Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 0.0e+00 1133.2 590 100.0
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 6.8e-302 1040.0 578 93.9
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 4.0e-286 987.6 593 89.0
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 2.2e-276 955.3 591 87.0
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 6.5e-260 900.6 616 81.3
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 5.5e-259 897.5 612 81.4
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 5.5e-227 791.2 610 74.8
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 2.2e-220 769.2 601 75.0
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 2.8e-215 752.3 606 73.8
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 1.0e-212 743.8 603 73.6
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 1.0e-212 743.8 603 73.6
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 3.2e-211 738.8 602 73.8
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 4.4e-168 595.5 643 56.1
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 1.3e-156 557.4 655 54.4
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 1.8e-137 493.8 352 72.7
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 5.3e-137 492.3 422 63.7
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 6.9e-137 491.9 344 72.7
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 6.9e-137 491.9 413 63.7
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.2e-136 491.1 409 64.3
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.5e-136 490.7 409 64.5
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 2.0e-136 490.3 398 64.6
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 2.6e-136 490.0 627 50.9
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 1.3e-135 487.6 412 64.3
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 2.2e-135 486.9 600 52.7
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 3.8e-135 486.1 600 52.7
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 3.8e-135 486.1 613 50.7
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 1.1e-134 484.6 419 62.8
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 1.4e-134 484.2 395 65.6
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 1.4e-134 484.2 341 72.7
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 1.9e-134 483.8 365 68.2
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 3.2e-134 483.0 428 62.4
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 4.2e-134 482.6 338 73.1
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 7.2e-134 481.9 600 52.2
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 9.3e-134 481.5 605 50.7
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 1.6e-133 480.7 645 49.6
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 2.1e-133 480.3 426 62.0
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 3.6e-133 479.6 402 64.4
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 3.6e-133 479.6 348 71.3
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.0e-132 478.0 621 50.6
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 1.0e-132 478.0 346 70.5
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 2.3e-132 476.9 624 49.5
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 6.7e-132 475.3 596 51.3
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 8.7e-132 474.9 418 61.5
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 4.3e-131 472.6 598 49.8
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 5.7e-131 472.2 350 70.9
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 9.7e-131 471.5 462 57.6
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.6e-130 470.7 632 49.8
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 2.2e-130 470.3 348 69.3
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.2e-130 470.3 631 50.1
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 2.2e-130 470.3 397 64.0
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 2.2e-130 470.3 447 60.0
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 2.8e-130 469.9 416 61.5
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 1.1e-129 468.0 635 49.0
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 2.4e-129 466.8 411 62.3
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 4.1e-129 466.1 338 68.3
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 9.1e-129 464.9 601 50.4
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 1.5e-128 464.2 351 68.4
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 4.5e-128 462.6 601 48.4
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 4.5e-128 462.6 601 49.8
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 1.0e-127 461.5 346 68.2
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 1.3e-127 461.1 510 52.9
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 1.7e-127 460.7 623 49.4
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 2.2e-127 460.3 408 61.5
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 5.0e-127 459.1 512 55.3
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 8.5e-127 458.4 439 59.0
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 1.4e-126 457.6 413 60.3
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 4.2e-126 456.1 603 49.1
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 9.4e-126 454.9 583 49.6
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 1.6e-125 454.1 606 48.3
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 4.6e-125 452.6 619 49.4
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.0e-124 451.4 609 48.1
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 2.3e-124 450.3 448 58.9
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 3.0e-124 449.9 582 52.2
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 6.7e-124 448.7 598 47.3
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 2.0e-123 447.2 348 63.8
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 3.3e-123 446.4 300 74.3
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 4.4e-123 446.0 425 57.6
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 1.3e-122 444.5 333 69.7
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 1.8e-121 440.7 468 55.8
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 6.5e-119 432.2 353 62.9
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.2e-117 427.9 341 65.4
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 1.1e-115 421.4 285 76.8
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 1.5e-115 421.0 425 58.4
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 2.6e-115 420.2 353 61.5
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 2.6e-115 420.2 617 46.0
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 1.7e-114 417.5 384 58.6
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 7.0e-113 412.1 436 54.8
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 3.5e-112 409.8 307 71.0
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 1.1e-110 404.8 326 64.1
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 3.2e-110 403.3 361 60.1
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 9.1e-105 385.2 339 59.9
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 9.1e-105 385.2 276 72.5
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 9.1e-105 385.2 276 72.5
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 1.6e-104 384.4 276 72.1
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 4.2e-102 376.3 339 59.6
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 1.2e-101 374.8 256 73.8
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 1.3e-74 285.0 286 54.5
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 7.0e-73 279.3 170 79.4
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 2.0e-72 277.7 479 40.7
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 3.6e-69 266.9 534 38.0
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 7.8e-64 249.2 212 63.7
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 3.9e-63 246.9 269 50.6
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 1.5e-54 218.4 186 63.4
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 1.2e-51 208.8 207 56.0
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 3.8e-50 203.8 297 42.8
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 9.3e-49 199.1 286 43.4
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 8.7e-47 192.6 152 66.4
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 1.6e-45 188.3 280 41.8
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 1.6e-45 188.3 307 37.8
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 3.4e-43 180.6 147 66.0
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 4.2e-33 147.1 153 51.0
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 3.3e-30 137.5 283 36.4
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 1.3e-21 109.0 83 63.9
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 3.1e-20 104.4 83 63.9
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 3.1e-20 104.4 83 63.9
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 5.3e-20 103.6 83 62.7
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 2.9e-18 97.8 73 68.5
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 8.5e-18 96.3 75 72.0
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 1.4e-17 95.5 73 67.1
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 2.1e-16 91.7 71 62.0
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 6.1e-16 90.1 77 58.4
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 3.0e-15 87.8 56 75.0
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 3.0e-15 87.8 56 75.0
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 2.2e-13 81.6 230 30.4
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 6.3e-13 80.1 64 64.1
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 3.1e-12 77.8 340 29.1
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 3.6e-08 64.3 54 61.1
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 3.6e-08 64.3 54 61.1
BcaC01g01198 Brassica carinata HOM05D041247 ORTHO05D016715 1.4e-07 62.4 71 50.7
BcaB01g00402 Brassica carinata HOM05D041247 ORTHO05D016715 1.8e-07 62.0 71 50.7
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 6.7e-07 60.1 202 25.7
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 2.6e-06 58.2 198 25.3
BcaNung00771 Brassica carinata HOM05D013368 ORTHO05D031982 4.4e-06 57.4 46 58.7
BolC7t43482H Brassica oleracea HOM05D013368 ORTHO05D031982 4.4e-06 57.4 46 58.7
C03p74890 Brassica napus HOM05D013368 ORTHO05D031982 5.7e-06 57.0 46 56.5
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 5.7e-06 57.0 202 24.3
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 7.4e-06 56.6 188 28.7
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 9.7e-06 56.2 172 30.2
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 9.7e-06 56.2 171 32.7


User provided reference genes

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