Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 0.0e+00 1148.3 560 100.0
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 0.0e+00 1124.0 560 97.7
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 0.0e+00 1079.3 561 93.0
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 9.6e-306 1052.7 546 93.2
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.1e-298 1029.2 546 91.6
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 8.5e-294 1013.1 566 87.1
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 4.3e-290 1000.7 552 88.8
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 4.3e-290 1000.7 552 88.9
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 4.3e-290 1000.7 552 88.8
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 4.3e-290 1000.7 560 86.1
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 5.7e-290 1000.3 552 88.9
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 1.3e-289 999.2 553 88.8
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.3e-286 989.2 518 93.6
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.1e-280 969.5 560 83.6
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 5.9e-279 963.8 556 83.5
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 3.6e-276 954.5 565 82.3
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.4e-275 952.6 557 82.6
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 2.3e-275 951.8 544 86.8
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 6.7e-275 950.3 565 81.4
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.3e-273 946.0 561 82.0
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 2.7e-271 938.3 566 80.6
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 1.0e-270 936.4 566 80.9
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 1.0e-270 936.4 566 80.4
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 1.7e-270 935.6 566 80.6
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 2.2e-270 935.3 554 79.1
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 5.0e-270 934.1 566 80.4
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 8.5e-270 933.3 566 80.2
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 8.5e-270 933.3 556 79.5
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 3.2e-269 931.4 564 77.8
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.7e-268 928.3 546 79.9
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 4.7e-268 927.5 560 77.0
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 4.7e-268 927.5 555 78.6
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 4.0e-267 924.5 559 77.3
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 5.2e-267 924.1 546 78.9
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 6.8e-267 923.7 548 78.6
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 8.8e-267 923.3 553 78.8
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 1.5e-266 922.5 555 77.8
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 2.0e-266 922.2 556 78.8
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 3.4e-266 921.4 532 80.6
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 9.8e-266 919.8 555 78.4
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 1.7e-265 919.1 531 81.2
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 1.7e-265 919.1 553 78.5
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 2.2e-265 918.7 566 76.9
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 2.2e-265 918.7 553 78.5
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 4.8e-265 917.5 554 77.4
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.4e-264 916.0 562 79.7
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.8e-264 915.6 535 80.7
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 2.7e-263 911.8 546 78.2
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 1.7e-262 909.1 549 77.8
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 3.8e-262 907.9 549 77.8
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.6e-260 902.5 560 75.4
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.6e-260 902.5 531 79.7
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 1.6e-260 902.5 546 77.7
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 8.0e-260 900.2 546 77.3
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 1.4e-259 899.4 553 75.9
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 2.3e-259 898.7 553 77.0
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 6.8e-259 897.1 555 76.6
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 8.8e-259 896.7 555 76.6
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.5e-258 896.0 556 77.0
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 2.0e-258 895.6 553 76.5
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 8.3e-257 890.2 545 76.0
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 1.8e-256 889.0 561 75.9
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 3.1e-256 888.3 563 74.4
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 3.1e-256 888.3 561 75.9
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 7.0e-256 887.1 524 79.0
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 1.2e-255 886.3 546 76.0
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.0e-255 885.6 545 76.0
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 2.7e-255 885.2 562 78.3
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 4.5e-255 884.4 583 72.7
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 1.3e-254 882.9 550 74.4
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 8.6e-254 880.2 548 75.4
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 1.1e-253 879.8 570 73.5
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 1.1e-253 879.8 544 75.7
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.5e-253 879.4 549 74.3
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 3.3e-253 878.2 532 76.7
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 5.6e-253 877.5 546 74.9
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 5.6e-253 877.5 532 77.1
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 7.3e-253 877.1 546 76.2
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 9.5e-253 876.7 554 74.2
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.2e-252 876.3 563 74.2
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 2.1e-252 875.5 532 76.9
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 2.3e-251 872.1 586 71.3
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 8.9e-251 870.2 544 74.8
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 1.2e-250 869.8 557 75.0
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 1.5e-250 869.4 546 74.2
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 2.0e-250 869.0 556 73.4
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.6e-250 868.6 544 75.4
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 2.6e-250 868.6 563 73.4
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 4.4e-250 867.8 532 75.8
