Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 0.0e+00 1679.5 957 100.0
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 0.0e+00 1562.4 962 92.7
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 0.0e+00 1467.6 962 87.7
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 0.0e+00 1430.2 971 86.0
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 0.0e+00 1405.6 957 86.3
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 0.0e+00 1401.3 962 86.2
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 0.0e+00 1350.5 961 83.1
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 0.0e+00 1341.3 965 82.8
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 0.0e+00 1335.9 990 79.8
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 0.0e+00 1332.0 967 82.8
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 0.0e+00 1313.5 963 82.0
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 0.0e+00 1200.3 965 73.9
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 1.8e-304 1049.3 973 67.8
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 3.8e-294 1015.0 974 65.2
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 5.0e-294 1014.6 1041 61.6
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 5.9e-287 991.1 978 63.0
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 2.2e-286 989.2 1002 61.9
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 1.1e-285 986.9 977 63.3
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 1.1e-285 986.9 971 64.2
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 9.4e-285 983.8 990 62.0
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 1.2e-284 983.4 980 63.8
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 1.2e-284 983.4 1005 62.4
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 2.1e-284 982.6 1039 60.5
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 2.7e-284 982.2 976 63.9
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.4e-283 979.9 1047 59.9
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 3.3e-282 975.3 1048 60.0
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 9.7e-282 973.8 971 62.8
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 1.3e-281 973.4 992 62.1
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 4.8e-281 971.5 1047 59.5
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 1.0e-278 963.8 1012 60.3
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 2.9e-278 962.2 985 61.7
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 2.9e-278 962.2 969 63.3
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 3.8e-278 961.8 983 62.0
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 6.5e-278 961.1 998 60.4
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 8.5e-278 960.7 973 62.0
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 1.9e-277 959.5 992 61.9
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 7.2e-277 957.6 987 61.3
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 1.0e-275 953.7 991 61.6
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 2.0e-274 949.5 999 60.8
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 3.4e-274 948.7 989 61.1
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 6.3e-273 944.5 975 62.4
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 8.3e-273 944.1 991 60.9
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 4.1e-272 941.8 1038 59.2
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 1.2e-271 940.3 976 62.3
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.3e-270 936.8 971 60.8
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 5.0e-270 934.9 996 59.3
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.1e-269 933.7 1027 58.7
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 3.2e-269 932.2 996 60.3
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 4.2e-269 931.8 981 60.3
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 7.2e-269 931.0 975 62.1
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.7e-268 929.1 991 60.7
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.7e-268 929.1 976 60.8
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 2.7e-268 929.1 973 60.5
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 3.6e-268 928.7 987 60.4
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 6.1e-268 927.9 986 61.4
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.0e-267 927.2 977 61.6
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 2.3e-267 926.0 968 60.5
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 3.0e-267 925.6 680 78.8
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 6.8e-267 924.5 995 60.2
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 3.4e-266 922.2 1003 59.5
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 9.8e-266 920.6 1016 59.4
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 6.3e-265 917.9 1001 59.7
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 8.3e-265 917.5 973 60.4
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 4.1e-264 915.2 989 59.6
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 5.4e-264 914.8 1016 58.1
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 2.7e-263 912.5 1019 58.4
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 1.0e-262 910.6 981 60.3
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 1.7e-262 909.8 985 59.7
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 1.7e-262 909.8 1032 56.4
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.3e-262 909.4 1066 56.8
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 4.3e-261 905.2 1037 57.9
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 9.5e-261 904.0 1043 57.5
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 9.5e-261 904.0 986 60.1
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 1.6e-260 903.3 1165 53.6
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 4.7e-260 901.7 968 59.7
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 1.4e-259 900.2 996 58.5
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 5.2e-259 898.3 1008 59.5
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 6.8e-259 897.9 993 57.9
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 1.8e-256 889.8 996 58.4
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 2.4e-256 889.4 969 58.9
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 2.0e-255 886.3 996 57.4
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 3.9e-254 882.1 1006 58.6
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 1.2e-252 877.1 965 58.8
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 1.6e-252 876.7 991 59.0
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 1.6e-252 876.7 1015 57.5
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 2.1e-252 876.3 964 59.1
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.0e-251 874.0 972 57.6
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 3.1e-251 872.5 1132 51.8
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 4.0e-251 872.1 986 58.9
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 4.9e-249 865.1 1021 56.5
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 2.7e-247 859.4 988 58.4
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 6.0e-247 858.2 1027 56.2
