Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 4.1e-187 659.1 740 100.0
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 6.4e-124 449.1 740 80.8
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.8e-118 431.0 321 88.2
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 9.0e-110 402.1 219 98.6
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 2.9e-108 397.1 222 95.9
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 6.5e-108 396.0 220 95.0
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 1.5e-104 384.8 220 93.6
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 1.5e-104 384.8 214 96.3
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 1.3e-103 381.7 220 93.2
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 1.3e-103 381.7 220 93.2
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 3.4e-101 373.6 364 68.4
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 1.2e-98 365.2 324 79.6
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 3.3e-96 357.1 219 85.8
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 5.7e-96 356.3 215 87.9
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 9.7e-96 355.5 212 87.7
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 9.7e-96 355.5 212 87.7
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 2.2e-95 354.4 212 88.2
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 6.3e-95 352.8 211 86.7
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 8.2e-95 352.4 222 84.2
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 1.1e-94 352.1 210 87.6
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 5.3e-94 349.7 220 83.2
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 1.5e-93 348.2 213 86.4
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 2.0e-93 347.8 213 85.4
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 4.5e-93 346.7 220 83.6
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 7.7e-93 345.9 213 86.4
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 7.7e-93 345.9 213 85.0
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 7.7e-93 345.9 212 84.0
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 7.7e-93 345.9 211 86.3
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 7.7e-93 345.9 213 85.9
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 7.7e-93 345.9 213 83.6
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 1.3e-92 345.1 210 85.2
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 1.7e-92 344.7 219 81.7
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 3.8e-92 343.6 219 82.6
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 6.5e-92 342.8 216 84.3
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 8.5e-92 342.4 213 85.4
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 1.1e-91 342.0 211 84.8
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 1.4e-91 341.7 229 81.2
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 1.4e-91 341.7 212 84.0
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 1.9e-91 341.3 213 82.6
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 2.5e-91 340.9 209 85.2
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 3.2e-91 340.5 213 84.0
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 3.2e-91 340.5 210 85.2
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 4.2e-91 340.1 220 82.3
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 5.5e-91 339.7 219 81.3
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.2e-90 338.6 216 82.9
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 1.2e-90 338.6 207 86.0
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 1.6e-90 338.2 225 80.4
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 3.6e-90 337.0 222 80.6
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 4.7e-90 336.7 216 81.5
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 4.7e-90 336.7 213 84.5
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 4.7e-90 336.7 219 80.4
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 8.0e-90 335.9 216 81.5
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 8.0e-90 335.9 223 81.6
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 5.2e-89 333.2 208 83.7
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 5.2e-89 333.2 208 83.7
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 8.8e-89 332.4 214 84.1
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.1e-88 332.0 217 80.6
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 2.6e-88 330.9 213 81.7
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.6e-88 330.9 210 81.4
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.6e-88 330.9 210 81.4
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 2.6e-88 330.9 214 82.2
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 3.3e-88 330.5 215 80.9
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 3.3e-88 330.5 214 81.3
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.3e-88 330.5 210 81.4
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.3e-88 330.5 210 81.4
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 3.3e-88 330.5 208 82.7
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.7e-88 329.7 210 81.4
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 7.4e-88 329.3 210 83.8
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 9.7e-88 328.9 218 78.4
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 1.3e-87 328.6 213 81.7
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 1.3e-87 328.6 207 82.6
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 2.2e-87 327.8 209 82.8
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 2.8e-87 327.4 221 80.1
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 3.7e-87 327.0 352 69.6
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.8e-87 326.6 210 80.5
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.4e-86 325.1 210 79.5
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 4.1e-86 323.6 209 80.9
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.6e-85 321.6 212 80.2
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 2.0e-85 321.2 209 80.4
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 2.6e-85 320.9 202 83.2
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 1.5e-83 315.1 342 66.4
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 6.1e-82 309.7 195 82.6
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 1.2e-80 305.4 196 81.6
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 1.2e-80 305.4 252 68.3
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.3e-79 302.0 209 76.6
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 1.7e-79 301.6 209 76.6
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 2.8e-79 300.8 202 78.7
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 4.8e-79 300.1 220 71.4
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 2.7e-77 294.3 347 60.2
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 1.3e-76 292.0 216 70.4
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.3e-76 292.0 220 68.6
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 1.3e-76 292.0 190 80.5
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 2.5e-75 287.7 182 81.3
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 2.1e-74 284.6 218 67.9
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 4.7e-74 283.5 190 78.9
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 8.0e-74 282.7 179 82.7
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 2.6e-72 277.7 225 69.8
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 3.8e-68 263.8 209 64.6
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 1.1e-67 262.3 197 69.5
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.3e-67 260.8 190 70.5
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 5.5e-67 260.0 198 71.2
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.6e-66 258.5 200 66.0
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 4.1e-62 243.8 188 71.3
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 4.1e-62 243.8 164 79.3
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 4.3e-59 233.8 179 72.6
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 7.5e-56 223.0 171 72.5
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 1.6e-53 215.3 208 58.2
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.4e-40 171.0 157 58.0
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 1.6e-34 152.1 94 80.9
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 4.9e-31 140.6 115 60.0
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 3.2e-30 137.9 103 76.7
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 3.3e-27 127.9 79 81.0
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 1.3e-26 125.9 196 39.8
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 2.0e-24 118.6 82 79.3
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 5.8e-24 117.1 213 35.7
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 7.6e-24 116.7 75 80.0
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 1.9e-22 112.1 64 89.1
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 3.2e-22 111.3 74 74.3
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 3.0e-20 104.8 74 73.0
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 3.6e-18 97.8 63 76.2
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 1.4e-17 95.9 56 83.9
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.8e-17 95.5 180 37.2
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 1.3e-15 89.4 168 36.3
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 3.8e-15 87.8 142 36.6
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 3.8e-15 87.8 142 36.6
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 4.9e-15 87.4 63 69.8
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.4e-14 85.1 171 36.8
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 5.4e-14 84.0 52 78.8
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 7.1e-14 83.6 107 43.9
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 7.9e-13 80.1 159 36.5
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 1.5e-08 65.9 65 58.5
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 2.0e-08 65.5 35 88.6
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 7.6e-08 63.5 36 83.3
A03p12170 Brassica napus HOM05D022734 ORTHO05D024517 6.5e-07 60.5 39 76.9
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 3.2e-06 58.2 159 26.4


User provided reference genes

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