Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 7.0e-154 547.4 296 100.0
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 2.8e-147 525.4 270 97.4
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 2.8e-147 525.4 270 97.4
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 1.4e-146 523.1 273 95.6
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 2.7e-142 508.8 273 93.0
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 8.0e-142 507.3 273 93.0
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.2e-140 503.4 273 92.7
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 2.6e-140 502.3 274 92.3
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 2.6e-140 502.3 274 92.3
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 4.8e-139 498.0 274 91.2
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 2.0e-137 492.7 274 91.2
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 1.0e-136 490.3 297 85.5
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 3.1e-130 468.8 273 86.1
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 3.1e-130 468.8 273 85.7
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 9.2e-130 467.2 273 85.3
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 2.0e-129 466.1 273 85.7
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.1e-127 460.3 271 84.9
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 2.5e-127 459.1 273 83.9
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 3.3e-127 458.8 275 84.4
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 3.3e-127 458.8 273 84.6
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 5.6e-127 458.0 273 83.9
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 5.6e-127 458.0 273 83.9
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 7.3e-127 457.6 273 85.0
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 7.3e-127 457.6 273 84.2
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 9.5e-127 457.2 273 82.4
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 9.5e-127 457.2 272 83.5
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.6e-126 455.3 274 83.9
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 3.6e-126 455.3 274 84.3
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 4.7e-126 454.9 273 83.2
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 4.7e-126 454.9 274 83.9
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 4.7e-126 454.9 273 83.5
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 6.1e-126 454.5 273 82.8
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 6.1e-126 454.5 273 82.8
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 6.1e-126 454.5 273 83.2
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 8.0e-126 454.1 273 83.5
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.0e-125 453.8 273 83.9
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 1.0e-125 453.8 273 84.2
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.3e-125 452.6 274 83.9
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.0e-125 452.2 273 83.5
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 2.0e-124 449.5 273 83.2
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 2.6e-124 449.1 274 82.5
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 4.4e-124 448.4 273 82.8
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 4.4e-124 448.4 273 82.8
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 4.4e-124 448.4 273 83.2
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 5.7e-124 448.0 275 82.2
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 5.7e-124 448.0 273 80.6
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 3.7e-123 445.3 273 81.7
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 4.9e-123 444.9 272 83.1
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 4.9e-123 444.9 273 80.2
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 6.4e-123 444.5 273 80.6
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 8.3e-123 444.1 273 81.0
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 1.4e-122 443.4 273 81.0
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 1.8e-122 443.0 273 80.6
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 3.2e-122 442.2 273 81.7
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 9.2e-122 440.7 300 76.7
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.6e-121 439.9 276 80.4
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 4.6e-121 438.3 274 79.9
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.8e-121 437.6 273 80.2
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 1.3e-120 436.8 274 80.3
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.7e-120 436.4 273 79.1
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 3.0e-120 435.6 272 78.3
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 3.9e-120 435.3 273 80.6
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 6.6e-120 434.5 273 79.9
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 6.6e-120 434.5 274 79.2
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 8.6e-120 434.1 305 74.4
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 1.5e-119 433.3 268 81.0
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 3.3e-119 432.2 273 80.6
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 5.6e-119 431.4 273 80.2
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 7.3e-119 431.0 272 77.9
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 1.6e-118 429.9 273 78.0
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 2.1e-118 429.5 274 78.5
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 1.8e-117 426.4 272 77.6
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 1.8e-117 426.4 275 77.8
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.2e-116 423.7 289 75.1
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 2.0e-116 422.9 277 78.0
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 2.0e-116 422.9 277 78.0
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 2.0e-116 422.9 273 76.2
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 4.4e-116 421.8 271 78.2
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 5.8e-116 421.4 273 79.1
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.8e-116 421.4 279 78.9
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 1.7e-115 419.9 282 76.6
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 2.2e-115 419.5 273 78.0
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 3.7e-115 418.7 271 77.5
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 4.9e-115 418.3 316 69.3
