Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.2e-223 779.6 411 100.0
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 7.3e-210 733.8 448 88.8
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 7.0e-205 717.2 448 87.3
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.5e-202 709.5 448 85.5
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.5e-202 709.5 448 85.7
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.5e-199 699.5 448 83.9
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 4.9e-182 641.3 448 79.0
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 6.4e-182 641.0 448 78.3
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 6.4e-182 641.0 448 78.3
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 6.4e-182 641.0 448 78.3
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 8.4e-182 640.6 448 79.0
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.6e-180 636.3 448 78.1
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.2e-175 620.2 451 74.7
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.6e-169 599.7 451 74.1
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.4e-168 596.7 451 73.4
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.5e-165 584.7 452 72.3
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.5e-165 584.7 452 72.3
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.6e-164 583.2 452 72.6
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 7.9e-164 580.9 454 71.8
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.5e-162 576.6 448 72.1
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 2.9e-158 562.4 449 70.2
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 3.8e-158 562.0 449 69.9
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.9e-157 559.7 449 70.2
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 3.7e-153 545.4 453 66.0
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 6.3e-153 544.7 458 66.4
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 1.1e-152 543.9 439 68.6
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 2.4e-152 542.7 453 65.3
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 4.1e-152 542.0 455 66.6
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 5.3e-152 541.6 452 65.3
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 6.9e-152 541.2 456 65.8
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 7.7e-151 537.7 455 64.6
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.3e-150 537.0 449 66.1
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 5.0e-150 535.0 455 65.5
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 8.5e-150 534.3 443 66.8
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 8.5e-150 534.3 454 65.4
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.1e-149 533.9 451 66.1
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.9e-149 533.1 457 66.3
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 2.5e-149 532.7 456 66.0
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 7.2e-149 531.2 453 65.6
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.2e-148 530.4 452 65.9
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 2.1e-148 529.6 453 65.6
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.0e-147 527.3 451 65.4
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.8e-147 526.6 453 65.1
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 5.1e-147 525.0 454 65.0
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 5.1e-147 525.0 451 64.5
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 6.7e-147 524.6 453 65.1
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 6.7e-147 524.6 453 64.7
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 8.8e-147 524.2 455 64.4
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 8.8e-147 524.2 456 65.1
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.1e-146 523.9 455 65.3
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 2.5e-146 522.7 458 64.0
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 3.3e-146 522.3 453 64.2
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.3e-146 521.9 451 64.3
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 5.7e-146 521.5 451 64.7
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 5.7e-146 521.5 452 64.6
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 4.8e-145 518.5 457 63.7
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.1e-144 517.3 454 63.7
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.4e-144 516.9 457 63.7
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 4.1e-144 515.4 452 63.7
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 5.3e-144 515.0 454 64.1
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 5.3e-144 515.0 452 63.7
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 5.9e-143 511.5 450 64.2
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 5.9e-143 511.5 459 61.9
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.0e-142 510.8 449 63.0
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 1.0e-142 510.8 433 64.7
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.7e-142 510.0 455 62.9
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.7e-142 510.0 454 61.9
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.7e-142 510.0 451 63.2
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 2.2e-142 509.6 453 63.1
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.9e-142 509.2 433 64.4
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.8e-142 508.8 433 64.2
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 8.5e-142 507.7 451 61.9
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.1e-141 507.3 461 62.3
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 4.2e-141 505.4 461 62.3
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.6e-140 503.4 362 73.8
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 3.0e-139 499.2 451 61.4
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 1.5e-138 496.9 454 61.5
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.5e-138 496.9 455 61.3
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 3.3e-138 495.7 460 60.0
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 5.7e-138 495.0 455 62.0
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 7.4e-138 494.6 450 60.4
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 1.3e-137 493.8 450 62.4
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 2.2e-137 493.0 452 59.5
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 4.8e-137 491.9 451 61.6
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 4.1e-136 488.8 434 62.7
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.5e-135 486.9 359 73.0
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 3.5e-135 485.7 451 59.6
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 4.5e-135 485.3 452 60.2
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 5.9e-135 485.0 380 68.9
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.2e-134 483.0 456 61.2
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.2e-134 483.0 456 61.2
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.9e-134 482.6 427 63.0
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 6.5e-134 481.5 451 58.8
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 5.5e-133 478.4 425 60.9
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.0e-131 474.2 456 58.8
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 5.7e-130 468.4 445 60.9
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 7.7e-127 458.0 456 58.8
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 2.1e-124 449.9 341 67.4
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 6.1e-124 448.4 362 66.9
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.4e-123 447.2 399 61.7
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 9.1e-120 434.5 419 60.4
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.1e-112 409.5 454 53.5
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 4.0e-107 392.5 308 67.5
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 7.5e-106 388.3 307 67.8
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 2.4e-104 383.3 251 78.1
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.6e-103 380.6 311 65.6
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.0e-102 377.9 371 55.5
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.6e-100 370.5 372 53.8
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 2.8e-100 369.8 290 66.9
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 3.6e-100 369.4 425 52.5
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.1e-99 366.3 369 53.9
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 4.0e-99 365.9 376 56.1
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 2.0e-98 363.6 418 51.2
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.3e-97 360.9 278 69.8
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 4.3e-93 345.9 301 62.5
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 4.4e-90 335.9 282 64.2
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.7e-89 332.8 361 53.2
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 6.0e-87 325.5 381 49.9
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.6e-84 317.4 364 50.5
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 1.8e-83 313.9 434 47.0
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 1.5e-82 310.8 361 48.8
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 7.6e-82 308.5 370 49.5
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.7e-81 307.4 336 52.7
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 1.1e-77 294.7 300 55.3
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.9e-77 293.9 369 48.2
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 4.9e-73 279.3 383 43.3
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 7.8e-71 271.9 437 45.8
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 3.2e-64 250.0 421 44.4
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 9.3e-56 221.9 188 68.6
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 9.7e-37 158.7 108 77.8
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.7e-36 156.8 114 66.7
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 5.5e-32 142.9 168 48.8
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.0e-30 138.7 83 75.9
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.2e-28 131.0 113 58.4
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.6e-26 124.0 171 40.9
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 3.3e-21 107.1 73 75.3
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.7e-20 104.8 164 40.9
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 5.7e-13 79.7 75 52.0
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-12 78.6 72 62.5
BolC4t27673H Brassica oleracea HOM05D005300 ORTHO05D006622 8.2e-12 75.9 145 40.0
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.1e-11 73.9 56 66.1
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.3e-09 68.6 185 33.0
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.0e-09 66.6 56 66.1


User provided reference genes

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