Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 6.4e-180 634.0 334 100.0
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 7.8e-170 600.5 338 95.0
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 8.9e-166 587.0 333 93.1
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 6.6e-161 570.9 337 90.5
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 2.9e-156 555.4 337 87.5
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 6.0e-154 547.7 334 88.3
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 6.0e-154 547.7 337 86.6
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 1.3e-153 546.6 340 87.4
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 3.6e-151 538.5 337 85.5
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 5.3e-150 534.6 340 85.0
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 3.7e-143 511.9 340 80.9
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 1.2e-114 417.2 344 65.1
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 1.8e-105 386.7 348 59.8
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 1.8e-105 386.7 341 60.1
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 5.3e-102 375.2 342 58.2
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 2.0e-101 373.2 321 62.6
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 1.7e-100 370.2 296 65.9
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 5.0e-100 368.6 316 61.4
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 8.5e-100 367.9 341 60.4
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 2.5e-99 366.3 359 58.2
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 3.2e-99 365.9 334 62.6
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 3.2e-99 365.9 345 60.0
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 3.2e-99 365.9 353 57.5
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 2.1e-98 363.2 337 59.1
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 4.7e-98 362.1 345 56.8
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 6.1e-98 361.7 347 58.2
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 2.3e-97 359.8 339 58.1
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 1.5e-96 357.1 346 58.1
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 1.5e-96 357.1 336 57.1
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 2.0e-96 356.7 348 58.0
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 2.6e-96 356.3 342 57.0
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 2.6e-96 356.3 335 56.7
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 3.4e-96 355.9 335 57.6
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 2.2e-95 353.2 336 56.2
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 3.7e-95 352.4 300 62.7
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 1.1e-94 350.9 334 57.2
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 1.8e-94 350.1 337 57.9
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 3.1e-94 349.4 348 57.2
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 4.1e-94 349.0 348 56.6
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 5.4e-94 348.6 331 55.0
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 5.4e-94 348.6 351 55.3
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 2.0e-93 346.7 341 55.1
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 2.0e-93 346.7 303 60.1
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 5.9e-93 345.1 337 55.5
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 5.9e-93 345.1 337 55.5
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 1.0e-92 344.4 341 56.6
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.0e-92 344.4 341 54.8
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 2.9e-92 342.8 335 56.4
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 5.0e-92 342.0 320 56.9
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 6.5e-92 341.7 340 55.6
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 8.5e-92 341.3 297 60.6
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 2.5e-91 339.7 341 54.8
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 7.2e-91 338.2 342 55.8
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 9.4e-91 337.8 322 57.5
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 1.2e-90 337.4 348 56.6
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 2.1e-90 336.7 326 59.2
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 1.0e-89 334.3 323 54.8
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 4.0e-89 332.4 340 55.3
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 5.2e-89 332.0 341 54.5
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 7.5e-88 328.2 289 57.4
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 7.5e-88 328.2 350 54.0
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 6.3e-87 325.1 338 53.0
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 1.1e-86 324.3 341 52.5
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 1.4e-86 323.9 346 54.6
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 9.2e-86 321.2 288 60.4
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 2.7e-85 319.7 389 48.1
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 4.5e-85 318.9 289 57.4
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 7.7e-85 318.2 320 53.8
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 1.7e-84 317.0 353 50.1
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 2.9e-84 316.2 288 58.0
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 8.6e-84 314.7 386 48.2
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 3.3e-83 312.8 319 54.2
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 9.5e-83 311.2 330 49.7
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 1.2e-82 310.8 317 54.9
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 3.6e-82 309.3 296 55.7
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 1.4e-81 307.4 339 51.0
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 1.8e-81 307.0 330 50.3
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 3.0e-81 306.2 333 51.7
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 4.9e-79 298.9 321 54.8
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 6.4e-79 298.5 340 49.1
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 3.9e-76 289.3 346 50.6
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 1.9e-75 287.0 335 46.6
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 4.3e-75 285.8 337 48.7
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 1.4e-73 280.8 290 51.4
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 1.7e-71 273.9 295 53.9
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 2.3e-68 263.5 285 47.4
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 2.6e-64 250.0 342 45.0
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 1.2e-58 231.1 336 44.9
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 2.1e-58 230.3 305 44.6
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 2.4e-54 216.9 281 48.4
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 3.9e-52 209.5 201 54.7
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 5.1e-52 209.1 245 44.5
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 3.3e-51 206.5 220 52.3
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 5.6e-51 205.7 296 41.2
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 4.8e-34 149.4 118 66.9
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 8.1e-34 148.7 136 60.3
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 1.3e-31 141.4 95 68.4
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 5.5e-30 136.0 297 30.0
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 2.5e-27 127.1 272 35.3
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 1.2e-24 118.2 290 30.7
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 1.0e-23 115.2 163 48.5
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 2.9e-23 113.6 128 55.5
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 3.8e-23 113.2 111 55.0
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-17 95.1 297 26.3
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 2.8e-10 70.5 133 37.6
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 4.1e-09 66.6 63 54.0


User provided reference genes

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