Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 1.1e-232 809.7 422 100.0
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 9.4e-229 796.6 422 98.1
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 6.1e-228 793.9 422 97.4
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 6.7e-227 790.4 420 97.4
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 2.2e-225 785.4 420 96.4
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 2.2e-225 785.4 420 96.4
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 2.2e-225 785.4 422 95.7
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 3.7e-225 784.6 422 96.0
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.1e-224 783.1 422 95.3
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 1.4e-224 782.7 422 95.5
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 1.8e-224 782.3 422 95.3
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 3.1e-224 781.6 422 95.7
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 3.1e-224 781.6 422 95.7
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 3.1e-224 781.6 422 95.5
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 3.1e-224 781.6 422 95.5
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 1.2e-223 779.6 422 95.3
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 5.9e-223 777.3 422 95.0
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 5.9e-223 777.3 422 95.0
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 8.5e-222 773.5 422 94.3
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 2.4e-216 755.4 418 92.1
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 1.4e-211 739.6 389 98.7
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 1.4e-211 739.6 418 90.2
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.3e-211 738.8 418 89.7
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 6.8e-211 737.3 420 88.8
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 2.6e-210 735.3 419 89.5
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 3.4e-210 734.9 418 89.5
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 2.2e-209 732.3 418 89.0
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 2.2e-209 732.3 418 88.5
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 4.8e-209 731.1 420 88.6
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 4.8e-209 731.1 419 88.5
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 2.4e-208 728.8 418 88.0
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 2.4e-208 728.8 418 88.3
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 3.1e-208 728.4 418 88.5
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 5.4e-208 727.6 420 87.6
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 7.0e-208 727.2 418 88.5
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 7.0e-208 727.2 422 87.4
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 9.1e-208 726.9 418 87.6
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 9.1e-208 726.9 420 88.6
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 1.6e-207 726.1 420 86.9
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 1.6e-207 726.1 420 87.4
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 2.0e-207 725.7 419 87.6
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.7e-207 725.3 418 87.8
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 3.5e-207 724.9 418 88.0
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 3.5e-207 724.9 418 88.0
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 4.5e-207 724.5 418 88.5
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 7.7e-207 723.8 420 88.3
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 1.3e-206 723.0 418 88.0
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 1.7e-206 722.6 418 87.6
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 1.7e-206 722.6 418 87.8
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 1.7e-206 722.6 419 87.4
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.7e-206 722.6 420 86.7
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 2.3e-206 722.2 418 87.6
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.3e-206 722.2 427 86.4
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 2.3e-206 722.2 418 86.8
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 3.8e-206 721.5 419 87.4
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 3.8e-206 721.5 420 87.4
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 5.0e-206 721.1 420 86.7
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 6.5e-206 720.7 420 86.7
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 6.5e-206 720.7 420 86.7
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 6.5e-206 720.7 420 86.7
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 1.1e-205 719.9 420 87.4
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.1e-205 719.9 419 87.6
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 3.2e-205 718.4 418 86.8
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.2e-205 718.4 418 86.8
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 3.2e-205 718.4 419 87.1
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 4.2e-205 718.0 418 87.1
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 4.2e-205 718.0 418 87.1
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 5.5e-205 717.6 419 87.1
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 5.5e-205 717.6 420 87.6
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 7.2e-205 717.2 420 86.7
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 9.5e-205 716.8 420 86.9
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 1.2e-204 716.5 420 86.7
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 1.2e-204 716.5 420 87.4
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 1.6e-204 716.1 419 87.4
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 1.6e-204 716.1 417 87.1
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 2.1e-204 715.7 418 87.1
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 2.8e-204 715.3 420 87.4
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 3.6e-204 714.9 420 86.2
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 3.6e-204 714.9 420 86.0
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 6.1e-204 714.1 418 86.8
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 1.0e-203 713.4 418 86.1
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.4e-203 713.0 420 85.5
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 1.4e-203 713.0 418 85.9
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 3.0e-203 711.8 418 86.4
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 5.2e-203 711.1 418 85.9
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 8.8e-203 710.3 420 85.5
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 8.8e-203 710.3 418 87.6
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.2e-202 709.9 470 79.6
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.2e-202 709.9 470 79.6
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.2e-202 709.9 437 83.5
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.2e-202 709.9 437 84.7
