Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G30424 Arabidopsis thaliana HOM05D002680 ORTHO05D001151 8.1e-24 112.8 55 100.0
AL4G25300 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 3.3e-17 90.9 54 83.3
CARHR123870 Cardamine hirsuta HOM05D002680 ORTHO05D001151 1.6e-16 88.6 54 79.6
Thhalv10017480m.g Eutrema salsugineum HOM05D002680 ORTHO05D001151 4.8e-16 87.0 54 77.8
AL4G25310 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 9.0e-15 82.8 54 77.8
AT2G30432 Arabidopsis thaliana HOM05D002680 ORTHO05D001151 2.6e-14 81.3 54 75.9
Carub.0004s1158 Capsella rubella HOM05D002680 ORTHO05D001151 4.5e-14 80.5 54 70.4
A10p10710 Brassica napus HOM05D002680 ORTHO05D001151 5.8e-14 80.1 54 74.1
BraA10t43152Z Brassica rapa HOM05D002680 ORTHO05D001151 5.8e-14 80.1 54 74.1
Carub.0004s1159 Capsella rubella HOM05D002680 ORTHO05D001151 5.8e-14 80.1 54 74.1
C09p42990 Brassica napus HOM05D002680 ORTHO05D001151 7.6e-14 79.7 54 74.1
C03p20080 Brassica napus HOM05D002680 ORTHO05D001151 1.0e-13 79.3 54 70.4
BolC3t14385H Brassica oleracea HOM05D002680 ORTHO05D001151 1.0e-13 79.3 54 70.4
A03p17020 Brassica napus HOM05D002680 ORTHO05D001151 1.3e-13 79.0 54 70.4
A09p13820 Brassica napus HOM05D000162 ORTHO05D000090 3.8e-13 77.4 54 68.5
AL4G25290 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 5.0e-13 77.0 56 69.6
Sp6g15380 Schrenkiella parvula HOM05D002680 ORTHO05D001151 5.0e-13 77.0 54 72.2
AL136U10030 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 6.5e-13 76.6 56 69.6
AT5G53200 Arabidopsis thaliana HOM05D002680 ORTHO05D001151 8.4e-13 76.3 54 70.4
AL8G27860 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 1.4e-12 75.5 54 70.4
BcaB01g04232 Brassica carinata HOM05D002680 ORTHO05D001151 1.9e-12 75.1 54 70.4
A03p15300 Brassica napus HOM05D002680 ORTHO05D001151 1.9e-12 75.1 54 70.4
BolC3t14195H Brassica oleracea HOM05D002680 ORTHO05D001151 1.9e-12 75.1 54 70.4
BraA03t10823Z Brassica rapa HOM05D002680 ORTHO05D001151 1.9e-12 75.1 54 70.4
BcaC01g06229 Brassica carinata HOM05D002680 ORTHO05D001151 5.5e-12 73.6 54 68.5
C03p17900 Brassica napus HOM05D002680 ORTHO05D001151 5.5e-12 73.6 54 68.5
Carub.0004s1160 Capsella rubella HOM05D002680 ORTHO05D001151 5.5e-12 73.6 56 66.1
Carub.0008s1340 Capsella rubella HOM05D002680 ORTHO05D001151 5.5e-12 73.6 54 70.4
BraA02t06184Z Brassica rapa HOM05D002680 ORTHO05D001151 7.1e-12 73.2 54 66.7
BcaC03g14444 Brassica carinata HOM05D002680 ORTHO05D001151 9.3e-12 72.8 54 66.7
C02p18580 Brassica napus HOM05D002680 ORTHO05D001151 9.3e-12 72.8 54 66.7
BolC2t08000H Brassica oleracea HOM05D002680 ORTHO05D001151 9.3e-12 72.8 54 66.7
THA.LOC104811933 Tarenaya hassleriana HOM05D002680 ORTHO05D001151 9.3e-12 72.8 54 68.5
THA.LOC104825134 Tarenaya hassleriana HOM05D002680 ORTHO05D001151 6.1e-11 70.1 54 64.8
AT2G30420 Arabidopsis thaliana HOM05D002680 ORTHO05D001151 7.9e-11 69.7 58 65.5
