Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G80555 Arabidopsis thaliana HOM05D001993 ORTHO05D014738 2.4e-66 255.4 131 100.0
AL2G40910 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 6.4e-51 204.1 115 91.3
A02p23460 Brassica napus HOM05D001993 ORTHO05D004040 1.8e-45 186.0 122 77.0
BraA02t07338Z Brassica rapa HOM05D001993 ORTHO05D004040 1.8e-45 186.0 122 77.0
Sp5g35230 Schrenkiella parvula HOM05D001993 ORTHO05D004040 1.8e-45 186.0 117 83.8
BcaC03g15954 Brassica carinata HOM05D001993 ORTHO05D004040 3.1e-45 185.3 122 78.7
C02p37160 Brassica napus HOM05D001993 ORTHO05D004040 4.0e-45 184.9 117 81.2
BolC2t09728H Brassica oleracea HOM05D001993 ORTHO05D004040 8.9e-45 183.7 122 77.0
Carub.0002s2700 Capsella rubella HOM05D001993 ORTHO05D004040 7.6e-44 180.6 116 81.9
CARHR074080 Cardamine hirsuta HOM05D001993 ORTHO05D004040 3.8e-43 178.3 116 80.2
CARHR205690 Cardamine hirsuta HOM05D001993 ORTHO05D004040 6.6e-40 167.5 118 75.4
BcaB05g25259 Brassica carinata HOM05D001993 ORTHO05D004040 3.8e-35 151.8 114 69.3
Cpa.g.sc52.151 Carica papaya HOM05D001993 ORTHO05D004040 1.4e-29 133.3 111 62.2
Atru.chr13.1967 Acer truncatum HOM05D001993 ORTHO05D004040 1.8e-29 132.9 111 63.1
GSVIVG01023010001 Vitis vinifera HOM05D001993 ORTHO05D004040 6.9e-29 131.0 117 59.0
Cfa001917 Carpinus fangiana HOM05D001993 ORTHO05D004040 9.0e-29 130.6 103 64.1
Haze_16625 Corylus avellana HOM05D001993 ORTHO05D004040 2.0e-28 129.4 103 63.1
TWI18G1017 Tripterygium wilfordii HOM05D001993 ORTHO05D004040 2.0e-28 129.4 100 64.0
THA.LOC104808191 Tarenaya hassleriana HOM05D001993 ORTHO05D004040 2.6e-28 129.0 110 60.0
A02p23450 Brassica napus HOM05D001993 ORTHO05D004040 3.4e-28 128.6 111 57.7
BraA02t07337Z Brassica rapa HOM05D001993 ORTHO05D004040 3.4e-28 128.6 111 57.7
Gohir.A10G072700 Gossypium hirsutum HOM05D001993 ORTHO05D004040 4.5e-28 128.3 111 59.5
CiPaw.01G251500 Carya illinoinensis HOM05D001993 ORTHO05D004040 7.6e-28 127.5 98 65.3
CSS0034242 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 9.9e-28 127.1 88 68.2
Rhsim08G0209300 Rhododendron simsii HOM05D001993 ORTHO05D004040 9.9e-28 127.1 88 69.3
Sabra01G0154500 Salix brachista HOM05D001993 ORTHO05D004040 9.9e-28 127.1 109 61.5
Sp5g29930 Schrenkiella parvula HOM05D001993 ORTHO05D004040 9.9e-28 127.1 110 60.9
A02p23480 Brassica napus HOM05D001993 ORTHO05D004040 1.3e-27 126.7 113 56.6
BraA02t07340Z Brassica rapa HOM05D001993 ORTHO05D004040 1.3e-27 126.7 113 56.6
CSS0006698 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 1.3e-27 126.7 88 68.2