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 8.3e-115 417.5 274 76.3
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 1.1e-114 417.2 292 74.3
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 1.1e-114 417.2 310 70.0
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 7.0e-114 414.5 296 74.0
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 9.2e-114 414.1 282 77.7
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 1.6e-113 413.3 309 70.9
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 4.6e-113 411.8 275 75.6
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 3.0e-112 409.1 282 75.5
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 5.0e-112 408.3 273 75.8
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 6.6e-112 407.9 276 73.9
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 1.1e-111 407.1 275 74.2
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 1.9e-111 406.4 276 73.6
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 2.5e-111 406.0 276 73.9
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 4.3e-111 405.2 313 69.6
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 1.2e-110 403.7 273 72.9
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.1e-109 400.6 264 72.3
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.1e-109 400.6 307 68.7
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 8.9e-109 397.5 296 70.3
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 5.8e-108 394.8 273 74.7
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.7e-107 392.1 273 70.7
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 2.1e-105 386.3 244 79.1
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 1.1e-103 380.6 280 72.1
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 4.0e-101 372.1 249 85.1
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 2.6e-100 369.4 211 90.0
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 4.9e-99 365.2 233 80.3
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.1e-98 362.1 264 66.7
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 3.6e-94 349.0 224 78.6
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 3.1e-93 345.9 254 69.3
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.2e-92 344.0 275 68.0
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 4.2e-90 335.5 272 65.8
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 6.0e-89 331.6 272 64.7
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 6.0e-89 331.6 272 64.7
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.7e-88 330.1 286 62.2
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 2.3e-88 329.7 281 62.3
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.9e-87 326.6 278 61.9
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 6.2e-86 321.6 205 78.0
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 2.0e-84 316.6 268 62.3
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 5.8e-84 315.1 295 58.3
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.7e-83 313.5 239 66.9
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 5.1e-80 302.0 246 62.6
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 9.9e-76 287.7 263 55.9
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.2e-75 286.6 202 68.8
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 8.4e-75 284.6 181 80.1
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 3.5e-73 279.3 176 79.5
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 6.7e-72 275.0 190 73.2
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 7.6e-68 261.5 180 72.2
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 3.7e-62 242.7 190 65.8
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 2.4e-61 240.0 246 58.1
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.1e-55 221.1 147 76.9
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 4.5e-44 182.6 104 83.7
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 7.7e-44 181.8 96 90.6
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 2.2e-43 180.3 116 77.6
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 3.2e-42 176.4 96 86.5
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 5.2e-40 169.1 260 39.6
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 1.4e-37 161.0 104 76.0
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 1.6e-36 157.5 122 69.7
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 2.0e-36 157.1 95 77.9
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 1.9e-34 150.6 101 72.3
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 2.7e-33 146.7 264 34.8
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 6.1e-33 145.6 118 72.0
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 1.0e-32 144.8 105 78.1
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 1.8e-32 144.1 186 49.5
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 3.0e-32 143.3 118 70.3
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 3.0e-32 143.3 118 70.3
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 4.0e-32 142.9 118 71.2
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 4.0e-32 142.9 78 87.2
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 5.2e-32 142.5 77 87.0
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 1.5e-31 141.0 118 70.3
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 4.4e-31 139.4 118 70.3
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 1.1e-29 134.8 118 68.6
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 2.7e-28 130.2 244 34.0
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 5.9e-28 129.0 83 77.1
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.7e-27 127.5 257 32.7
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 6.5e-27 125.6 65 90.8
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 5.5e-26 122.5 214 38.8
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 2.1e-25 120.6 155 46.5
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 1.4e-24 117.9 155 47.1
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 3.0e-24 116.7 87 73.6
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 3.4e-23 113.2 83 75.9
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.8e-16 88.6 45 95.6
TWI34G1190 Tripterygium wilfordii HOM05D004147 ORTHO05D414039 3.1e-13 80.1 243 31.7
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 1.6e-12 77.8 43 86.0
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 4.5e-12 76.3 102 44.1


User provided reference genes

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