TAR629G1715 Trochodendron aralioides HOM05D002680 ORTHO05D001151 7.9e-11 69.7 44 72.7
Cpa.g.sc3.55 Carica papaya HOM05D002680 ORTHO05D001151 2.3e-10 68.2 54 63.0
Potri.015G022000 Populus trichocarpa HOM05D002680 ORTHO05D001151 3.9e-10 67.4 54 59.3
TWI14G1015 Tripterygium wilfordii HOM05D002680 ORTHO05D001151 3.9e-10 67.4 44 70.5
Thhalv10015741m.g Eutrema salsugineum HOM05D002680 ORTHO05D001151 5.1e-10 67.0 54 63.0
Nn3g19058 Nelumbo nucifera HOM05D002680 ORTHO05D001151 5.1e-10 67.0 44 68.2
THA.LOC104800287 Tarenaya hassleriana HOM05D002680 ORTHO05D001151 5.1e-10 67.0 54 63.0
Nn1g01828 Nelumbo nucifera HOM05D002680 ORTHO05D001151 6.7e-10 66.6 44 68.2
Thecc.03G193400 Theobroma cacao HOM05D002680 ORTHO05D001151 2.5e-09 64.7 44 65.9
Ciclev10006315m.g Citrus clementina HOM05D002680 ORTHO05D001151 3.3e-09 64.3 54 57.4
Aa31LG3G9280 Aethionema arabicum HOM05D002680 ORTHO05D001151 4.3e-09 63.9 54 57.4
CiPaw.02G039400 Carya illinoinensis HOM05D002680 ORTHO05D001151 4.3e-09 63.9 44 65.9
CDE02G2614 Ceratophyllum demersum HOM05D002680 ORTHO05D001151 4.3e-09 63.9 44 65.9
TWI15G1123 Tripterygium wilfordii HOM05D002680 ORTHO05D001151 4.3e-09 63.9 44 65.9
Aqoxy5G04173 Aquilegia oxysepala HOM05D002680 ORTHO05D001151 7.4e-09 63.2 44 63.6
Manes.06G157500 Manihot esculenta HOM05D002680 ORTHO05D001151 7.4e-09 63.2 42 61.9
COL.COLO4_06311 Corchorus olitorius HOM05D002680 ORTHO05D001151 9.7e-09 62.8 45 66.7
Manes.05G024900 Manihot esculenta HOM05D002680 ORTHO05D001151 9.7e-09 62.8 44 63.6
Cfa022931 Carpinus fangiana HOM05D002680 ORTHO05D001151 1.3e-08 62.4 44 63.6
Sabra15G0016400 Salix brachista HOM05D002680 ORTHO05D001151 1.3e-08 62.4 44 61.4
TWI60G1384 Tripterygium wilfordii HOM05D002680 ORTHO05D001151 1.3e-08 62.4 48 56.2
Actinidia27327 Actinidia chinensis HOM05D002680 ORTHO05D001151 1.6e-08 62.0 44 65.9
CDE10G0523 Ceratophyllum demersum HOM05D002680 ORTHO05D001151 1.6e-08 62.0 54 55.6
Duzib138G1059 Durio zibethinus HOM05D002680 ORTHO05D001151 1.6e-08 62.0 44 63.6
QL04p056804 Quercus lobata HOM05D002680 ORTHO05D001151 1.6e-08 62.0 44 63.6
Sabra14G0070700 Salix brachista HOM05D002680 ORTHO05D001151 1.6e-08 62.0 33 78.8
Thecc.01G345200 Theobroma cacao HOM05D002680 ORTHO05D001151 1.6e-08 62.0 44 63.6
Duzib133G0158 Durio zibethinus HOM05D002680 ORTHO05D001151 2.2e-08 61.6 42 66.7
Actinidia22726 Actinidia chinensis HOM05D002680 ORTHO05D001151 2.8e-08 61.2 44 65.9
Atru.chr1.254 Acer truncatum HOM05D002680 ORTHO05D001151 3.7e-08 60.8 54 51.9
BcaB08g35682 Brassica carinata HOM05D002680 ORTHO05D001151 3.7e-08 60.8 30 86.7
BolC9t57168H Brassica oleracea HOM05D002680 ORTHO05D001151 3.7e-08 60.8 30 86.7
Eucgr.D02360 Eucalyptus grandis HOM05D002680 ORTHO05D001151 3.7e-08 60.8 44 63.6
Thecc.03G295000 Theobroma cacao HOM05D002680 ORTHO05D001151 3.7e-08 60.8 44 59.1
