Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 6.1e-113 411.0 231 100.0
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 4.8e-110 401.4 231 97.4
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 3.8e-107 391.7 231 95.7
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 2.5e-106 389.0 232 95.3
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 5.5e-106 387.9 231 93.9
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 9.4e-106 387.1 232 94.4
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 9.4e-106 387.1 232 94.4
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 9.4e-106 387.1 232 94.8
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 1.2e-105 386.7 231 94.4
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 3.0e-104 382.1 232 93.5
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 3.9e-104 381.7 232 94.0
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 3.9e-104 381.7 232 94.0
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 2.6e-103 379.0 230 93.5
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 3.3e-103 378.6 232 93.5
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 4.4e-103 378.3 232 92.7
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 7.4e-103 377.5 232 93.1
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 7.4e-103 377.5 232 93.1
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.3e-102 376.7 233 93.1
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.3e-102 376.7 233 93.1
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 1.8e-101 372.9 232 91.8
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 2.7e-97 359.0 233 90.6
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.2e-95 353.6 231 86.6
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 3.5e-92 342.0 235 83.8
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.7e-91 339.7 231 84.0
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 1.5e-90 336.7 232 86.6
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.9e-90 336.3 231 80.1
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.9e-90 336.3 231 80.1
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 4.2e-90 335.1 231 83.5
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 4.2e-90 335.1 231 81.0
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 5.5e-90 334.7 233 81.1
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 7.2e-90 334.3 235 80.9
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 2.7e-89 332.4 231 81.0
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 1.0e-88 330.5 231 80.1
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 3.0e-88 328.9 231 79.7
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 8.8e-88 327.4 231 82.3
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 8.8e-88 327.4 231 81.0
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.5e-87 326.6 231 77.9
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 3.4e-87 325.5 233 80.3
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 4.4e-87 325.1 231 79.2
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 4.4e-87 325.1 232 81.5
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 4.4e-87 325.1 231 76.6
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 7.5e-87 324.3 231 79.7
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.7e-86 323.2 231 77.5
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 2.2e-86 322.8 232 81.0
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 2.2e-86 322.8 231 78.8
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 2.8e-86 322.4 246 74.0
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 4.8e-86 321.6 231 78.4
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 6.3e-86 321.2 231 80.1
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 6.3e-86 321.2 231 78.4
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.4e-85 320.1 234 79.5
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.4e-85 320.1 231 77.9
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 2.4e-85 319.3 231 78.4
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 4.1e-85 318.5 232 78.4
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 9.1e-85 317.4 233 76.8
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 2.0e-84 316.2 231 75.8
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 2.7e-84 315.8 231 77.9
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 2.7e-84 315.8 231 79.2
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 2.7e-84 315.8 232 78.4
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 1.3e-83 313.5 231 79.2
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 1.7e-83 313.2 231 77.9
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.3e-83 312.8 233 79.4
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.9e-83 312.4 232 79.3
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 6.5e-83 311.2 232 80.2
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 1.1e-82 310.5 231 76.6
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 1.1e-82 310.5 231 77.5
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 2.5e-82 309.3 234 76.1
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.3e-82 308.9 235 78.3
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 4.2e-82 308.5 234 78.6
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.2e-82 308.5 234 78.6
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 4.2e-82 308.5 231 74.0
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 5.5e-82 308.1 231 76.6
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 5.5e-82 308.1 232 77.6
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 7.2e-82 307.8 232 78.4
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 9.5e-82 307.4 231 75.3
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 1.6e-81 306.6 233 75.5
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 1.6e-81 306.6 233 75.5
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.6e-81 306.6 233 75.5
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 2.1e-81 306.2 232 77.6
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.6e-81 305.4 235 77.9
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 3.6e-81 305.4 232 76.7
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 3.6e-81 305.4 235 77.0
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 6.1e-81 304.7 244 74.6
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 6.1e-81 304.7 231 77.5
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 8.0e-81 304.3 232 78.9
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 1.4e-80 303.5 232 77.6
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.3e-80 302.8 231 75.8
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 4.0e-80 302.0 231 75.8
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 6.8e-80 301.2 236 73.3