Gohir.D10G078300 Gossypium hirsutum HOM05D001993 ORTHO05D004040 1.3e-27 126.7 111 58.6
Gorai.011G085100 Gossypium raimondii HOM05D001993 ORTHO05D004040 1.3e-27 126.7 111 58.6
AT1G80560 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 1.7e-27 126.3 111 56.8
AT5G14200 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 1.7e-27 126.3 105 61.9
BcaC03g15957 Brassica carinata HOM05D001993 ORTHO05D004040 1.7e-27 126.3 113 56.6
BolC2t09727H Brassica oleracea HOM05D001993 ORTHO05D004040 1.7e-27 126.3 111 56.8
BolC2t09729H Brassica oleracea HOM05D001993 ORTHO05D004040 1.7e-27 126.3 113 56.6
AL2G40900 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 2.2e-27 125.9 111 57.7
AL6G24870 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 2.2e-27 125.9 105 61.0
C02p37150 Brassica napus HOM05D001993 ORTHO05D004040 2.2e-27 125.9 111 56.8
Carub.0006s1240 Capsella rubella HOM05D001993 ORTHO05D004040 2.2e-27 125.9 112 58.0
Ciclev10025744m.g Citrus clementina HOM05D001993 ORTHO05D004040 2.2e-27 125.9 120 59.2
C02p37180 Brassica napus HOM05D001993 ORTHO05D004040 2.9e-27 125.6 113 56.6
Dinv23318 Davidia involucrata HOM05D001993 ORTHO05D004040 2.9e-27 125.6 90 67.8
Hma1.2p1_0135F.1_g061690 Hydrangea macrophylla HOM05D001993 ORTHO05D004040 3.8e-27 125.2 103 62.1
BcaB05g25258 Brassica carinata HOM05D001993 ORTHO05D004040 4.9e-27 124.8 105 61.9
QL05p033532 Quercus lobata HOM05D001993 ORTHO05D004040 6.4e-27 124.4 102 62.7
Potri.001G185600 Populus trichocarpa HOM05D001993 ORTHO05D004040 1.1e-26 123.6 118 58.5
Sp5g35220 Schrenkiella parvula HOM05D001993 ORTHO05D004040 1.1e-26 123.6 114 56.1
Actinidia08952 Actinidia chinensis HOM05D001993 ORTHO05D004040 1.9e-26 122.9 90 64.4
AT1G31180 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 1.9e-26 122.9 105 61.0
Dinv38158 Davidia involucrata HOM05D001993 ORTHO05D004040 1.9e-26 122.9 98 65.3
Eucgr.F03933 Eucalyptus grandis HOM05D001993 ORTHO05D004040 1.9e-26 122.9 95 64.2
Thhalv10018649m.g Eutrema salsugineum HOM05D001993 ORTHO05D004040 1.9e-26 122.9 110 55.5
Manes.11G062800 Manihot esculenta HOM05D001993 ORTHO05D004040 1.9e-26 122.9 121 57.0
A07p45110 Brassica napus HOM05D001993 ORTHO05D004040 2.4e-26 122.5 111 56.8
BraA07t32014Z Brassica rapa HOM05D001993 ORTHO05D004040 3.2e-26 122.1 111 56.8
Aa31LG11G14990 Aethionema arabicum HOM05D001993 ORTHO05D004040 5.5e-26 121.3 105 60.0
CARHR199140 Cardamine hirsuta HOM05D001993 ORTHO05D004040 5.5e-26 121.3 105 61.9
Carub.0002s2699 Capsella rubella HOM05D001993 ORTHO05D004040 7.1e-26 120.9 114 54.4
vmacro06416 Vaccinium macrocarpon HOM05D001993 ORTHO05D004040 7.1e-26 120.9 105 57.1
