Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 4.5e-175 617.8 319 100.0
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 4.0e-163 578.2 325 92.9
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 5.9e-159 564.3 318 92.1
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.6e-151 539.7 318 88.4
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 2.0e-151 539.3 321 87.5
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 1.4e-147 526.6 318 85.8
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 2.3e-147 525.8 320 85.6
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 4.0e-147 525.0 315 85.1
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 2.0e-146 522.7 321 85.4
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 2.0e-146 522.7 318 85.5
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 2.0e-146 522.7 321 85.4
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 2.6e-146 522.3 318 85.5
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 6.4e-145 517.7 318 84.9
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 8.3e-145 517.3 318 84.6
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.6e-143 513.1 319 84.0
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.6e-143 513.1 319 84.0
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 2.7e-143 512.3 322 84.2
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 3.3e-141 505.4 321 83.8
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 3.1e-139 498.8 339 79.4
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.6e-132 476.5 318 77.0
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.0e-126 457.2 316 75.9
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.3e-125 451.8 323 73.4
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.1e-124 449.5 323 73.1
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 3.6e-124 448.7 321 72.6
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 4.0e-123 445.3 327 71.9
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.0e-123 445.3 323 72.1
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 8.9e-123 444.1 326 72.1
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 2.2e-121 439.5 321 71.3
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 4.9e-121 438.3 326 71.2
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 1.2e-119 433.7 311 73.6
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 3.0e-118 429.1 317 71.3
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 1.6e-116 423.3 292 74.7
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 8.1e-116 421.0 314 69.4
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 3.4e-114 415.6 319 68.7
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 7.6e-114 414.5 311 69.5
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 9.9e-114 414.1 319 72.1
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 1.7e-113 413.3 319 67.7
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 2.2e-113 412.9 317 68.8
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 4.9e-113 411.8 320 72.2
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 9.3e-112 407.5 318 65.7
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 1.2e-111 407.1 313 68.1
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 1.6e-111 406.8 323 66.6
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 1.6e-111 406.8 316 67.1
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.6e-111 406.8 310 68.4
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 2.7e-111 406.0 309 68.6
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 3.5e-111 405.6 321 66.4
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 3.5e-111 405.6 308 68.5
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 4.6e-111 405.2 319 68.0
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 4.6e-111 405.2 308 68.5
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 6.0e-111 404.8 320 71.2
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 6.0e-111 404.8 323 67.5
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 7.9e-111 404.4 323 67.5
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 2.3e-110 402.9 320 66.2
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 2.3e-110 402.9 293 70.6
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 3.0e-110 402.5 325 65.8
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 6.6e-110 401.4 320 66.9
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 1.1e-109 400.6 323 66.6
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 1.5e-109 400.2 318 66.7
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 1.5e-109 400.2 309 68.6
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.5e-109 400.2 320 67.2
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.5e-109 399.4 297 68.7
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 7.3e-109 397.9 298 68.8
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 9.6e-109 397.5 301 66.8
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.3e-108 397.1 319 65.8
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.6e-108 396.7 320 64.4
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.1e-108 396.4 320 64.4
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.1e-108 396.4 320 64.4
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 4.8e-108 395.2 301 66.8
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 4.8e-108 395.2 326 64.7
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.2e-108 394.8 261 76.2
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 6.2e-108 394.8 313 65.5
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.1e-107 394.0 320 64.1
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 1.8e-107 393.3 320 64.1
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 4.5e-106 388.7 320 63.1
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 5.8e-106 388.3 292 66.4
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 7.6e-106 387.9 306 66.3
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 7.6e-106 387.9 319 65.2
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 7.6e-106 387.9 292 66.8
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 9.9e-106 387.5 313 65.5
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 2.2e-105 386.3 326 64.1
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 8.4e-105 384.4 320 62.8
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 1.4e-104 383.6 306 64.4
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 2.4e-104 382.9 315 64.8
