Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 9.1e-175 617.5 494 100.0
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.9e-151 540.0 502 84.9
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 5.2e-146 521.9 523 83.6
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 3.3e-140 502.7 505 79.8
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 4.9e-136 488.8 510 69.8
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 2.4e-135 486.5 510 69.6
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 3.2e-135 486.1 500 76.8
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 1.2e-134 484.2 510 69.8
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 1.1e-132 477.6 501 66.9
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 2.1e-131 473.4 501 70.1
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 6.0e-126 455.3 500 69.0
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 1.3e-125 454.1 500 68.8
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 3.0e-125 453.0 524 56.7
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 5.1e-125 452.2 500 66.0
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 8.4e-120 434.9 502 69.1
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 2.4e-119 433.3 502 68.7
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 3.8e-112 409.5 530 63.2
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 2.4e-111 406.8 494 61.1
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 4.3e-92 342.8 498 58.2
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 4.3e-92 342.8 498 58.2
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 1.4e-82 311.2 501 48.1
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 5.0e-80 302.8 499 45.5
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 1.1e-79 301.6 500 49.4
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 1.1e-79 301.6 500 51.6
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 3.6e-78 296.6 502 46.8
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 8.0e-78 295.4 500 53.6
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 8.0e-78 295.4 501 44.3
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 3.0e-77 293.5 509 43.6
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 3.9e-77 293.1 500 51.2
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 7.4e-76 288.9 502 47.4
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 7.4e-76 288.9 499 48.9
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 2.8e-75 287.0 513 46.4
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 8.2e-75 285.4 514 46.9
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 1.1e-74 285.0 501 48.3
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 1.1e-74 285.0 495 51.1
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 1.8e-74 284.3 509 44.6
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 4.1e-74 283.1 505 47.5
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 2.6e-73 280.4 495 49.7
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 5.9e-73 279.3 516 46.7
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 5.9e-73 279.3 503 50.9
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 7.7e-73 278.9 503 45.7
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 1.7e-72 277.7 502 48.8
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 2.2e-72 277.3 500 48.0
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 5.0e-72 276.2 496 42.9
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 8.5e-72 275.4 502 45.6
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 1.1e-71 275.0 514 44.0
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 6.1e-70 269.2 496 53.6
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 2.3e-69 267.3 505 44.2
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 2.3e-69 267.3 496 44.4
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 6.7e-69 265.8 497 55.9
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 6.7e-69 265.8 500 45.4
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 8.8e-69 265.4 498 51.4
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 1.2e-68 265.0 538 53.5
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 2.6e-68 263.8 525 46.7
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 2.6e-68 263.8 502 45.0
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 4.4e-68 263.1 517 51.1
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.7e-67 261.2 243 63.4
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 2.8e-67 260.4 510 45.5
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 4.8e-67 259.6 501 43.7
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.8e-66 257.7 517 53.0
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 2.4e-66 257.3 505 50.3
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 2.4e-66 257.3 505 50.3
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 2.4e-66 257.3 585 57.6
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 4.1e-66 256.5 511 42.9
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 5.3e-66 256.1 495 40.2
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 7.0e-66 255.8 498 50.2
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 3.5e-65 253.4 469 40.3
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 5.9e-65 252.7 540 43.7
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 1.7e-64 251.1 539 57.9
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 3.8e-64 250.0 504 51.4
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 3.8e-64 250.0 511 56.9
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 6.5e-64 249.2 497 52.5
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.5e-63 248.1 503 44.1
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 3.2e-63 246.9 525 54.1
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 2.7e-62 243.8 521 53.6
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 8.0e-62 242.3 562 51.8
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 1.4e-61 241.5 506 45.8
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 5.2e-61 239.6 537 47.9
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 6.8e-61 239.2 573 44.3
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 4.4e-60 236.5 581 47.7
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 7.5e-60 235.7 508 46.9
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 9.8e-60 235.3 497 52.1
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.7e-59 233.4 614 44.8
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 4.8e-59 233.0 505 54.7
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 1.1e-58 231.9 622 48.7
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.1e-58 231.9 622 48.7
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.1e-58 231.9 621 44.0
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 2.4e-58 230.7 527 54.8
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 5.9e-57 226.1 555 53.5
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 7.7e-57 225.7 527 58.6
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 7.7e-57 225.7 524 51.3
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 8.6e-56 222.2 515 46.6
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 8.6e-56 222.2 166 74.1
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 1.2e-54 218.4 623 49.9
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 1.8e-53 214.5 494 44.7
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 5.7e-52 209.5 549 52.8
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 4.9e-51 206.5 499 39.5
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 2.4e-50 204.1 602 48.8
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 2.7e-49 200.7 500 37.4
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 3.5e-49 200.3 175 67.4
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 1.0e-48 198.7 173 66.5
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.0e-48 198.7 497 41.2
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 1.7e-48 198.0 625 47.2
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 3.5e-41 173.7 532 50.9
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 2.5e-39 167.5 183 59.0
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 2.6e-36 157.5 180 54.4
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 3.4e-36 157.1 184 51.6
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 5.4e-34 149.8 152 59.2
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 1.6e-33 148.3 167 56.3
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 1.7e-32 144.8 511 38.4
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.1e-31 142.1 467 31.0
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 2.5e-31 141.0 108 75.0
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 9.5e-31 139.0 109 73.4
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.2e-30 138.7 85 82.4
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.6e-30 138.3 396 47.7
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 4.7e-30 136.7 91 78.0
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 8.1e-30 136.0 85 82.4
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 4.3e-23 113.6 130 55.4
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 1.6e-22 111.7 102 58.8
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 6.2e-22 109.8 141 53.9
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 1.1e-21 109.0 145 53.1
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 2.4e-21 107.8 179 46.4
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 2.9e-19 100.9 177 36.7
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 3.8e-19 100.5 403 35.5
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 7.1e-18 96.3 114 49.1
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.1e-17 94.7 63 74.6
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 7.8e-17 92.8 481 32.4
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 3.9e-16 90.5 66 72.7
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 1.9e-15 88.2 180 35.6
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.3e-15 87.4 117 43.6
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 6.2e-14 83.2 108 42.6
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 3.1e-13 80.9 53 77.4
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 6.4e-11 73.2 110 47.3
BcaB05g23360 Brassica carinata HOM05D000598 ORTHO05D006049 4.2e-10 70.5 48 79.2
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 8.7e-08 62.8 71 56.3
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 8.7e-08 62.8 118 38.1
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 3.3e-07 60.8 179 30.2


User provided reference genes

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