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 6.0e-247 858.2 1026 56.0
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 2.3e-246 856.3 994 56.9
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 1.5e-245 853.6 1024 55.2
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 3.3e-245 852.4 1152 50.6
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 7.3e-245 851.3 999 56.0
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 2.8e-244 849.4 979 57.8
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 1.1e-243 847.4 1024 55.4
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 2.3e-243 846.3 1013 55.0
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 2.0e-242 843.2 1027 54.4
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 4.9e-241 838.6 1007 55.4
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 7.1e-240 834.7 1018 54.8
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 1.1e-237 827.4 973 56.8
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 3.3e-237 825.9 1026 54.4
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 4.0e-235 818.9 1013 55.2
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 1.5e-234 817.0 958 56.9
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 3.2e-232 809.3 980 56.3
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 7.1e-232 808.1 994 54.8
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 7.8e-231 804.7 993 55.4
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 1.9e-229 800.0 973 55.6
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 7.3e-229 798.1 966 54.9
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 2.0e-226 790.0 982 54.7
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.7e-217 760.4 976 54.4
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 3.2e-216 756.1 1029 50.7
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 6.9e-211 738.4 1015 51.6
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 1.2e-207 727.6 1049 48.0
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 8.4e-201 704.9 970 51.9
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 1.4e-195 687.6 1068 46.3
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 6.3e-188 662.1 476 79.0
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 5.5e-176 622.5 881 49.8
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 3.2e-168 596.7 982 44.0
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 2.0e-165 587.4 979 44.9
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 1.1e-155 555.1 764 51.2
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 3.5e-154 550.1 542 62.9
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.3e-148 531.6 617 55.8
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 8.6e-137 492.3 809 46.0
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 5.8e-117 426.4 390 64.1
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 1.9e-104 384.8 1020 35.0
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 5.7e-72 276.9 244 71.7
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 7.2e-67 260.0 463 42.8
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 4.7e-66 257.3 507 41.4
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 9.4e-59 233.0 331 50.8
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 8.0e-58 229.9 315 53.7
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 2.2e-52 211.8 137 88.3
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 4.2e-51 207.6 158 77.2
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 1.8e-46 192.2 313 44.4
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 5.3e-46 190.7 189 59.3
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 5.0e-44 184.1 669 31.5
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 4.0e-41 174.5 242 50.0
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 3.1e-38 164.9 380 37.9
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 3.8e-36 157.9 355 36.3
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 1.0e-33 149.8 120 75.8
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 2.6e-32 145.2 90 90.0
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 2.8e-31 141.7 160 59.4
CARHR292050 Cardamine hirsuta HOM05D003521 ORTHO05D000476 5.4e-30 137.5 112 74.1
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 7.8e-29 133.7 503 30.4
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 1.3e-28 132.9 88 79.5
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 5.0e-28 131.0 83 85.5
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 1.0e-25 123.2 419 29.8
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 1.0e-25 123.2 111 65.8
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.4e-25 122.9 91 74.7
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 1.8e-25 122.5 677 26.3
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.5e-24 119.4 97 77.3
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 1.5e-24 119.4 565 28.3
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 3.4e-24 118.2 442 29.6
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 5.8e-24 117.5 382 33.0
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 7.5e-24 117.1 101 60.4
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.9e-23 115.2 101 66.3
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 8.3e-23 113.6 75 86.7
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 1.1e-22 113.2 99 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 2.0e-21 109.0 352 30.1
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 3.5e-21 108.2 130 58.5
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.7e-20 105.9 635 24.3
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 2.3e-20 105.5 84 70.2
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.5e-19 102.1 89 66.3
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 7.3e-19 100.5 63 81.0
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 2.1e-18 99.0 75 78.7
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 1.4e-17 96.3 80 68.8
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 1.8e-17 95.9 228 39.9
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 2.2e-15 89.0 60 83.3
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 2.4e-14 85.5 73 69.9
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 7.0e-14 84.0 74 64.9
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 6.6e-12 77.4 65 66.2
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 6.6e-12 77.4 65 66.2
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 6.6e-12 77.4 211 37.9
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 1.5e-11 76.3 78 61.5
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.1e-09 70.1 174 37.4
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 4.0e-09 68.2 45 82.2
Ca_25011_v3 Cicer arietinum L. HOM05D010632 ORTHO05D000013 1.3e-07 63.2 69 59.4
MBI19_g34543_MAGBIO Magnolia biondii HOM05D003521 ORTHO05D000476 1.1e-06 60.1 47 66.0
AagrBONN_evm.TU.Sc2ySwM_344.1929 Anthoceros agrestis HOM05D003521 ORTHO05D000476 3.2e-06 58.5 127 40.2
Cfa026401 Carpinus fangiana HOM05D003521 ORTHO05D000476 4.1e-06 58.2 665 24.7


User provided reference genes

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