Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 6.0e-109 397.5 200 100.0
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.9e-78 296.2 171 86.5
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.5e-67 260.0 172 77.3
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 1.6e-64 250.0 174 73.0
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 3.1e-57 225.7 169 69.8
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 2.7e-56 222.6 169 68.6
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-54 216.9 161 68.9
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 1.0e-52 210.7 173 64.2
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 3.4e-51 205.7 156 69.9
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-49 200.7 169 62.7
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 4.5e-48 195.3 173 61.3
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 4.7e-37 158.7 144 56.9
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 6.1e-37 158.3 144 56.2
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 8.9e-36 154.5 139 56.1
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.5e-35 153.7 146 56.8
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 2.6e-35 152.9 136 55.1
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 7.5e-35 151.4 178 48.3
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.3e-34 150.6 136 52.2
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.3e-34 150.6 173 49.7
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 1.3e-34 150.6 162 51.9
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 2.9e-34 149.4 155 52.3
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 3.7e-34 149.1 146 54.8
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 6.4e-34 148.3 188 43.6
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 1.8e-33 146.7 171 46.2
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 3.2e-33 146.0 179 45.3
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 5.4e-33 145.2 180 44.4
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 7.0e-33 144.8 202 42.1
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 7.0e-33 144.8 143 51.7
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 9.2e-33 144.4 189 43.4
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 9.2e-33 144.4 150 53.3
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 1.2e-32 144.1 163 45.4
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 1.6e-32 143.7 184 45.7
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 2.0e-32 143.3 178 47.2
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 3.5e-32 142.5 178 46.1
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 4.6e-32 142.1 188 42.6
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 6.0e-32 141.7 193 44.0
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 7.8e-32 141.4 192 43.8
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 7.8e-32 141.4 172 45.9
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 1.3e-31 140.6 195 41.5
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 3.9e-31 139.0 196 40.8
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 3.9e-31 139.0 170 47.1
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 3.9e-31 139.0 192 42.2
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.0e-31 138.7 144 53.5
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 5.0e-31 138.7 194 42.8
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 5.0e-31 138.7 193 42.0
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 6.6e-31 138.3 197 42.6
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 8.6e-31 137.9 176 44.3
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.1e-30 137.5 188 43.1
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.5e-30 137.1 190 40.0
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 1.5e-30 137.1 193 41.5
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 1.5e-30 137.1 193 40.4
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 1.9e-30 136.7 191 41.4
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.9e-30 136.7 194 42.3
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.5e-30 136.3 139 54.0
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 3.3e-30 136.0 191 41.4
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 3.3e-30 136.0 192 41.1
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 3.3e-30 136.0 194 42.3
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 3.3e-30 136.0 191 41.9
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 4.3e-30 135.6 194 41.2
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 5.6e-30 135.2 196 40.3
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 5.6e-30 135.2 191 38.7
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 9.5e-30 134.4 192 40.6
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 9.5e-30 134.4 193 43.5
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 9.5e-30 134.4 194 39.7
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 1.2e-29 134.0 192 42.2
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.6e-29 133.7 195 40.5
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 1.6e-29 133.7 186 43.5
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 2.8e-29 132.9 165 47.3
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 2.8e-29 132.9 194 42.3
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 3.6e-29 132.5 98 64.3
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 6.2e-29 131.7 194 40.7
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 8.0e-29 131.3 192 40.1
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 1.4e-28 130.6 194 40.2
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 1.8e-28 130.2 99 64.6
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 1.8e-28 130.2 190 40.5
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.8e-28 130.2 195 40.0
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 2.3e-28 129.8 188 42.6
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 3.1e-28 129.4 192 41.7
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 8.9e-28 127.9 202 39.1
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 8.9e-28 127.9 190 40.5
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 1.2e-27 127.5 96 63.5
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.5e-27 127.1 141 49.6
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.5e-27 127.1 193 40.9
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.5e-27 127.1 136 47.8
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.5e-27 127.1 196 39.8
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.0e-27 126.7 97 62.9
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 2.6e-27 126.3 173 41.0
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 2.6e-27 126.3 187 39.0
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 3.4e-27 125.9 140 49.3
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 5.8e-27 125.2 193 39.9
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 5.8e-27 125.2 188 39.4
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 7.5e-27 124.8 165 41.8
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 1.7e-26 123.6 197 39.1
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 3.7e-26 122.5 198 40.9
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 6.4e-26 121.7 181 40.9
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 1.1e-25 120.9 200 38.5
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.1e-25 120.9 191 40.3
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 1.1e-25 120.9 215 35.8
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.1e-25 120.9 192 38.0
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.1e-25 120.9 192 38.0
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 1.1e-25 120.9 98 63.3
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 1.1e-25 120.9 170 45.9
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.9e-25 120.2 192 38.5
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.9e-25 120.2 98 60.2
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.9e-25 120.2 197 38.1
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 2.4e-25 119.8 123 48.0
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 4.1e-25 119.0 231 34.6
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 1.6e-24 117.1 136 45.6
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.7e-24 116.3 195 36.4
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.0e-24 115.2 197 37.1
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 7.8e-24 114.8 183 38.3
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 7.8e-24 114.8 93 58.1
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.3e-23 114.0 97 57.7
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.3e-23 114.0 97 57.7
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 8.6e-23 111.3 153 40.5
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 1.6e-21 107.1 120 46.7
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.2e-21 105.1 113 50.4
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 6.2e-21 105.1 100 52.0
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 6.8e-20 101.7 99 49.5
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 4.4e-19 99.0 93 58.1
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 1.3e-18 97.4 91 50.5
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 4.1e-17 92.4 98 44.9
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.7e-15 87.0 158 37.3
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 3.0e-15 86.3 165 35.8
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 3.9e-15 85.9 156 34.0
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 5.1e-15 85.5 98 46.9
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 6.6e-15 85.1 158 36.1
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 7.3e-14 81.6 73 58.9
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 1.2e-13 80.9 92 46.7
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 8.1e-13 78.2 56 64.3
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 4.0e-12 75.9 136 34.6
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 1.2e-11 74.3 67 58.2
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 1.2e-11 74.3 57 61.4
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 2.2e-10 70.1 159 33.3
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 4.9e-10 68.9 76 44.7
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 1.4e-09 67.4 76 44.7
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 2.4e-09 66.6 68 51.5
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.4e-09 66.6 68 51.5
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 4.1e-09 65.9 76 44.7


User provided reference genes

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