CiPaw.11G122900 Carya illinoinensis HOM05D002680 ORTHO05D001151 4.8e-08 60.5 46 63.0
Prupe.2G185200 Prunus persica HOM05D002680 ORTHO05D001151 4.8e-08 60.5 44 63.6
Atru.chr5.641 Acer truncatum HOM05D002680 ORTHO05D001151 6.3e-08 60.1 44 63.6
Gohir.A11G096200 Gossypium hirsutum HOM05D002680 ORTHO05D001151 6.3e-08 60.1 44 63.6
Potri.014G096300 Populus trichocarpa HOM05D002680 ORTHO05D001151 6.3e-08 60.1 45 64.4
Sed0019152 Sechium edule HOM05D002680 ORTHO05D001151 6.3e-08 60.1 44 59.1
vmacro13176 Vaccinium macrocarpon HOM05D002680 ORTHO05D001151 6.3e-08 60.1 48 60.4
CDE08G1645 Ceratophyllum demersum HOM05D000257 ORTHO05D003333 8.2e-08 59.7 44 61.4
Duzib084G1355 Durio zibethinus HOM05D002680 ORTHO05D001151 8.2e-08 59.7 40 67.5
PGR031G2198 Punica granatum HOM05D002680 ORTHO05D001151 8.2e-08 59.7 45 64.4
PGR042G1737 Punica granatum HOM05D002680 ORTHO05D001151 8.2e-08 59.7 44 61.4
Sabra12G0020800 Salix brachista HOM05D002680 ORTHO05D001151 8.2e-08 59.7 39 61.5
ClCG01G000590 Citrullus lanatus HOM05D002680 ORTHO05D001151 1.1e-07 59.3 44 59.1
MELO3C034013.2 Cucumis melo HOM05D002680 ORTHO05D001151 1.1e-07 59.3 44 59.1
Gohir.A07G138700 Gossypium hirsutum HOM05D002680 ORTHO05D001151 1.1e-07 59.3 44 61.4
Gohir.D07G143800 Gossypium hirsutum HOM05D002680 ORTHO05D001151 1.1e-07 59.3 44 61.4
Gorai.001G155700 Gossypium raimondii HOM05D002680 ORTHO05D001151 1.1e-07 59.3 44 61.4
Potri.002G168900 Populus trichocarpa HOM05D002680 ORTHO05D001151 1.1e-07 59.3 57 52.6
CiPaw.05G257600 Carya illinoinensis HOM05D002680 ORTHO05D001151 1.4e-07 58.9 42 59.5
Duzib068G0060 Durio zibethinus HOM05D002680 ORTHO05D001151 1.4e-07 58.9 44 63.6
QL02p031030 Quercus lobata HOM05D002680 ORTHO05D001151 1.4e-07 58.9 43 62.8
Aqoxy7G00139 Aquilegia oxysepala HOM05D002680 ORTHO05D001151 1.8e-07 58.5 44 63.6
Eucgr.E00069 Eucalyptus grandis HOM05D002680 ORTHO05D001151 1.8e-07 58.5 44 59.1
PSO135G1041 Papaver somniferum HOM05D002680 ORTHO05D001151 1.8e-07 58.5 45 60.0
PSO384G2121 Papaver somniferum HOM05D002680 ORTHO05D001151 1.8e-07 58.5 45 60.0
GSVIVG01027071001 Vitis vinifera HOM05D002680 ORTHO05D001151 1.8e-07 58.5 45 64.4
Cfa003823 Carpinus fangiana HOM05D002680 ORTHO05D001151 2.4e-07 58.2 44 61.4
Dinv28333 Davidia involucrata HOM05D002680 ORTHO05D001151 2.4e-07 58.2 44 65.9
Gohir.D11G100900 Gossypium hirsutum HOM05D002680 ORTHO05D001151 2.4e-07 58.2 44 61.4
Gorai.007G107400 Gossypium raimondii HOM05D002680 ORTHO05D001151 2.4e-07 58.2 44 61.4
Peaxi162Scf00786g00439 Petunia axillaris HOM05D002680 ORTHO05D001151 2.4e-07 58.2 43 62.8
Sed0009238 Sechium edule HOM05D002680 ORTHO05D001151 2.4e-07 58.2 54 51.9
GSVIVG01028716001 Vitis vinifera HOM05D002680 ORTHO05D001151 2.4e-07 58.2 45 62.2
CiPaw.01G074100 Carya illinoinensis HOM05D002680 ORTHO05D001151 3.1e-07 57.8 45 57.8
FvH4_7g16170 Fragaria vesca HOM05D002680 ORTHO05D001151 3.1e-07 57.8 45 62.2
