Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 0.0e+00 1850.5 941 100.0
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 0.0e+00 1689.1 939 91.2
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 0.0e+00 1398.6 936 77.8
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 0.0e+00 1381.7 903 77.9
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 0.0e+00 1378.2 957 75.3
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 0.0e+00 1362.1 959 74.8
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 0.0e+00 1357.8 997 72.3
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 0.0e+00 1328.2 904 76.0
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 0.0e+00 1326.6 904 75.7
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 0.0e+00 1219.5 962 67.7
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 0.0e+00 1210.3 783 79.7
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 0.0e+00 1173.3 963 63.2
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 6.4e-270 934.5 970 50.7
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 7.6e-263 911.0 974 50.2
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 7.6e-263 911.0 987 50.5
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 9.9e-263 910.6 1015 48.7
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 4.9e-262 908.3 980 51.0
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 2.7e-260 902.5 974 49.7
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 3.3e-258 895.6 964 49.9
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 3.7e-257 892.1 969 49.2
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 9.0e-256 887.5 967 50.4
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 1.2e-255 887.1 910 51.3
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 1.5e-247 860.1 955 48.3
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 4.5e-247 858.6 1044 46.4
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 2.5e-245 852.8 981 47.2
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 3.2e-245 852.4 968 47.0
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 9.4e-245 850.9 973 47.2
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 1.8e-243 846.7 979 47.1
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 3.0e-243 845.9 944 47.4
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 6.3e-241 838.2 982 46.1
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 2.0e-239 833.2 1005 45.9
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 2.9e-238 829.3 957 46.4
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 1.4e-237 827.0 1009 45.3
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.7e-233 813.5 996 46.8
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 6.3e-233 811.6 952 45.2
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 4.1e-232 808.9 851 50.5
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 1.3e-230 803.9 470 87.2
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 8.5e-230 801.2 947 46.4
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 1.2e-228 797.3 958 47.2
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 6.1e-228 795.0 947 45.9
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 8.8e-227 791.2 938 46.7
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 1.4e-219 767.3 937 45.7
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 3.7e-217 759.2 915 45.0
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 4.5e-215 752.3 976 44.8
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 1.2e-212 744.2 1009 43.2
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 6.3e-209 731.9 884 46.6
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 1.2e-207 727.6 898 44.8
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 1.1e-205 721.1 967 42.8
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 2.2e-201 706.8 1027 40.7
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 7.3e-197 691.8 858 46.2
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 2.0e-194 683.7 764 49.3
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 2.0e-191 673.7 985 41.5
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 1.1e-189 667.9 842 44.7
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 1.1e-189 667.9 953 41.4
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 2.0e-186 657.1 416 80.3
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 3.3e-181 639.8 888 42.0
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 6.2e-180 635.6 958 41.2
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 4.0e-179 632.9 763 46.7
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 3.4e-178 629.8 657 51.6
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 2.7e-175 620.2 801 43.8
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 1.0e-174 618.2 800 44.5
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 1.3e-174 617.8 803 43.7
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 9.6e-173 611.7 766 45.3
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 2.4e-171 607.1 885 40.5
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 6.0e-167 592.4 939 37.8
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 1.5e-162 577.8 834 40.4
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 9.9e-162 575.1 677 47.6
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.2e-146 525.0 803 39.9
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 5.8e-138 496.1 631 44.8
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 1.0e-137 495.4 980 35.5
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 3.2e-136 490.3 652 42.8
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 3.9e-134 483.4 862 36.8
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 2.8e-132 477.2 485 52.4
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 2.5e-120 437.6 767 37.9
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 2.0e-117 427.9 505 48.5
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 6.3e-116 422.9 487 47.8
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 2.2e-105 387.9 444 50.0
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 1.8e-102 378.3 360 54.7