Aqoxy1G01546 Aquilegia oxysepala HOM05D001993 ORTHO05D004040 9.3e-26 120.6 90 63.3
Prupe.3G094300 Prunus persica HOM05D001993 ORTHO05D004040 9.3e-26 120.6 91 62.6
A02p02370 Brassica napus HOM05D001993 ORTHO05D004040 1.2e-25 120.2 87 66.7
C02p06590 Brassica napus HOM05D001993 ORTHO05D004040 1.2e-25 120.2 87 66.7
BraA02t05207Z Brassica rapa HOM05D001993 ORTHO05D004040 1.2e-25 120.2 87 66.7
MD17G1218700 Malus domestica HOM05D001993 ORTHO05D004040 1.2e-25 120.2 86 66.3
RcHm_v2.0_Chr2g0133821 Rosa chinensis HOM05D001993 ORTHO05D004040 1.2e-25 120.2 96 61.5
C06p53940 Brassica napus HOM05D001993 ORTHO05D004040 2.1e-25 119.4 111 55.0
CARHR125330 Cardamine hirsuta HOM05D001993 ORTHO05D004040 2.1e-25 119.4 97 61.9
Sc11g0002740 Simmondsia chinensis HOM05D001993 ORTHO05D004040 2.1e-25 119.4 101 55.4
THA.LOC104812454 Tarenaya hassleriana HOM05D001993 ORTHO05D004040 2.1e-25 119.4 105 61.9
Aqoxy6G02753 Aquilegia oxysepala HOM05D001993 ORTHO05D004040 2.7e-25 119.0 115 51.3
CSS0044698 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 2.7e-25 119.0 88 63.6
HanXRQChr16g0510241 Helianthus annuus HOM05D001993 ORTHO05D004040 2.7e-25 119.0 90 63.3
vmacro19031 Vaccinium macrocarpon HOM05D001993 ORTHO05D004040 3.5e-25 118.6 98 58.2
MSTRG.22778 Avicennia marina HOM05D001993 ORTHO05D004040 4.6e-25 118.2 88 63.6
BolC2t06605H Brassica oleracea HOM05D001993 ORTHO05D004040 4.6e-25 118.2 87 66.7
FvH4_1g23550 Fragaria vesca HOM05D001993 ORTHO05D004040 4.6e-25 118.2 96 63.5
Nn8g39686 Nelumbo nucifera HOM05D001993 ORTHO05D004040 4.6e-25 118.2 86 66.3
PGR102G0990 Punica granatum HOM05D001993 ORTHO05D004040 4.6e-25 118.2 86 64.0
COL.COLO4_36709 Corchorus olitorius HOM05D001993 ORTHO05D014738 6.0e-25 117.9 114 50.9
FAN23G0437 Fragaria x ananassa HOM05D001993 ORTHO05D004040 6.0e-25 117.9 96 61.5
AL1G50860 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 7.9e-25 117.5 105 60.0
Duzib235G0702 Durio zibethinus HOM05D001993 ORTHO05D004040 7.9e-25 117.5 113 55.8
Thhalv10013695m.g Eutrema salsugineum HOM05D001993 ORTHO05D004040 7.9e-25 117.5 105 60.0
Thecc.06G035700 Theobroma cacao HOM05D001993 ORTHO05D004040 7.9e-25 117.5 113 56.6
COL.COLO4_10077 Corchorus olitorius HOM05D001993 ORTHO05D004040 1.3e-24 116.7 113 52.2
Sp6g29830 Schrenkiella parvula HOM05D001993 ORTHO05D004040 1.3e-24 116.7 88 65.9
SpUn0049_0030 Schrenkiella parvula HOM05D001993 ORTHO05D004040 1.3e-24 116.7 88 65.9
BolC6t40408H Brassica oleracea HOM05D001993 ORTHO05D004040 1.8e-24 116.3 111 54.1
Cc11_g03270 Coffea canephora HOM05D001993 ORTHO05D004040 1.8e-24 116.3 92 65.2