Potri.012G031200 Populus trichocarpa HOM05D002680 ORTHO05D001151 3.1e-07 57.8 40 60.0
RcHm_v2.0_Chr1g0359121 Rosa chinensis HOM05D002680 ORTHO05D001151 3.1e-07 57.8 45 62.2
Sabra02G0143100 Salix brachista HOM05D002680 ORTHO05D001151 3.1e-07 57.8 45 62.2
SHI13236 Sapria himalayana HOM05D002680 ORTHO05D001151 3.1e-07 57.8 31 77.4
FAN03G1631 Fragaria x ananassa HOM05D002680 ORTHO05D001151 4.1e-07 57.4 44 63.6
PGR142G2074 Punica granatum HOM05D002680 ORTHO05D001151 4.1e-07 57.4 50 58.0
Cfa016365 Carpinus fangiana HOM05D002680 ORTHO05D001151 5.3e-07 57.0 44 59.1
CSS0015923 Camellia sinensis var. sinensis HOM05D002680 ORTHO05D001151 6.9e-07 56.6 46 60.9
CSS0031622 Camellia sinensis var. sinensis HOM05D002680 ORTHO05D001151 6.9e-07 56.6 46 60.9
Ciclev10024111m.g Citrus clementina HOM05D002680 ORTHO05D001151 9.0e-07 56.2 30 76.7
Dinv18728 Davidia involucrata HOM05D002680 ORTHO05D001151 9.0e-07 56.2 45 62.2
FAN06G1775 Fragaria x ananassa HOM05D002680 ORTHO05D001151 9.0e-07 56.2 44 61.4
Nitab4.5_0000838g0010 Nicotiana tabacum HOM05D002680 ORTHO05D001151 9.0e-07 56.2 30 76.7
Nitab4.5_0011592g0010 Nicotiana tabacum HOM05D002680 ORTHO05D001151 9.0e-07 56.2 30 76.7
Prupe.2G307600 Prunus persica HOM05D002680 ORTHO05D001151 9.0e-07 56.2 42 61.9
THA.LOC104827629 Tarenaya hassleriana HOM05D002680 ORTHO05D001151 9.0e-07 56.2 44 56.8
Actinidia28498 Actinidia chinensis HOM05D002680 ORTHO05D001151 1.2e-06 55.8 46 60.9
CAN.G986.30 Capsicum annuum HOM05D002680 ORTHO05D001151 1.2e-06 55.8 30 76.7
FAN01G0337 Fragaria x ananassa HOM05D002680 ORTHO05D001151 1.2e-06 55.8 31 77.4
FAN06G3883 Fragaria x ananassa HOM05D002680 ORTHO05D001151 1.2e-06 55.8 31 77.4
FAN10G0893 Fragaria x ananassa HOM05D002680 ORTHO05D001151 1.2e-06 55.8 43 60.5
FAN10G1630 Fragaria x ananassa HOM05D002680 ORTHO05D001151 1.2e-06 55.8 43 60.5
FAN10G3163 Fragaria x ananassa HOM05D002680 ORTHO05D001151 1.2e-06 55.8 31 77.4
FAN10G3947 Fragaria x ananassa HOM05D002680 ORTHO05D001151 1.2e-06 55.8 31 77.4
Solyc01g095640.2 Solanum lycopersicum HOM05D002680 ORTHO05D001151 1.2e-06 55.8 30 76.7
CSS0015793 Camellia sinensis var. sinensis HOM05D002680 ORTHO05D001151 1.5e-06 55.5 46 60.9
CANSAT56G4235 Cannabis sativa HOM05D002680 ORTHO05D001151 1.5e-06 55.5 30 76.7
CsaV3_5G000690 Cucumis sativus L. HOM05D002680 ORTHO05D001151 1.5e-06 55.5 44 54.5
FAN01G1254 Fragaria x ananassa HOM05D002680 ORTHO05D001151 1.5e-06 55.5 42 61.9
SalBow5G2861 Salvia bowleyana HOM05D002680 ORTHO05D001151 1.5e-06 55.5 30 73.3
A08p20290 Brassica napus HOM05D002680 ORTHO05D001151 2.0e-06 55.1 31 80.6
C08p10440 Brassica napus HOM05D000008 ORTHO05D001151 2.0e-06 55.1 31 80.6
BraA08t33988Z Brassica rapa HOM05D002680 ORTHO05D001151 2.0e-06 55.1 31 80.6
CSS0017773 Camellia sinensis var. sinensis HOM05D002680 ORTHO05D001151 2.0e-06 55.1 46 60.9