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 9.8e-250 866.7 547 73.7
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 2.9e-249 865.1 517 78.1
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 2.4e-248 862.1 548 74.5
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 3.2e-248 861.7 544 74.8
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 5.4e-248 860.9 542 73.2
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 8.6e-246 853.6 544 73.0
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 3.3e-245 851.7 567 72.8
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 3.3e-245 851.7 544 73.0
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 2.8e-244 848.6 546 71.4
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.8e-243 845.9 531 74.8
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 2.3e-243 845.5 532 73.7
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 4.0e-243 844.7 533 75.0
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 5.2e-243 844.3 548 72.1
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 6.8e-243 844.0 555 72.8
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 1.7e-241 839.3 542 73.2
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 2.2e-241 839.0 554 72.6
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 2.9e-241 838.6 553 71.8
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 3.7e-241 838.2 584 70.0
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 3.2e-240 835.1 544 72.6
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 3.2e-240 835.1 546 71.4
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.1e-240 834.7 507 78.7
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.3e-235 818.9 517 77.2
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 5.2e-235 817.8 541 71.5
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 4.9e-233 811.2 522 73.2
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 2.3e-230 802.4 545 70.5
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 4.7e-228 794.7 495 76.8
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 1.7e-222 776.2 514 72.4
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 9.9e-218 760.4 539 69.0
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 1.7e-217 759.6 534 70.2
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 4.9e-217 758.1 539 68.5
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 1.2e-215 753.4 561 65.8
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.0e-214 748.8 512 70.5
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 1.9e-208 729.6 554 63.7
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.5e-207 725.3 555 64.9
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.3e-198 696.8 475 70.7
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 2.8e-196 689.1 567 62.1
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 4.8e-196 688.3 552 62.7
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 4.0e-195 685.3 578 60.9
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 2.8e-188 662.5 543 60.0
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 6.3e-188 661.4 416 76.2
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 2.0e-141 506.9 326 74.8
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.0e-134 484.6 278 80.2
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.6e-130 470.7 305 72.8
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 6.2e-127 458.8 263 84.4
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 5.2e-126 455.7 350 64.0
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 2.0e-122 443.7 528 49.2
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 4.4e-117 426.0 330 64.5
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.2e-107 393.3 294 65.6
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 4.3e-96 356.3 288 60.4
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.6e-95 353.2 217 76.0
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 3.1e-94 350.1 217 68.7
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 2.1e-87 327.4 283 58.0
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 4.6e-82 309.7 565 35.2
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 5.1e-81 306.2 252 63.9
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 1.1e-75 288.5 198 70.2
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.0e-68 265.4 201 65.2
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 5.9e-61 239.6 427 32.8
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.0e-57 228.8 145 67.6
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 3.1e-54 217.2 228 48.2
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 2.8e-47 194.1 117 74.4
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 4.4e-32 143.7 128 53.1
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.2e-31 141.4 106 61.3
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 8.3e-31 139.4 100 62.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 3.1e-30 137.5 106 59.4
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 3.5e-29 134.0 82 70.7
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 6.1e-26 123.2 81 66.7
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 3.1e-22 110.9 102 55.9
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 8.9e-17 92.8 54 68.5
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 4.9e-15 87.0 56 69.6
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 4.3e-11 73.9 43 74.4
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 2.6e-08 64.7 63 42.9
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 4.4e-08 63.9 71 45.1
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 9.8e-08 62.8 80 33.8
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 3.2e-06 57.8 63 36.5
COL.COLO4_10976 Corchorus olitorius HOM05D000082 ORTHO05D008126 5.4e-06 57.0 75 33.3
Gohir.A09G015300 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.4e-06 57.0 52 38.5
Gohir.D09G013700 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.4e-06 57.0 52 38.5
Gohir.D09G013800 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.4e-06 57.0 52 38.5
Gorai.006G015900 Gossypium raimondii HOM05D000082 ORTHO05D000038 5.4e-06 57.0 52 38.5
Gorai.006G016300 Gossypium raimondii HOM05D000082 ORTHO05D000038 5.4e-06 57.0 51 39.2
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 7.0e-06 56.6 68 36.8
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 7.0e-06 56.6 68 36.8
Lalb_Chr19g0125231 Lupinus albus HOM05D000082 ORTHO05D001639 7.0e-06 56.6 56 39.3
CDE04G2102 Ceratophyllum demersum HOM05D000082 ORTHO05D001639 9.2e-06 56.2 59 33.9
Potri.011G119900 Populus trichocarpa HOM05D000354 ORTHO05D001065 9.2e-06 56.2 48 37.5
Sabra11G0104300 Salix brachista HOM05D000157 ORTHO05D001065 9.2e-06 56.2 48 37.5
TPR.G18937 Trifolium pratense HOM05D000082 ORTHO05D000038 9.2e-06 56.2 63 36.5


User provided reference genes

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