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 3.4e-79 298.9 231 76.2
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 9.8e-79 297.4 251 67.3
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 4.9e-78 295.0 232 75.9
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 6.3e-78 294.7 231 75.3
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 8.3e-78 294.3 231 69.3
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.1e-77 293.9 231 74.5
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 1.4e-77 293.5 231 75.3
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.8e-77 293.1 231 74.9
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.8e-77 293.1 233 74.7
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 2.4e-77 292.7 235 73.6
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 2.4e-77 292.7 231 75.3
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 4.1e-77 292.0 233 74.2
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 4.1e-77 292.0 232 74.6
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 5.4e-77 291.6 233 68.7
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 3.5e-76 288.9 231 67.1
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 3.5e-76 288.9 233 72.5
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 3.5e-76 288.9 231 73.6
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 4.5e-76 288.5 234 74.8
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 4.5e-76 288.5 234 74.8
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.7e-75 286.6 231 68.0
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.9e-75 285.8 234 68.8
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 6.6e-75 284.6 285 58.6
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.5e-74 283.5 238 72.7
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 2.1e-73 279.6 236 71.6
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 3.6e-73 278.9 231 71.4
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 3.6e-73 278.9 233 72.1
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 8.0e-73 277.7 231 65.8
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 2.3e-72 276.2 231 70.6
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 8.9e-72 274.2 235 68.5
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 2.0e-71 273.1 234 65.8
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 9.8e-71 270.8 227 71.8
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 1.3e-70 270.4 231 67.5
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 2.2e-70 269.6 231 69.7
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.2e-70 269.6 231 64.9
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 3.7e-70 268.9 232 69.0
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.9e-69 266.5 219 75.8
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 3.2e-69 265.8 234 69.7
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.9e-67 258.8 231 68.4
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 5.0e-67 258.5 231 69.3
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 5.0e-67 258.5 232 69.0
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 8.6e-67 257.7 231 66.7
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.5e-66 256.1 231 68.0
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.6e-66 255.0 231 68.0
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.2e-65 253.8 231 67.5
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 8.9e-64 247.7 234 67.9
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 9.8e-63 244.2 271 56.8
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 8.3e-62 241.1 233 64.8
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 5.4e-61 238.4 231 64.9
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 1.0e-59 234.2 231 63.6
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 7.3e-58 228.0 190 74.2
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 4.1e-53 212.2 188 70.7
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 2.1e-52 209.9 237 59.5
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.3e-51 207.2 161 76.4
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.9e-51 205.7 231 59.7
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.5e-50 203.0 187 69.0
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 9.5e-50 201.1 254 50.4
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 1.2e-47 194.1 236 56.4
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 2.9e-46 189.5 121 81.0
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 5.4e-45 185.3 122 77.0
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 1.6e-44 183.7 243 52.7
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 2.7e-44 183.0 156 72.4
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 4.6e-44 182.2 98 98.0
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.0e-44 181.8 121 76.9
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.0e-39 166.8 156 69.9
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.9e-39 164.5 113 75.2
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-38 164.1 113 74.3
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 4.9e-38 162.2 123 73.2
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.4e-37 160.6 113 73.5
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 6.0e-36 155.2 109 80.7
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.1e-34 151.0 97 78.4
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 1.9e-34 150.2 93 81.7
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 1.3e-33 147.5 176 58.5
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 2.6e-31 139.8 98 81.6
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 6.7e-27 125.2 76 77.6
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.5e-26 124.0 82 73.2
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 7.4e-26 121.7 179 52.0
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 9.0e-24 114.8 231 40.3
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 4.9e-22 109.0 97 62.9
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.5e-21 106.7 182 43.4
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 1.2e-20 104.4 78 69.2
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 3.9e-19 99.4 228 37.7
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 4.8e-17 92.4 74 68.9
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 7.6e-15 85.1 44 88.6
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 5.5e-13 79.0 56 67.9
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 9.3e-13 78.2 71 57.7
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 6.7e-11 72.0 123 39.8
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-08 64.7 96 47.9
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.9e-08 62.0 93 46.2


User provided reference genes

Program Settings