Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 1.5e-83 312.8 156 100.0
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 8.7e-47 190.7 159 67.3
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.0e-42 177.2 152 65.1
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.0e-42 177.2 152 65.1
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.0e-42 177.2 152 65.1
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 3.5e-40 168.7 152 62.5
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 7.9e-40 167.5 152 61.2
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 5.1e-39 164.9 152 63.2
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 9.7e-38 160.6 150 60.0
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 1.3e-37 160.2 152 60.5
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 3.7e-37 158.7 153 60.8
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 8.2e-37 157.5 153 60.1
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 1.8e-36 156.4 153 59.5
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 1.8e-36 156.4 153 59.5
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 1.8e-36 156.4 153 59.5
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 1.8e-36 156.4 153 59.5
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 1.8e-36 156.4 153 59.5
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 1.8e-36 156.4 155 58.7
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 2.4e-36 156.0 152 60.5
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 3.1e-36 155.6 152 59.2
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 3.1e-36 155.6 153 59.5
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 3.1e-36 155.6 153 59.5
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 5.3e-36 154.8 159 56.6
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 6.9e-36 154.5 153 58.8
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 9.0e-36 154.1 152 58.6
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 1.2e-35 153.7 149 59.1
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 2.0e-35 152.9 155 56.8
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 3.4e-35 152.1 151 57.6
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 3.4e-35 152.1 149 57.7
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 7.7e-35 151.0 148 57.4
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 7.7e-35 151.0 160 56.2
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 7.7e-35 151.0 149 56.4
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 1.0e-34 150.6 149 55.7
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 2.9e-34 149.1 148 58.8
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 2.9e-34 149.1 149 54.4
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 2.9e-34 149.1 149 55.7
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 2.9e-34 149.1 152 59.2
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 2.9e-34 149.1 152 59.2
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 2.9e-34 149.1 150 58.7
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 3.8e-34 148.7 154 55.2
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 3.8e-34 148.7 149 55.0
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 5.0e-34 148.3 154 55.2
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 5.0e-34 148.3 151 55.6
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 5.0e-34 148.3 145 56.6
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 6.5e-34 147.9 145 57.2
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 6.5e-34 147.9 151 55.6
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 8.5e-34 147.5 148 55.4
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 8.5e-34 147.5 152 56.6
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 8.5e-34 147.5 158 54.4
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 8.5e-34 147.5 145 59.3
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 8.5e-34 147.5 151 56.3
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 1.1e-33 147.1 148 56.8
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 1.1e-33 147.1 155 54.8
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 1.4e-33 146.7 150 56.7
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.9e-33 146.4 148 55.4
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.9e-33 146.4 148 55.4
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 1.9e-33 146.4 154 55.2
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 1.9e-33 146.4 153 53.6
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 3.2e-33 145.6 139 59.7
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 3.2e-33 145.6 156 54.5
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 3.2e-33 145.6 146 56.8
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 4.2e-33 145.2 158 53.8
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 4.2e-33 145.2 149 55.0
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 5.5e-33 144.8 148 55.4
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 7.2e-33 144.4 161 52.8
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 7.2e-33 144.4 151 55.6
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 7.2e-33 144.4 151 55.0
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 9.4e-33 144.1 146 56.2
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 1.2e-32 143.7 153 53.6
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 1.2e-32 143.7 155 54.2
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 1.6e-32 143.3 150 54.0
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 2.1e-32 142.9 146 55.5
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 2.1e-32 142.9 147 55.8
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 2.1e-32 142.9 154 54.5
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 2.1e-32 142.9 149 55.0
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 2.1e-32 142.9 150 53.3
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 2.7e-32 142.5 153 56.2
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 2.7e-32 142.5 153 56.2
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 2.7e-32 142.5 156 53.2
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 4.6e-32 141.7 148 54.1
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 4.6e-32 141.7 148 54.1
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 6.1e-32 141.4 144 53.5
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 6.1e-32 141.4 146 54.1
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 1.0e-31 140.6 151 55.6
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 1.4e-31 140.2 153 52.9
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.3e-31 139.4 148 53.4
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 2.3e-31 139.4 146 53.4
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 2.3e-31 139.4 146 54.1
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 3.9e-31 138.7 152 54.6
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 3.9e-31 138.7 151 53.0
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 5.1e-31 138.3 153 51.6
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 5.1e-31 138.3 147 56.5
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.1e-30 137.1 148 52.7
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.1e-30 137.1 148 52.7
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 1.1e-30 137.1 157 52.9
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 3.3e-30 135.6 149 52.3
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 5.7e-30 134.8 141 56.0
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 5.7e-30 134.8 148 51.4
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 1.4e-28 130.2 149 53.0
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 1.8e-28 129.8 147 51.7
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 3.1e-28 129.0 156 50.6
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 6.9e-28 127.9 147 51.0
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 2.0e-27 126.3 208 40.9
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 2.2e-26 122.9 151 47.0
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 2.9e-26 122.5 147 49.0
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 6.5e-26 121.3 183 43.7
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.9e-25 119.8 142 51.4
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 6.1e-24 114.8 146 45.9
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 3.3e-22 109.0 129 47.3
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 4.8e-21 105.1 81 69.1
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.4e-20 103.6 81 69.1
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 9.1e-20 100.9 81 66.7
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 1.2e-19 100.5 86 64.0
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 5.9e-19 98.2 81 65.4
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 9.4e-17 90.9 83 60.2
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.8e-12 76.6 63 63.5
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.5e-11 72.0 108 48.1
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 6.5e-10 68.2 38 78.9
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 7.2e-09 64.7 84 46.4
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 3.6e-08 62.4 158 29.1
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 1.0e-07 60.8 41 68.3
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.2e-06 57.4 41 61.0
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 3.3e-06 55.8 152 30.9


User provided reference genes

Program Settings