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 1.5e-202 709.5 417 87.3
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 1.5e-202 709.5 418 85.6
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 4.4e-202 708.0 418 85.4
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 7.5e-202 707.2 418 85.4
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 7.5e-202 707.2 420 85.2
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 9.8e-202 706.8 451 81.4
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 2.2e-201 705.7 420 85.0
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 3.7e-201 704.9 420 85.0
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.7e-201 704.9 435 83.0
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 3.7e-201 704.9 420 85.2
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 1.1e-200 703.4 422 84.8
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 1.1e-200 703.4 418 85.2
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 2.4e-200 702.2 418 84.7
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 3.1e-200 701.8 419 85.9
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 3.1e-200 701.8 418 85.2
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 7.0e-200 700.7 428 83.9
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 1.2e-199 699.9 419 86.2
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 1.6e-199 699.5 420 85.2
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.0e-199 699.1 429 83.9
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.0e-198 696.8 420 84.3
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 6.6e-198 694.1 447 82.3
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.9e-197 692.6 422 83.2
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 2.8e-196 688.7 418 82.5
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 2.3e-195 685.6 414 84.8
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 5.2e-195 684.5 418 82.5
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 1.1e-192 676.8 501 72.7
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.8e-192 676.0 420 82.1
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.1e-188 662.5 415 82.4
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.1e-187 660.2 470 75.5
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 1.1e-187 660.2 423 79.2
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 2.3e-187 659.1 374 89.6
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.5e-186 656.4 420 80.5
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 3.4e-186 655.2 420 80.7
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.7e-183 645.6 416 82.5
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 8.1e-180 634.0 377 83.8
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.1e-179 633.6 385 83.6
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 1.5e-178 629.8 372 84.9
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.5e-178 629.8 363 87.9
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 1.7e-177 626.3 405 78.5
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 4.9e-177 624.8 398 79.6
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 1.0e-174 617.1 416 75.7
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 2.1e-172 609.4 418 76.1
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 1.7e-166 589.7 400 73.5
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 2.0e-162 576.2 331 87.3
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.0e-162 576.2 408 75.2
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.4e-152 543.5 309 89.6
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 5.4e-152 541.6 396 68.7
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 5.1e-150 535.0 418 65.3
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 7.1e-144 514.6 398 66.1
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 7.6e-138 494.6 458 62.7
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 2.2e-132 476.5 278 88.5
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.1e-131 472.6 284 84.2
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 6.5e-129 464.9 392 67.6
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 5.5e-120 435.3 260 84.6
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.5e-112 409.8 241 87.1
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 2.6e-109 399.8 236 83.9
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 6.5e-105 385.2 222 86.5
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 5.0e-97 359.0 244 75.4
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 1.9e-96 357.1 205 86.8
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 2.0e-85 320.5 287 62.7
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 1.1e-72 278.1 293 51.5
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 1.3e-68 264.6 207 66.2
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 9.5e-64 248.4 147 83.0
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 8.3e-60 235.3 189 61.4
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 1.3e-52 211.5 133 75.2
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 2.3e-49 200.7 194 61.3
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 6.9e-46 189.1 119 75.6
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 8.4e-44 182.2 112 87.5
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.1e-43 181.8 161 64.6
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 4.0e-38 163.3 106 78.3
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 2.9e-36 157.1 289 35.3
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 4.2e-35 153.3 157 59.9
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 5.4e-35 152.9 157 59.2
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 2.4e-30 137.5 80 85.0
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 4.9e-28 129.8 178 38.8
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 2.8e-23 114.0 129 52.7
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 6.2e-23 112.8 69 81.2
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 1.1e-14 85.5 97 51.5
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 1.5e-13 81.6 48 91.7
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 5.9e-13 79.7 51 80.4
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 9.4e-11 72.4 40 92.5
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 1.4e-09 68.6 37 83.8
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 3.9e-09 67.0 62 53.2
arahy.Tifrunner.gnm1.ann1.SHHZ9W Arachis hypogaea HOM05D002061 ORTHO05D002849 4.3e-08 63.5 415 24.3
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 2.2e-07 61.2 112 33.0
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 4.8e-07 60.1 110 32.7
Cre05.g241850 Chlamydomonas reinhardtii HOM05D002061 ORTHO05D002849 2.4e-06 57.8 370 24.3
arahy.Tifrunner.gnm1.ann1.DG289Q Arachis hypogaea HOM05D000064 ORTHO05D004075 6.9e-06 56.2 89 40.4
arahy.Tifrunner.gnm1.ann1.WB2JVN Arachis hypogaea HOM05D002038 ORTHO05D002165 6.9e-06 56.2 89 40.4


User provided reference genes

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