Migut.I00729 Erythranthe guttata HOM05D001993 ORTHO05D004040 1.8e-24 116.3 88 63.6
Sed0006349 Sechium edule HOM05D001993 ORTHO05D004040 1.8e-24 116.3 87 64.4
TAR636G1963 Trochodendron aralioides HOM05D001993 ORTHO05D004040 1.8e-24 116.3 86 62.8
MELO3C017853.2 Cucumis melo HOM05D001993 ORTHO05D004040 2.3e-24 115.9 87 63.2
Lalb_Chr14g0373941 Lupinus albus HOM05D001993 ORTHO05D004040 3.0e-24 115.5 101 59.4
Sed0011728 Sechium edule HOM05D001993 ORTHO05D004040 3.0e-24 115.5 103 57.3
ClCG07G012340 Citrullus lanatus HOM05D001993 ORTHO05D004040 3.9e-24 115.2 87 64.4
CsaV3_4G001800 Cucumis sativus L. HOM05D001993 ORTHO05D004040 3.9e-24 115.2 117 51.3
DCAR_021360 Daucus carota HOM05D001993 ORTHO05D004040 3.9e-24 115.2 91 61.5
HPP92_009455 Vanilla planifolia HOM05D001993 ORTHO05D004040 3.9e-24 115.2 93 59.1
CANSAT78G2160 Cannabis sativa HOM05D001993 ORTHO05D004040 6.7e-24 114.4 88 63.6
FvH4_2g04971 Fragaria vesca HOM05D001993 ORTHO05D004040 6.7e-24 114.4 98 60.2
HanXRQChr06g0181061 Helianthus annuus HOM05D001993 ORTHO05D004040 8.7e-24 114.0 90 63.3
Lj1A617G82 Lonicera japonica HOM05D001993 ORTHO05D004040 8.7e-24 114.0 88 61.4
TAR625G0460 Trochodendron aralioides HOM05D001993 ORTHO05D004040 8.7e-24 114.0 86 64.0
FAN24G0510 Fragaria x ananassa HOM05D001993 ORTHO05D014738 1.1e-23 113.6 95 62.1
PSO541G0229 Papaver somniferum HOM05D001993 ORTHO05D004040 1.1e-23 113.6 87 63.2
PSO675G4738 Papaver somniferum HOM05D001993 ORTHO05D004040 1.1e-23 113.6 104 54.8
TAR636G1834 Trochodendron aralioides HOM05D001993 ORTHO05D004040 1.1e-23 113.6 86 62.8
SGA_v2.0_scaffold37G14738 Striga asiatica HOM05D001993 ORTHO05D004040 1.9e-23 112.8 86 64.0
Actinidia25437 Actinidia chinensis HOM05D001993 ORTHO05D014738 2.5e-23 112.5 102 56.9
Lalb_Chr24g0395371 Lupinus albus HOM05D001993 ORTHO05D004040 2.5e-23 112.5 101 57.4
Oeu055805.1 Olea europaea HOM05D001993 ORTHO05D004040 2.5e-23 112.5 88 61.4
PSO478G5069 Papaver somniferum HOM05D001993 ORTHO05D004040 2.5e-23 112.5 97 58.8
Ah.01g004830 Amaranthus hybridus HOM05D001993 ORTHO05D004040 3.3e-23 112.1 92 59.8
unitig_62.g23356 Utricularia gibba HOM05D001993 ORTHO05D004040 4.3e-23 111.7 105 55.2
CAN.G610.41 Capsicum annuum HOM05D001993 ORTHO05D004040 5.6e-23 111.3 86 64.0
Lj3g0004208 Lotus japonicus HOM05D001993 ORTHO05D004040 5.6e-23 111.3 86 65.1
BcaC03g15953 Brassica carinata HOM05D001993 ORTHO05D004040 7.4e-23 110.9 79 64.6
Solyc05g009030.4 Solanum lycopersicum HOM05D001993 ORTHO05D004040 7.4e-23 110.9 86 61.6
Sopen05g004770 Solanum pennellii HOM05D001993 ORTHO05D004040 7.4e-23 110.9 86 61.6