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 1.2e-101 375.6 614 38.6
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 1.2e-98 365.5 413 46.5
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 8.3e-92 342.8 977 29.5
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 3.1e-91 340.9 283 59.0
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 4.2e-88 330.5 809 32.0
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 2.9e-84 317.8 532 38.0
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 2.3e-73 281.6 985 25.6
Nitab4.5_0005447g0020 Nicotiana tabacum HOM05D006439 ORTHO05D008152 8.9e-70 269.6 479 35.9
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 6.0e-66 256.9 246 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 3.9e-65 254.2 894 27.3
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 6.4e-60 236.9 869 26.6
AL4G34520 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 1.4e-59 235.7 467 39.6
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 1.1e-54 219.5 181 59.1
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 5.2e-54 217.2 241 45.2
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.3e-49 202.6 173 58.4
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 8.7e-49 199.9 196 54.1
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 1.6e-47 195.7 203 46.3
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 4.4e-45 187.6 172 52.9
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 2.4e-43 181.8 318 37.7
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 7.1e-43 180.3 221 43.9
Aqoxy2G01351 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 3.0e-33 148.3 177 42.4
AL4G34560 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 5.8e-29 134.0 133 56.4
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 4.6e-26 124.4 132 45.5
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.1e-24 119.8 124 47.6
TAR623G0848 Trochodendron aralioides HOM05D006439 ORTHO05D008152 2.8e-23 115.2 105 48.6
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 1.8e-22 112.5 237 31.6
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 2.4e-22 112.1 131 42.0
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 8.4e-20 103.6 262 31.7
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 1.1e-19 103.2 98 52.0
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 2.7e-18 98.6 159 37.7
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 3.6e-18 98.2 172 40.1
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 3.6e-18 98.2 96 51.0
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 2.3e-17 95.5 77 54.5
AL4G34300 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 2.6e-13 82.0 55 78.2
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 2.9e-12 78.6 103 38.8
CSS0006664 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 2.5e-11 75.5 91 48.4
Lsat_1_v5_gn_0_45201 Lactuca sativa HOM05D000530 ORTHO05D000621 1.4e-09 69.7 295 27.1
Lsat_1_v5_gn_5_188920 Lactuca sativa HOM05D000530 ORTHO05D000621 1.4e-09 69.7 295 27.1
SEGI_31670 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 1.4e-09 69.7 113 34.5
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 5.1e-09 67.8 81 49.4
THA.LOC104817526 Tarenaya hassleriana HOM05D000530 ORTHO05D000621 5.1e-09 67.8 323 26.6
ECA247G2477 Erigeron canadensis HOM05D000530 ORTHO05D000621 1.5e-08 66.2 288 26.0
HanXRQChr10g0283811 Helianthus annuus HOM05D000530 ORTHO05D000621 1.5e-08 66.2 311 27.0
arahy.Tifrunner.gnm1.ann1.X5FAHR Arachis hypogaea HOM05D000530 ORTHO05D000621 3.3e-08 65.1 286 29.0
Atru.chr5.1271 Acer truncatum HOM05D000530 ORTHO05D000621 5.7e-08 64.3 294 27.2
THA.LOC104802204 Tarenaya hassleriana HOM05D000530 ORTHO05D000621 5.7e-08 64.3 284 27.8
arahy.Tifrunner.gnm1.ann1.8IM4PM Arachis hypogaea HOM05D000530 ORTHO05D000621 9.7e-08 63.5 286 28.7
BcaB02g08083 Brassica carinata HOM05D000530 ORTHO05D000621 9.7e-08 63.5 288 27.1
ECA248G2962 Erigeron canadensis HOM05D000530 ORTHO05D000621 9.7e-08 63.5 275 28.0
SGA_v2.0_scaffold1G00422 Striga asiatica HOM05D000530 ORTHO05D000621 2.2e-07 62.4 284 27.1
Migut.D00151 Erythranthe guttata HOM05D000530 ORTHO05D000621 2.8e-07 62.0 308 25.3
Lsat_1_v5_gn_8_54220 Lactuca sativa HOM05D000530 ORTHO05D000621 2.8e-07 62.0 289 26.3
Aa31LG10G16770 Aethionema arabicum HOM05D000530 ORTHO05D000621 3.7e-07 61.6 282 29.4
Aa31LG10G16780 Aethionema arabicum HOM05D000530 ORTHO05D000621 3.7e-07 61.6 282 29.8
ECA232G2349 Erigeron canadensis HOM05D006439 ORTHO05D008321 3.7e-07 61.6 143 34.3
AL5G45760 Arabidopsis lyrata HOM05D000530 ORTHO05D000621 4.8e-07 61.2 280 28.6
HanXRQChr01g0002011 Helianthus annuus HOM05D000530 ORTHO05D000621 4.8e-07 61.2 288 27.4
Nitab4.5_0000824g0070 Nicotiana tabacum HOM05D000530 ORTHO05D000621 6.3e-07 60.8 315 25.4
Sc16g0008180 Simmondsia chinensis HOM05D000530 ORTHO05D000621 8.2e-07 60.5 284 25.7
TAR636G1941 Trochodendron aralioides HOM05D000530 ORTHO05D000621 1.1e-06 60.1 298 27.2
Psat3g024480 Pisum sativum HOM05D000530 ORTHO05D000621 1.4e-06 59.7 298 26.8
AT3G62980 Arabidopsis thaliana HOM05D000530 ORTHO05D000621 1.8e-06 59.3 280 28.6
HanXRQChr10g0283821 Helianthus annuus HOM05D000530 ORTHO05D000621 2.4e-06 58.9 294 27.2
CARHR173270 Cardamine hirsuta HOM05D000530 ORTHO05D000621 3.1e-06 58.5 285 27.4
SalBow3G4587 Salvia bowleyana HOM05D000530 ORTHO05D000621 3.1e-06 58.5 298 25.8
ECA247G3131 Erigeron canadensis HOM05D000530 ORTHO05D000621 4.1e-06 58.2 309 24.3
Lj1g0023385 Lotus japonicus HOM05D006439 ORTHO05D008152 4.1e-06 58.2 74 40.5
Glyma.19G193000 Glycine max HOM05D006439 ORTHO05D046803 5.3e-06 57.8 47 55.3
Lj5g0004781 Lotus japonicus HOM05D000530 ORTHO05D000621 5.3e-06 57.8 295 26.4
Cc01_g20300 Coffea canephora HOM05D000530 ORTHO05D000621 6.9e-06 57.4 292 25.7
Nitab4.5_0003614g0030 Nicotiana tabacum HOM05D000530 ORTHO05D000621 6.9e-06 57.4 315 25.4
Lsat_1_v5_gn_9_4820 Lactuca sativa HOM05D000530 ORTHO05D000621 9.1e-06 57.0 327 24.5
Lj1g0014420 Lotus japonicus HOM05D006439 ORTHO05D046803 9.1e-06 57.0 77 42.9


User provided reference genes

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