Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 0.0e+00 1400.6 716 100.0
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 0.0e+00 1325.5 716 95.0
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 0.0e+00 1266.1 716 89.9
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 0.0e+00 1206.4 716 87.0
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 0.0e+00 1179.1 709 86.3
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 0.0e+00 1153.7 717 84.4
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 0.0e+00 1152.1 718 84.5
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 0.0e+00 1151.3 730 83.3
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 0.0e+00 1140.9 690 85.9
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 0.0e+00 1139.0 711 84.1
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 0.0e+00 1136.3 723 83.0
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 0.0e+00 1117.4 626 91.9
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 0.0e+00 1112.8 766 76.9
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 0.0e+00 1106.7 724 78.5
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 8.1e-265 917.1 718 66.4
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 6.8e-264 914.1 697 68.1
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 1.1e-261 906.7 729 65.4
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 3.5e-260 901.7 729 64.5
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 2.5e-258 895.6 705 65.5
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 7.3e-258 894.0 725 64.6
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 6.2e-257 891.0 734 63.9
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 8.1e-257 890.6 693 65.7
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 3.1e-256 888.6 689 68.2
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 9.9e-255 883.6 693 67.0
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.3e-254 883.2 693 65.4
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 1.7e-254 882.9 722 63.9
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 1.1e-253 880.2 728 64.7
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 2.4e-253 879.0 719 64.5
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 1.0e-251 873.6 730 62.1
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 1.7e-251 872.8 733 61.9
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 8.7e-251 870.5 680 64.7
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.2e-247 860.1 711 63.3
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.2e-247 860.1 703 63.6
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 1.4e-245 853.2 677 64.7
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 4.2e-245 851.7 694 64.0
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 5.4e-245 851.3 687 64.0
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 1.3e-243 846.7 718 62.4
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 1.8e-243 846.3 690 63.5
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 2.3e-243 845.9 723 62.7
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 5.1e-243 844.7 720 62.4
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 6.7e-243 844.3 689 63.3
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 4.3e-242 841.6 693 64.5
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 1.3e-241 840.1 723 63.3
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 1.3e-241 840.1 695 62.9
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.6e-241 839.7 697 63.0
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 4.8e-241 838.2 684 63.9
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.1e-240 837.0 697 62.8
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 5.8e-239 831.2 722 60.9
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 2.9e-238 828.9 716 62.4
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 3.2e-237 825.5 698 61.2
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 6.0e-236 821.2 722 61.4
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 2.3e-235 819.3 709 60.2
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 3.3e-234 815.5 728 58.9
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 1.3e-230 803.5 702 60.0
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 8.4e-230 800.8 689 62.0
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 1.0e-227 793.9 698 61.0
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 1.3e-227 793.5 676 60.8
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 8.7e-227 790.8 690 60.1
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 2.2e-222 776.2 699 58.9
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 7.2e-221 771.2 774 55.7
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 2.1e-220 769.6 722 57.8
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 1.0e-219 767.3 692 58.1
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 6.7e-219 764.6 732 57.9
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 1.1e-218 763.8 784 53.7
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 5.7e-218 761.5 686 58.9
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 5.0e-214 748.4 684 59.1
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 5.5e-213 745.0 658 60.5
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.5e-210 736.9 745 55.6
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 8.2e-209 731.1 531 67.4
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 3.5e-207 725.7 569 65.4
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 6.3e-201 704.9 707 53.9
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 6.3e-201 704.9 732 54.5
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 1.4e-200 703.7 573 63.5
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 8.5e-198 694.5 493 70.8
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.1e-197 694.1 691 55.6
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 7.2e-197 691.4 573 62.3
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 6.3e-193 678.3 696 53.6
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 3.5e-191 672.5 741 53.4
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 9.4e-189 664.5 443 74.7
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 4.1e-184 649.0 556 61.5
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 2.0e-183 646.7 712 51.7
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 3.5e-183 646.0 564 59.9
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 1.5e-181 640.6 688 51.9
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 1.2e-180 637.5 494 65.4
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 1.0e-179 634.4 701 53.8
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 1.5e-178 630.6 735 48.3
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.4e-168 597.4 738 46.1
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 4.7e-156 555.8 420 67.9
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 2.6e-154 550.1 704 43.3
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.9e-149 533.9 480 59.0
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 8.9e-147 525.0 490 57.3
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 9.6e-141 505.0 409 63.3
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 3.9e-134 483.0 373 66.0
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 9.6e-133 478.4 347 68.9
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.2e-130 471.5 379 63.3
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.4e-130 469.9 379 63.6
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.9e-128 464.2 379 62.5
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 3.8e-121 439.9 796 38.4
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.0e-118 431.8 359 61.3
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 3.7e-116 423.3 800 35.8
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 4.8e-116 422.9 755 37.0
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.0e-110 405.2 688 38.4
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 2.6e-106 390.6 314 63.4
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 6.1e-95 352.8 733 33.7
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 9.7e-93 345.5 339 54.9
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 3.1e-91 340.5 319 55.8
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 2.0e-90 337.8 311 59.2
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.8e-68 264.2 237 57.4
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.3e-65 255.4 206 64.6
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 2.3e-65 254.6 163 76.1
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.6e-63 247.3 230 56.1
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 4.7e-63 246.9 313 46.3
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 4.7e-63 246.9 220 57.3
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 2.3e-62 244.6 646 31.1
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 6.8e-62 243.0 250 54.8
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 8.9e-62 242.7 174 70.7
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.1e-48 199.1 264 47.3
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 5.6e-48 196.8 176 56.8
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 1.1e-46 192.6 200 54.0
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 1.3e-44 185.7 168 56.0
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 2.1e-42 178.3 171 53.2
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 3.6e-31 141.0 129 57.4
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.3e-25 122.5 141 52.5
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 2.5e-24 118.2 146 49.3
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 4.3e-24 117.5 157 47.8
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 6.2e-23 113.6 139 54.0
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 5.8e-21 107.1 132 50.0
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 1.9e-19 102.1 141 46.1
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 8.1e-15 86.7 67 65.7
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 6.4e-12 77.0 51 68.6
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.9e-11 75.5 76 52.6
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 9.3e-11 73.2 105 44.8
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 1.5e-08 65.9 37 89.2


User provided reference genes

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