AUR62011462 Chenopodium quinoa HOM05D001993 ORTHO05D004040 1.3e-22 110.2 89 61.8
Lsat_1_v5_gn_8_105360 Lactuca sativa HOM05D001993 ORTHO05D004040 1.3e-22 110.2 99 59.6
PGSC0003DMG400030577 Solanum tuberosum HOM05D001993 ORTHO05D004040 1.6e-22 109.8 86 61.6
VMungo1080G0486 Vigna mungo HOM05D001993 ORTHO05D004040 1.6e-22 109.8 96 65.6
Nitab4.5_0000315g0220 Nicotiana tabacum HOM05D001993 ORTHO05D004040 2.1e-22 109.4 88 61.4
Aa31LG4G830 Aethionema arabicum HOM05D001993 ORTHO05D004040 2.8e-22 109.0 110 49.1
Aa31LG4G840 Aethionema arabicum HOM05D002499 ORTHO05D004040 2.8e-22 109.0 110 49.1
CDE02G2027 Ceratophyllum demersum HOM05D001993 ORTHO05D004040 2.8e-22 109.0 111 50.5
Nitab4.5_0002481g0070 Nicotiana tabacum HOM05D001993 ORTHO05D004040 2.8e-22 109.0 88 60.2
EL10Ac9g21856 Beta vulgaris HOM05D001993 ORTHO05D004040 3.7e-22 108.6 88 61.4
AUR62016593 Chenopodium quinoa HOM05D001993 ORTHO05D004040 3.7e-22 108.6 88 60.2
MBI02_g44629_MAGBIO Magnolia biondii HOM05D001993 ORTHO05D004040 3.7e-22 108.6 105 54.3
Phvul.005G181600 Phaseolus vulgaris HOM05D001993 ORTHO05D004040 6.2e-22 107.8 97 59.8
arahy.Tifrunner.gnm1.ann1.MFGQ7M Arachis hypogaea HOM05D001993 ORTHO05D004040 1.1e-21 107.1 106 54.7
arahy.Tifrunner.gnm1.ann1.S9NP0T Arachis hypogaea HOM05D001993 ORTHO05D004040 1.1e-21 107.1 106 54.7
Psat5g304040 Pisum sativum HOM05D001993 ORTHO05D004040 1.1e-21 107.1 105 55.2
SalBow7G1960 Salvia bowleyana HOM05D001993 ORTHO05D004040 1.1e-21 107.1 88 59.1
Medtr2g104610 Medicago truncatula HOM05D001993 ORTHO05D004040 3.1e-21 105.5 102 55.9
arahy.Tifrunner.gnm1.ann1.9XJ6IP Arachis hypogaea HOM05D001993 ORTHO05D004040 4.0e-21 105.1 106 53.8
ECA240G4532 Erigeron canadensis HOM05D001993 ORTHO05D004040 5.3e-21 104.8 91 60.4
Glyma.11G079000 Glycine max HOM05D001993 ORTHO05D004040 6.9e-21 104.4 86 60.5
Glyma.13G367900 Glycine max HOM05D001993 ORTHO05D004040 6.9e-21 104.4 86 60.5
Hund00508 Selenicereus undatus HOM05D001993 ORTHO05D004040 9.0e-21 104.0 95 56.8
Ca_01033_v3 Cicer arietinum L. HOM05D001993 ORTHO05D004040 1.2e-20 103.6 107 54.2
Ca_30253_v3 Cicer arietinum L. HOM05D001993 ORTHO05D004040 1.2e-20 103.6 107 54.2
Os03g0655700 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D004040 1.2e-20 103.6 91 54.9
Peaxi162Scf00045g02262 Petunia axillaris HOM05D001993 ORTHO05D004040 1.5e-20 103.2 90 56.7
TPR.G19151 Trifolium pratense HOM05D001993 ORTHO05D004040 2.0e-20 102.8 95 55.8
Glyma.15G005400 Glycine max HOM05D001993 ORTHO05D004040 5.8e-20 101.3 90 56.7
