Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.4e-223 779.2 380 100.0
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 4.2e-204 714.5 358 97.5
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 2.2e-200 702.2 358 95.8
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.1e-199 699.9 358 95.3
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 7.0e-199 697.2 358 95.0
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 2.6e-193 678.7 361 92.8
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 5.7e-193 677.6 361 92.8
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 5.7e-193 677.6 361 92.8
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 5.7e-193 677.6 361 92.8
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 5.7e-193 677.6 361 92.8
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 5.7e-193 677.6 361 92.8
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 9.8e-193 676.8 361 92.8
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 2.2e-192 675.6 361 92.0
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 2.2e-192 675.6 361 92.0
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 1.1e-191 673.3 361 92.2
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 1.4e-191 672.9 361 92.2
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 2.9e-189 665.2 362 90.9
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 2.8e-179 632.1 366 86.6
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 1.3e-176 623.2 391 81.6
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 4.3e-172 608.2 361 80.6
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 3.4e-169 598.6 361 78.4
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 3.4e-169 598.6 361 79.2
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 9.8e-169 597.0 361 79.5
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 1.3e-168 596.7 361 79.5
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 3.7e-168 595.1 361 78.4
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 3.7e-168 595.1 361 79.8
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 6.4e-168 594.3 336 88.1
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 8.3e-168 594.0 361 79.5
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 1.2e-166 590.1 347 87.6
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 3.5e-166 588.6 361 78.4
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 1.0e-165 587.0 358 77.9
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 8.6e-165 583.9 361 75.9
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 1.1e-164 583.6 357 84.9
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 1.1e-164 583.6 361 77.0
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.9e-164 582.8 308 94.2
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 2.5e-164 582.4 361 77.3
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 3.3e-164 582.0 361 76.7
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 3.3e-164 582.0 361 77.6
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 7.3e-164 580.9 360 76.4
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 1.2e-163 580.1 360 76.7
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 2.8e-163 578.9 363 77.1
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 6.2e-163 577.8 361 77.6
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 8.1e-163 577.4 360 75.0
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 1.8e-162 576.2 359 76.9
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 5.2e-162 574.7 364 75.8
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 1.2e-161 573.5 361 77.0
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 1.5e-161 573.2 343 79.3
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 4.4e-161 571.6 361 76.7
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 7.5e-161 570.9 369 75.3
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.3e-160 570.1 361 76.5
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 1.7e-160 569.7 360 75.8
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 1.1e-159 567.0 360 76.7
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 2.1e-158 562.8 397 69.5
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 2.7e-158 562.4 362 75.7
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 2.7e-158 562.4 361 78.1
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 7.8e-158 560.8 363 73.6
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 1.0e-157 560.5 360 73.9
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 6.6e-157 557.8 363 73.3
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 1.1e-156 557.0 360 75.0
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 1.9e-156 556.2 361 73.4
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 5.6e-156 554.7 363 74.9
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 2.1e-155 552.7 361 73.7
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 1.1e-154 550.4 359 74.4
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 2.0e-153 546.2 361 72.3
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 2.6e-153 545.8 354 80.2
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 5.8e-153 544.7 371 72.2
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 6.4e-152 541.2 370 72.2
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 6.4e-152 541.2 361 70.6
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 1.1e-151 540.4 358 73.2
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 1.9e-151 539.7 379 71.5
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 1.9e-151 539.7 367 70.0
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 7.8e-150 534.3 337 76.6
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 3.9e-149 531.9 364 72.0
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 8.7e-149 530.8 359 71.0
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 3.3e-148 528.9 358 70.9
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 1.1e-146 523.9 322 78.3
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 5.8e-145 518.1 361 69.8
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 5.8e-145 518.1 282 84.8
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 7.6e-145 517.7 337 74.8
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 1.4e-143 513.5 361 70.4
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 6.6e-141 504.6 361 68.7
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 8.7e-141 504.2 360 70.0
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 1.1e-140 503.8 369 67.2
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 2.5e-140 502.7 308 77.9
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 9.6e-140 500.7 364 69.0
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 5.3e-138 495.0 360 67.8
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 1.7e-136 490.0 361 66.8
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 6.4e-136 488.0 361 67.9
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 6.4e-136 488.0 361 66.8
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 1.9e-135 486.5 360 66.9
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 7.1e-135 484.6 360 66.9
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 1.6e-134 483.4 254 87.8
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 6.0e-134 481.5 361 66.5
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 3.0e-133 479.2 360 66.1
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 1.5e-132 476.9 361 66.5
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 4.3e-132 475.3 361 66.2
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 6.2e-131 471.5 361 66.5
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 1.1e-130 470.7 361 64.3
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 3.1e-130 469.2 361 65.7
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 4.0e-130 468.8 358 64.8
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 4.0e-130 468.8 361 60.9
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 9.0e-130 467.6 361 65.9
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 2.0e-129 466.5 258 83.7
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 9.9e-129 464.2 361 65.1
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 3.2e-127 459.1 361 64.5
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 1.6e-126 456.8 361 64.0
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 6.0e-126 454.9 361 64.5
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 6.0e-126 454.9 361 64.5
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 3.9e-125 452.2 337 69.1
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 3.7e-123 445.7 363 61.2
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 7.6e-121 438.0 361 62.0
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 7.6e-121 438.0 254 77.6
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 2.1e-118 429.9 282 72.3
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 6.0e-118 428.3 370 56.2
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.9e-116 423.3 357 65.0
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 1.9e-116 423.3 361 60.7
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 2.6e-113 412.9 370 54.3
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.2e-112 409.8 364 54.9
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 1.5e-108 397.1 361 59.6
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.5e-108 396.4 364 54.4
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.3e-104 384.0 305 65.2
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 2.5e-103 379.8 224 78.1
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 2.6e-92 343.2 318 56.3
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.2e-80 303.5 147 96.6
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.7e-78 296.6 144 95.8
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 2.3e-77 293.5 406 40.4
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 4.4e-68 262.7 272 51.8
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 7.5e-68 261.9 210 63.3
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.3e-61 240.4 202 61.4
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 4.0e-61 239.6 359 39.3
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 1.1e-55 221.5 201 62.2
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 1.1e-53 214.9 135 74.1
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 4.1e-50 203.0 147 69.4
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 1.2e-41 174.9 134 67.2
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 6.0e-41 172.6 113 69.0
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 1.7e-40 171.0 286 33.6
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 3.6e-38 163.3 140 57.9
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 8.4e-35 152.1 92 72.8
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 1.8e-29 134.4 282 29.8
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 2.1e-25 120.9 146 47.3
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 1.5e-23 114.8 57 87.7
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 6.2e-22 109.4 59 83.1
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 3.1e-21 107.1 66 74.2
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.5e-20 104.8 53 92.5
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 6.2e-14 82.8 57 73.7
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 8.1e-14 82.4 78 53.8
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 4.5e-12 76.6 48 77.1
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 7.4e-07 59.3 157 30.6
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 1.3e-06 58.5 37 67.6


User provided reference genes

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