
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 2.7e-217 759.2 713 61.7
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.9e-217 757.7 708 61.9
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 1.3e-216 756.9 714 60.6
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.5e-215 752.7 733 59.5
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 1.7e-214 750.0 716 59.1
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 5.3e-213 745.0 710 60.1
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.3e-213 745.0 708 61.2
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 3.4e-212 742.3 711 59.9
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.3e-211 740.3 712 60.3
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 2.9e-211 739.2 732 58.2
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 3.8e-211 738.8 712 60.5
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 3.8e-211 738.8 713 59.6
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 5.0e-211 738.4 715 59.3
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 2.5e-210 736.1 726 58.8
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 4.2e-210 735.3 703 61.0
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 5.5e-210 734.9 703 60.6
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.4e-210 734.2 712 60.3
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 3.0e-208 729.2 710 59.7
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 1.1e-207 727.2 715 58.5
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.5e-207 726.9 711 58.8
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 2.0e-207 726.5 716 58.9
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 3.3e-207 725.7 696 59.8
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 3.3e-207 725.7 716 57.7
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 7.4e-207 724.5 720 58.1
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 9.7e-207 724.2 700 59.6
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 1.3e-206 723.8 712 59.4
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.3e-206 721.5 718 59.7
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 6.3e-206 721.5 719 59.2
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 5.3e-205 718.4 709 58.3
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 9.1e-205 717.6 715 58.9
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 1.3e-203 713.8 709 58.3
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.5e-202 709.5 713 57.8
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.5e-202 709.5 719 58.1
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.7e-201 705.3 713 58.1
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 8.0e-201 704.5 708 57.8
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 8.8e-200 701.0 702 56.8
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.1e-199 700.7 707 58.7
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 2.6e-199 699.5 723 58.0
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.7e-199 698.4 712 57.4
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 7.4e-199 698.0 736 56.5
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 8.2e-198 694.5 717 57.5
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.1e-197 694.1 707 58.4
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 1.1e-197 694.1 701 57.5
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.4e-197 693.7 708 57.5
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.8e-197 693.3 713 57.6
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 1.8e-197 693.3 714 56.7
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 2.0e-196 689.9 709 57.5
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.0e-196 689.9 715 55.9
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 2.6e-196 689.5 709 56.3
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 4.5e-196 688.7 715 57.2
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.0e-195 687.6 709 57.1
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 6.5e-195 684.9 716 57.3
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 2.5e-194 682.9 713 57.4
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 7.2e-194 681.4 706 55.9
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 7.2e-194 681.4 711 57.5
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 7.2e-194 681.4 711 56.5
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.0e-192 677.6 717 56.9
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.6e-191 672.9 705 55.3
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.7e-190 670.2 720 55.6
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 2.2e-190 669.8 726 56.2
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 1.1e-189 667.5 716 54.3
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 1.4e-189 667.2 729 56.7
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.6e-188 663.7 709 54.9
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 2.7e-188 662.9 703 55.5
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 4.5e-188 662.1 708 54.4
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 1.7e-187 660.2 719 54.7
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 1.7e-187 660.2 712 55.9
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 3.8e-187 659.1 704 54.1
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 8.5e-187 657.9 713 54.1
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 4.2e-186 655.6 697 55.5
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 7.2e-186 654.8 709 54.6
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 9.4e-186 654.4 705 55.0
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 2.7e-185 652.9 713 54.6
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 8.0e-185 651.4 708 54.4
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 1.0e-184 651.0 716 53.8
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 2.3e-184 649.8 716 54.3
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 2.0e-183 646.7 716 54.1
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 5.7e-183 645.2 709 54.0
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 8.3e-182 641.3 723 55.6
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 1.2e-180 637.5 713 53.4
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 2.0e-180 636.7 703 53.3
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 2.8e-177 626.3 703 52.8
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 4.7e-177 625.5 716 51.7
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 3.0e-176 622.9 712 52.5
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 8.9e-176 621.3 717 54.1
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.5e-175 620.5 707 53.6
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 3.4e-175 619.4 680 54.7
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 4.9e-174 615.5 695 52.8
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 7.8e-172 608.2 864 45.6
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 4.3e-170 602.4 731 52.7
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 5.6e-170 602.1 714 51.8
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 3.6e-169 599.4 711 50.9
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 4.7e-169 599.0 700 52.3
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 6.8e-168 595.1 705 50.9
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 2.6e-167 593.2 726 52.6
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 1.1e-165 587.8 634 54.1
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 2.4e-165 586.6 702 50.1
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 3.5e-164 582.8 739 49.1
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 3.3e-162 576.2 711 50.2
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 3.3e-162 576.2 712 49.4
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 8.0e-161 571.6 703 49.2
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 8.9e-160 568.2 704 49.6
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 1.3e-150 537.7 691 50.4
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 3.5e-148 529.6 714 48.0
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 1.3e-142 511.1 727 46.5
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.1e-128 463.4 373 67.6
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 2.0e-127 460.7 743 42.4
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.7e-126 457.6 375 63.7
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.7e-126 457.6 375 63.7
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 9.3e-125 451.8 382 64.1
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 4.0e-120 436.4 695 45.0
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 9.9e-119 431.8 602 45.8
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 1.6e-113 414.5 323 70.0
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 2.3e-107 394.0 327 65.7
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 1.4e-104 384.8 546 48.0
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 9.7e-98 362.1 717 38.1
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 4.8e-97 359.8 749 37.5
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 9.7e-90 335.5 737 37.7
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.7e-89 334.7 485 44.3
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 8.2e-89 332.4 387 51.4
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 1.2e-87 328.6 774 36.2
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 1.4e-83 315.1 394 51.0
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 3.7e-81 307.0 387 49.1
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.0e-75 288.9 621 36.7
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 6.8e-59 233.0 881 29.1
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 7.5e-58 229.6 404 41.1
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 6.6e-54 216.5 542 32.7
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 8.6e-54 216.1 337 44.5
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.3e-51 208.0 152 73.7
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 4.9e-41 173.7 345 38.0
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.0e-38 166.0 221 43.4
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 1.7e-38 165.2 259 42.1
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 2.3e-38 164.9 253 39.5
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.6e-38 163.3 341 38.4
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.1e-32 146.0 159 53.5
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 2.3e-30 138.3 408 29.7
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 6.8e-27 126.7 367 31.3
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 1.2e-26 125.9 163 47.2
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.3e-25 122.5 69 87.0
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 4.9e-25 120.6 69 87.0
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 4.9e-25 120.6 509 26.3
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 9.6e-21 106.3 62 85.5
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.9e-19 100.1 57 87.7
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 7.6e-18 96.7 82 53.7
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 2.9e-17 94.7 50 92.0
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 3.2e-16 91.3 50 88.0
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.5e-13 82.4 157 38.9
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 7.3e-13 80.1 60 65.0
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.1e-11 76.3 91 51.6
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.6e-10 71.6 94 48.9
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 1.7e-09 68.9 423 27.0
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.2e-09 68.6 46 69.6
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 6.4e-09 67.0 87 47.1
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 8.7e-06 56.6 401 22.2


User provided reference genes

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