ECA232G4796 Erigeron canadensis HOM05D001993 ORTHO05D004040 1.3e-19 100.1 106 50.9
TPR.G16048 Trifolium pratense HOM05D001993 ORTHO05D004040 2.2e-19 99.4 91 56.0
Zm00001eb076030 Zea mays HOM05D001993 ORTHO05D004040 2.2e-19 99.4 89 57.3
Zm00001eb434270 Zea mays HOM05D001993 ORTHO05D004040 8.4e-19 97.4 85 57.6
AagrBONN_evm.TU.Sc2ySwM_228.2916 Anthoceros agrestis HOM05D001993 ORTHO05D004040 1.1e-18 97.1 94 54.3
arahy.Tifrunner.gnm1.ann1.WS718B Arachis hypogaea HOM05D001993 ORTHO05D014738 1.4e-18 96.7 75 61.3
Pp3c22_9260 Physcomitrium patens HOM05D001993 ORTHO05D004040 1.9e-18 96.3 101 50.5
Hund00491 Selenicereus undatus HOM05D001993 ORTHO05D014738 5.5e-18 94.7 76 59.2
ATR0165G046 Amborella trichopoda HOM05D001993 ORTHO05D004040 2.7e-17 92.4 83 55.4
SMO201G0043 Selaginella moellendorffii HOM05D001993 ORTHO05D004040 2.7e-17 92.4 103 48.5
BolC3t19674H Brassica oleracea HOM05D001993 ORTHO05D017704 3.5e-17 92.0 68 66.2
Mapoly0001s0386 Marchantia polymorpha HOM05D001993 ORTHO05D004040 3.0e-16 89.0 91 49.5
C03p73820 Brassica napus HOM05D001993 ORTHO05D017704 3.9e-16 88.6 68 64.7
BolC9t54083H Brassica oleracea HOM05D001993 ORTHO05D014738 2.5e-15 85.9 65 67.7
Cre07.g325400 Chlamydomonas reinhardtii HOM05D001993 ORTHO05D004040 9.6e-15 84.0 107 43.0
MCO12G388 Micromonas commoda HOM05D001993 ORTHO05D004040 1.3e-14 83.6 77 51.9
arahy.Tifrunner.gnm1.ann1.G3W1SC Arachis hypogaea HOM05D001993 ORTHO05D004040 2.1e-14 82.8 106 44.3
CBR_g24441 Chara braunii HOM05D001993 ORTHO05D004040 1.1e-13 80.5 90 43.3
BcaC01g01608 Brassica carinata HOM05D009193 ORTHO05D027771 3.1e-13 79.0 50 70.0
Ca_01036_v3 Cicer arietinum L. HOM05D001993 ORTHO05D014738 4.1e-13 78.6 73 52.1
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 5.3e-13 78.2 102 40.2
PRCOL_00006259 Prasinoderma coloniale HOM05D001993 ORTHO05D004040 1.0e-11 73.9 78 47.4
Lalb_Chr22g0350741 Lupinus albus HOM05D001993 ORTHO05D014738 2.9e-11 72.4 81 48.1
SEGI_15241 Sequoiadendron giganteum HOM05D001993 ORTHO05D004040 6.1e-09 64.7 44 61.4
PSO017G5288 Papaver somniferum HOM05D001993 ORTHO05D004040 1.5e-07 60.1 37 73.0
Actinidia03218 Actinidia chinensis HOM05D001993 ORTHO05D017206 5.7e-07 58.2 35 74.3
BcaNung04497 Brassica carinata HOM05D001993 ORTHO05D014738 3.7e-06 55.5 34 73.5
BcaNung04500 Brassica carinata HOM05D001993 ORTHO05D014738 3.7e-06 55.5 34 73.5
BcaNung04502 Brassica carinata HOM05D001993 ORTHO05D014738 3.7e-06 55.5 34 73.5
FAN20G0035 Fragaria x ananassa HOM05D001993 ORTHO05D004040 6.3e-06 54.7 37 67.6


User provided reference genes

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