Carub.0006s3612 Capsella rubella HOM05D000008 ORTHO05D001151 2.0e-06 55.1 54 46.3
Lsat_1_v5_gn_4_33420 Lactuca sativa HOM05D002680 ORTHO05D001151 2.0e-06 55.1 30 76.7
Rhsim07G0083000 Rhododendron simsii HOM05D002680 ORTHO05D001151 2.0e-06 55.1 44 61.4
RcHm_v2.0_Chr1g0380141 Rosa chinensis HOM05D002680 ORTHO05D001151 2.0e-06 55.1 43 62.8
CANSAT21G2186 Cannabis sativa HOM05D002680 ORTHO05D001151 2.6e-06 54.7 52 55.8
FvH4_7g31070 Fragaria vesca HOM05D002680 ORTHO05D001151 2.6e-06 54.7 43 62.8
FAN06G0339 Fragaria x ananassa HOM05D002680 ORTHO05D001151 2.6e-06 54.7 43 62.8
FAN06G4252 Fragaria x ananassa HOM05D002680 ORTHO05D001151 2.6e-06 54.7 43 62.8
Manes.01G247600 Manihot esculenta HOM05D002680 ORTHO05D001151 2.6e-06 54.7 44 61.4
C01p24400 Brassica napus HOM05D002680 ORTHO05D001151 3.4e-06 54.3 33 72.7
BolC1t02386H Brassica oleracea HOM05D002680 ORTHO05D001151 3.4e-06 54.3 33 72.7
AT2G46410 Arabidopsis thaliana HOM05D002680 ORTHO05D001151 4.5e-06 53.9 44 54.5
Carub.0004s2911 Capsella rubella HOM05D002680 ORTHO05D001151 4.5e-06 53.9 44 54.5
CARHR141690 Cardamine hirsuta HOM05D002680 ORTHO05D001151 4.5e-06 53.9 44 54.5
Thhalv10001695m.g Eutrema salsugineum HOM05D002680 ORTHO05D001151 4.5e-06 53.9 44 54.5
Sp4g28430 Schrenkiella parvula HOM05D002680 ORTHO05D001151 4.5e-06 53.9 44 54.5
Aa31LG5G900 Aethionema arabicum HOM05D002680 ORTHO05D001151 5.9e-06 53.5 55 43.6
Aqoxy7G00138 Aquilegia oxysepala HOM05D002680 ORTHO05D001151 5.9e-06 53.5 38 65.8
ECA234G3604 Erigeron canadensis HOM05D002680 ORTHO05D001151 5.9e-06 53.5 30 70.0
Eucgr.E00851 Eucalyptus grandis HOM05D002680 ORTHO05D001151 5.9e-06 53.5 44 56.8
BcaC01g05068 Brassica carinata HOM05D002680 ORTHO05D001151 7.7e-06 53.1 45 57.8
A03p25640 Brassica napus HOM05D002680 ORTHO05D001151 7.7e-06 53.1 45 57.8
BraA03t11779Z Brassica rapa HOM05D002680 ORTHO05D001151 7.7e-06 53.1 45 57.8
COL.COLO4_35651 Corchorus olitorius HOM05D002680 ORTHO05D001151 7.7e-06 53.1 42 54.8
MD07G1285700 Malus domestica HOM05D002680 ORTHO05D001151 7.7e-06 53.1 43 60.5
vmacro13903 Vaccinium macrocarpon HOM05D002680 ORTHO05D001151 7.7e-06 53.1 45 57.8
AT4G01060 Arabidopsis thaliana HOM05D000008 ORTHO05D001151 1.0e-05 52.8 54 44.4
A04p34360 Brassica napus HOM05D002680 ORTHO05D001151 1.0e-05 52.8 45 57.8
C04p72160 Brassica napus HOM05D002680 ORTHO05D001151 1.0e-05 52.8 45 57.8
BolC4t28704H Brassica oleracea HOM05D002680 ORTHO05D001151 1.0e-05 52.8 45 57.8
BraA04t18897Z Brassica rapa HOM05D002680 ORTHO05D001151 1.0e-05 52.8 45 57.8
Eucgr.K00332 Eucalyptus grandis HOM05D002680 ORTHO05D001151 1.0e-05 52.8 33 69.7
MD06G1104200 Malus domestica HOM05D002680 ORTHO05D001151 1.0e-05 52.8 50 48.0
TPR.G6611 Trifolium pratense HOM05D002680 ORTHO05D001151 1.0e-05 52.8 48 54.2


User provided reference genes

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