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 4.2e-104 382.1 313 64.9
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 4.2e-104 382.1 322 63.4
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 4.2e-104 382.1 320 63.4
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 7.1e-104 381.3 317 64.7
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 1.6e-103 380.2 319 63.9
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 2.1e-103 379.8 294 64.6
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 3.5e-103 379.0 291 67.7
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 3.5e-103 379.0 313 62.6
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 3.5e-103 379.0 306 65.7
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 1.0e-102 377.5 293 65.5
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.3e-102 377.1 330 62.4
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.3e-102 377.1 319 63.3
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 3.9e-102 375.6 294 63.9
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 3.9e-102 375.6 316 63.3
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 6.7e-102 374.8 316 62.0
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.5e-101 373.6 322 61.5
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 2.5e-101 372.9 322 60.9
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 3.3e-101 372.5 306 65.0
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 9.6e-101 370.9 304 62.2
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 1.3e-100 370.5 301 62.1
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 2.1e-100 369.8 346 59.0
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 2.8e-100 369.4 327 62.4
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 3.7e-100 369.0 289 64.4
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 8.1e-100 367.9 324 60.8
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 8.1e-100 367.9 391 54.5
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 8.1e-100 367.9 321 63.9
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.1e-99 367.5 313 61.3
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 1.4e-99 367.1 288 66.0
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 6.9e-99 364.8 314 62.1
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 6.9e-99 364.8 315 61.3
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 3.4e-98 362.5 310 62.3
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 4.5e-98 362.1 316 60.4
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 3.8e-97 359.0 325 60.3
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 4.9e-97 358.6 320 61.6
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 1.4e-96 357.1 397 50.9
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 3.2e-96 355.9 343 60.3
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.2e-95 354.0 304 62.2
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 2.1e-95 353.2 317 59.6
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 3.9e-94 349.0 313 60.4
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.1e-94 348.6 380 55.5
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 5.7e-93 345.1 263 70.7
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 5.7e-93 345.1 304 63.8
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 1.8e-91 340.1 223 84.3
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 4.5e-90 335.5 294 59.2
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 6.5e-89 331.6 320 58.1
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 4.2e-88 328.9 304 58.6
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 9.3e-88 327.8 323 53.9
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 2.1e-87 326.6 337 54.6
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 4.6e-87 325.5 258 71.7
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 4.6e-87 325.5 301 55.8
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 6.9e-83 311.6 238 73.5
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 7.7e-82 308.1 323 56.7
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 9.4e-80 301.2 286 57.7
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 6.1e-79 298.5 312 53.8
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 2.4e-75 286.6 300 52.3
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 4.1e-75 285.8 298 52.0
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 1.6e-71 273.9 177 84.7
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 6.1e-71 271.9 160 84.4
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 8.8e-70 268.1 330 48.8
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 4.8e-68 262.3 288 50.0
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 5.3e-67 258.8 252 53.6
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.6e-61 240.0 180 69.4
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 2.2e-57 226.9 166 68.7
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 1.5e-53 214.2 315 46.3
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.7e-50 203.4 143 76.9
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 6.5e-49 198.7 139 80.6
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 3.0e-46 189.9 311 39.9
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.3e-41 174.5 179 57.5
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.4e-35 154.5 168 58.3
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.6e-34 151.0 154 59.1
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 1.7e-33 147.5 82 85.4
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 5.8e-29 132.5 295 36.3
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.6e-26 122.9 108 64.8
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 1.0e-25 121.7 99 67.7
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.0e-25 121.7 306 32.7
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.7e-20 104.4 78 61.5
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 7.8e-18 95.5 111 45.0
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.1e-16 91.7 97 54.6
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 1.4e-11 74.7 61 62.3
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 9.6e-08 62.0 38 86.8
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 1.4e-06 58.2 43 65.1
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 5.2e-06 56.2 56 50.0
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 5.2e-06 56.2 56 50.0


User provided reference genes

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