Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 5.5e-159 564.3 297 100.0
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 2.7e-153 545.4 297 97.3
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 1.2e-142 510.0 297 92.3
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 5.8e-132 474.6 297 86.2
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 2.5e-119 432.6 297 80.5
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 3.2e-106 389.0 297 73.1
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 3.0e-104 382.5 304 71.1
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 7.3e-103 377.9 305 70.2
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 3.1e-101 372.5 297 68.4
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 1.5e-100 370.2 229 84.3
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 9.3e-98 360.9 299 69.2
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 7.8e-97 357.8 300 69.0
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 3.3e-79 299.3 301 54.2
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 1.6e-78 297.0 299 53.8
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 1.1e-77 294.3 305 52.5
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.1e-74 284.3 306 52.9
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.9e-74 283.5 305 52.5
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 3.2e-74 282.7 304 51.6
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 1.2e-73 280.8 315 51.4
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 2.7e-73 279.6 301 51.8
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 4.6e-73 278.9 294 53.4
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 4.6e-73 278.9 309 53.7
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 1.3e-72 277.3 306 50.0
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.3e-72 277.3 303 52.1
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 1.8e-72 276.9 299 50.8
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 1.1e-71 274.2 316 50.0
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 1.1e-71 274.2 298 51.0
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 1.9e-71 273.5 309 50.5
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 2.5e-71 273.1 309 51.1
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 4.3e-71 272.3 297 50.8
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 4.8e-70 268.9 298 50.7
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 8.2e-70 268.1 303 51.5
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 1.1e-69 267.7 301 52.5
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.8e-69 266.9 307 48.9
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 2.4e-69 266.5 309 49.8
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 2.4e-69 266.5 311 49.8
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 6.9e-69 265.0 221 61.1
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 2.0e-68 263.5 322 49.7
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 3.4e-68 262.7 292 50.7
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 3.4e-68 262.7 304 51.3
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 5.9e-68 261.9 292 50.7
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 1.0e-67 261.2 294 51.7
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 1.4e-66 257.3 297 50.2
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 9.4e-66 254.6 313 47.3
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 1.6e-65 253.8 293 48.8
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 3.6e-65 252.7 313 46.6
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 1.8e-64 250.4 301 50.5
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 2.3e-64 250.0 306 47.7
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 3.0e-64 249.6 313 46.0
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 3.9e-64 249.2 297 48.5
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 3.3e-63 246.1 309 48.9
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 3.3e-63 246.1 216 57.9
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 7.4e-63 245.0 300 46.3
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 3.7e-62 242.7 293 48.1
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 1.8e-61 240.4 277 52.7
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 1.8e-61 240.4 237 52.3
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 5.3e-61 238.8 304 46.7
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 1.2e-60 237.7 291 46.7
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 3.4e-60 236.1 286 47.6
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 1.7e-59 233.8 230 53.5
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 1.7e-59 233.8 304 45.7
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 2.2e-59 233.4 266 50.0
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 5.0e-59 232.3 230 52.6
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 6.5e-59 231.9 298 47.0
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 6.5e-59 231.9 238 53.4
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 8.5e-59 231.5 298 45.6
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 5.5e-58 228.8 308 44.8
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 9.4e-58 228.0 285 46.7
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 2.1e-57 226.9 302 48.0
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 3.6e-57 226.1 288 46.9
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 4.7e-57 225.7 303 46.9
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 6.1e-57 225.3 293 45.4
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 7.9e-57 224.9 288 46.9
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 1.0e-56 224.6 308 44.8
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 5.1e-56 222.2 287 47.0
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 1.1e-55 221.1 280 46.4
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 2.0e-55 220.3 309 44.3
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 4.4e-55 219.2 289 48.1
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 2.2e-54 216.9 300 46.3
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 6.3e-54 215.3 215 54.0
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 1.4e-53 214.2 246 47.6
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 4.5e-52 209.1 271 45.0
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 5.0e-51 205.7 278 46.0
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 5.0e-51 205.7 284 44.4
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 9.4e-50 201.4 242 49.2
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.0e-48 198.0 291 40.5
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 3.0e-48 196.4 302 42.1
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 3.9e-48 196.1 262 43.9
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 1.1e-47 194.5 237 46.4
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 4.4e-47 192.6 230 52.6
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 9.7e-47 191.4 279 42.3
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.8e-45 187.2 289 40.1
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 9.1e-45 184.9 279 42.7
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 3.8e-43 179.5 281 41.6
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 1.5e-42 177.6 248 44.0
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 1.9e-42 177.2 314 36.6
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 1.6e-41 174.1 219 43.4
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 1.0e-40 171.4 210 47.6
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 2.3e-40 170.2 267 39.7
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 9.1e-37 158.3 231 45.5
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 4.5e-36 156.0 193 48.2
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 1.3e-35 154.5 273 38.8
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 2.9e-35 153.3 184 49.5
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 3.8e-35 152.9 234 41.5
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 2.1e-33 147.1 134 56.0
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 1.5e-31 141.0 293 34.1
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 9.8e-31 138.3 266 37.6
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.4e-29 134.4 137 48.2
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 5.4e-29 132.5 107 57.9
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 5.9e-28 129.0 311 34.7
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 2.3e-27 127.1 240 38.3
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 1.2e-25 121.3 98 59.2
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 6.1e-25 119.0 193 42.0
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 3.0e-24 116.7 188 35.1
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 5.2e-24 115.9 215 33.5
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 2.2e-22 110.5 63 79.4
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 2.2e-22 110.5 63 79.4
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 8.3e-22 108.6 284 28.5
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 5.9e-20 102.4 293 31.7
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 1.1e-18 98.2 262 32.4
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 1.6e-17 94.4 215 29.8
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 2.8e-17 93.6 132 39.4
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 5.2e-16 89.4 112 43.8
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 1.7e-14 84.3 58 62.1
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 1.9e-13 80.9 89 48.3
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 3.1e-08 63.5 140 34.3
BraA03t11621Z Brassica rapa HOM05D005876 ORTHO05D007326 1.5e-07 61.2 80 47.5
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 4.9e-06 56.2 180 26.7


User provided reference genes

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