Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.3e-121 439.9 237 100.0
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 9.9e-119 430.3 237 97.5
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 3.2e-117 425.2 237 96.2
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 4.6e-116 421.4 237 95.4
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 4.3e-114 414.8 237 92.8
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.8e-112 409.5 237 93.7
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 4.5e-103 378.3 237 86.5
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 4.5e-103 378.3 237 86.5
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 3.8e-102 375.2 237 86.1
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 3.8e-102 375.2 237 86.1
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.5e-95 353.2 210 89.5
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.6e-95 352.4 242 81.0
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.9e-94 349.0 242 79.8
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.2e-92 343.6 246 77.2
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 1.1e-88 330.5 207 83.6
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 2.7e-84 315.8 243 70.8
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 3.6e-84 315.5 242 69.0
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 1.5e-82 310.1 243 70.4
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 2.6e-82 309.3 241 69.3
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 5.7e-82 308.1 239 69.0
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 3.7e-81 305.4 233 70.0
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.4e-80 303.5 244 68.4
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 4.1e-80 302.0 233 70.0
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 4.1e-80 302.0 241 68.9
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 4.1e-80 302.0 232 68.5
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 9.1e-80 300.8 241 68.9
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.2e-79 300.4 244 67.6
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.5e-79 300.1 245 66.9
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.5e-79 300.1 233 66.5
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.6e-79 299.3 205 77.1
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 2.6e-79 299.3 245 67.3
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.5e-79 298.9 225 69.8
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 4.5e-79 298.5 205 77.6
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 4.5e-79 298.5 204 77.5
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 7.7e-79 297.7 245 67.3
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.0e-78 297.4 239 68.2
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.7e-78 296.6 207 74.4
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 2.9e-78 295.8 204 77.0
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 3.8e-78 295.4 204 76.5
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 3.8e-78 295.4 208 73.1
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 8.5e-78 294.3 207 73.4
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 1.1e-77 293.9 211 72.0
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-77 293.9 239 67.4
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.1e-77 293.9 212 73.1
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 1.5e-77 293.5 245 65.7
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.9e-77 293.1 207 75.4
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.9e-77 293.1 214 72.9
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.9e-77 293.1 205 74.6
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.9e-77 293.1 245 66.1
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 3.2e-77 292.4 240 66.2
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 4.2e-77 292.0 230 67.4
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 4.2e-77 292.0 205 74.6
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 5.5e-77 291.6 205 74.6
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 7.2e-77 291.2 208 74.0
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 7.2e-77 291.2 242 65.7
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 9.4e-77 290.8 208 73.1
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.2e-76 290.4 205 74.6
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.2e-76 290.4 204 74.5
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.2e-76 290.4 208 72.6
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.6e-76 290.0 207 74.9
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 2.1e-76 289.7 236 66.5
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 2.7e-76 289.3 248 63.3
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 8.0e-76 287.7 208 71.6
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.4e-75 287.0 244 64.8
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 2.3e-75 286.2 244 64.3
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 3.9e-75 285.4 208 73.1
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 5.2e-75 285.0 205 73.2
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 5.2e-75 285.0 237 66.7
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.2e-75 285.0 237 66.2
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.2e-75 285.0 237 66.2
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 5.2e-75 285.0 209 71.8
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 6.7e-75 284.6 207 72.9
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 6.7e-75 284.6 198 74.2
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 8.8e-75 284.3 241 64.7
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 8.8e-75 284.3 245 65.3
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.1e-74 283.9 244 63.5
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.1e-74 283.9 242 64.9
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.0e-74 283.1 188 78.2
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 2.0e-74 283.1 229 63.8
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.0e-74 283.1 237 66.2
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 2.0e-74 283.1 206 73.3
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 2.6e-74 282.7 206 73.3
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 4.4e-74 282.0 207 72.0
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.4e-74 282.0 237 66.2
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 4.4e-74 282.0 245 63.7
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 9.7e-74 280.8 208 70.7
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.3e-73 280.4 229 66.8
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 1.7e-73 280.0 205 71.7
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 2.2e-73 279.6 198 74.2
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.2e-73 279.6 244 63.9
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 2.2e-73 279.6 242 63.2
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.7e-73 278.9 242 64.5
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 3.7e-73 278.9 225 66.7
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.7e-73 278.9 245 62.9
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 6.3e-73 278.1 207 70.5
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 8.2e-73 277.7 213 69.0
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.4e-72 276.9 208 69.2
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 1.8e-72 276.6 183 79.2
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 2.4e-72 276.2 210 70.5
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 5.3e-72 275.0 209 69.9
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 5.3e-72 275.0 200 72.0
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 7.0e-72 274.6 208 71.6
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 9.1e-72 274.2 205 72.7
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 9.1e-72 274.2 207 69.1
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.2e-71 273.9 197 73.1
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 2.6e-71 272.7 207 69.1
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 2.6e-71 272.7 207 69.1
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 2.6e-71 272.7 207 69.6
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 3.5e-71 272.3 210 68.6
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 3.8e-70 268.9 206 68.4
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 1.1e-69 267.3 201 70.6
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 1.1e-69 267.3 207 67.6
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 1.5e-69 266.9 201 70.1
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.5e-69 266.9 224 62.9
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 3.2e-69 265.8 210 66.7
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 6.1e-68 261.5 246 59.8
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.4e-67 260.4 213 67.1
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 1.8e-67 260.0 213 66.2
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 8.8e-67 257.7 206 68.0
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 3.7e-65 252.3 207 63.3
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 4.8e-65 251.9 159 84.3
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 3.1e-64 249.2 220 60.5
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 9.1e-64 247.7 198 65.7
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 8.5e-62 241.1 198 64.1
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 2.1e-60 236.5 222 56.8
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 8.0e-60 234.6 175 68.6
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 3.4e-50 202.6 218 56.0
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 1.1e-48 197.6 189 57.1
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 2.4e-48 196.4 165 66.1
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 1.2e-47 194.1 225 50.7
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 7.0e-40 168.3 135 67.4
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 3.3e-37 159.5 113 70.8
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 7.3e-37 158.3 174 49.4
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 9.8e-34 147.9 171 46.8
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 4.9e-33 145.6 218 46.3
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 3.0e-30 136.3 104 67.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 6.2e-28 128.6 188 41.0
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 4.9e-25 119.0 109 55.0
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.9e-24 117.1 86 66.3
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.2e-17 93.6 90 63.3
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 1.1e-16 91.3 189 31.7
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 7.1e-16 88.6 84 61.9
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 3.3e-13 79.7 207 30.4
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 5.8e-10 68.9 58 63.8
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.3e-06 57.8 57 57.9


User provided reference genes

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