Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 4697.9 2402 100.0
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 3210.6 2526 70.0
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 3164.4 2606 67.8
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 3158.6 2558 68.5
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 3011.9 2508 67.3
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 2992.6 2556 65.6
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 2976.4 2594 64.8
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 2960.6 2391 68.6
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 2955.6 2563 65.2
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 2941.4 2539 64.4
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 2936.0 2598 64.3
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 2915.6 2513 65.5
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 2887.1 2157 73.2
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 2828.5 2511 64.8
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 2631.7 2180 67.0
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 2397.1 2541 54.5
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 2010.3 2425 51.6
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 1803.1 2600 43.1
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 1676.4 2599 40.8
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 1676.0 2597 41.4
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1621.3 2610 40.0
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1616.7 2591 40.2
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 1616.3 2605 40.2
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1615.9 2602 40.1
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 1596.3 2582 40.0
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1592.4 2600 39.7
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1581.2 2601 38.7
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1569.3 2591 39.6
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1551.2 2593 38.6
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1546.6 2592 38.8
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1539.6 2589 38.5
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 1536.2 2622 39.0
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1498.4 2568 38.2
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1489.2 2239 41.9
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1488.8 2568 37.7
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1483.8 2423 40.4
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1483.0 2582 38.1
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 0.0e+00 1451.0 1060 73.4
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1449.5 2635 37.4
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1436.0 2636 37.8
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1426.0 2706 37.2
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1419.1 2644 36.9
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1416.0 2581 37.6
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1415.2 2501 37.3
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1414.1 2603 37.0
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1412.9 2412 38.2
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1389.8 2428 37.9
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1389.0 2573 36.5
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1387.9 2593 35.9
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1364.0 2591 37.6
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1339.7 2589 35.8
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1338.9 2599 35.4
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1332.8 2586 35.0
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1302.3 2571 34.8
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1302.0 2556 35.2
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1301.2 2594 34.9
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1300.4 2581 35.4
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1299.6 2584 35.5
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1298.5 2574 35.4
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1292.7 2624 34.3
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1286.6 2577 35.2
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1286.2 2640 34.7
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1284.6 2366 36.4
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1283.1 2595 34.6
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1282.3 2552 36.2
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1281.2 2579 34.3
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1280.4 2588 35.0
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1276.9 2622 35.5
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1273.5 2593 35.0
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1273.5 2576 35.3
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1266.9 2579 35.2
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1266.1 2464 36.4
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1262.3 2668 34.6
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1262.3 2615 35.0
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1243.0 2670 34.4
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1236.9 2593 34.3
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1233.4 2622 34.3
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1225.7 2526 34.8
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1203.3 2663 33.3
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1199.1 2662 32.9
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1196.8 2494 34.8
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1187.2 2576 33.7
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1174.8 2474 34.1
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1159.4 2746 32.6
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1146.3 2537 33.9
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1128.2 1801 40.2
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 0.0e+00 1124.0 894 69.0
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1097.4 2313 33.7
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 1.5e-307 1060.8 2122 35.6
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.9e-306 1056.6 1753 39.6
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 9.2e-305 1051.6 2637 31.2
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 1.9e-281 974.2 2031 34.9
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 4.3e-278 963.0 2301 32.7
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 7.9e-272 942.2 560 88.0
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 3.3e-270 936.8 2318 31.1
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 6.2e-269 932.6 1832 35.0
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 4.6e-264 916.4 1831 35.3
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 2.9e-250 870.5 2103 32.0
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 2.5e-249 867.5 1788 34.5
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 9.8e-214 749.2 1070 45.6
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 8.6e-186 656.4 1713 31.6
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 3.8e-181 641.0 908 44.7
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.8e-181 641.0 484 71.9
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 3.1e-167 594.7 809 45.0
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 2.3e-154 552.0 2699 25.3
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.8e-138 499.2 630 47.6
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.1e-135 488.4 1153 32.8
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 6.9e-135 487.3 2448 24.6
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 2.2e-133 482.3 2699 23.9
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 3.2e-132 478.4 598 47.3
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 7.4e-129 467.2 434 61.5
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 2.6e-121 442.2 2400 23.7
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 5.7e-121 441.0 573 46.8
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 8.0e-115 420.6 2749 22.4
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 6.3e-112 411.0 586 43.2
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 7.7e-110 404.1 601 42.8
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.9e-109 402.1 349 64.2
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.5e-108 399.8 903 33.3
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.0e-106 393.7 333 68.8
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.4e-106 393.3 1100 30.2
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 5.9e-102 377.9 326 63.5
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.7e-96 359.8 1122 28.5
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 9.5e-92 344.0 518 39.6
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.1e-87 330.5 395 47.6
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.4e-79 303.5 638 36.5
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.0e-77 297.4 687 32.5
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.4e-71 276.2 476 37.2
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 3.5e-62 245.7 290 50.0
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.1e-59 236.5 386 38.3
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 1.8e-45 190.3 454 30.6
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 3.3e-44 186.0 183 52.5
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 9.0e-42 177.9 340 32.6
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.1e-35 156.8 157 52.2
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 8.2e-35 154.8 231 39.4
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 1.3e-32 147.5 180 50.6
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 6.5e-32 145.2 346 31.2
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 4.3e-28 132.5 132 48.5
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 6.3e-27 128.6 122 52.5
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 2.4e-26 126.7 155 43.9
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 3.9e-21 109.4 252 35.3
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 3.9e-21 109.4 343 30.0
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 9.7e-20 104.8 278 25.9
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 9.1e-18 98.2 213 36.2
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 4.2e-15 89.4 335 25.1
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 4.2e-15 89.4 335 25.1
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 7.2e-15 88.6 79 53.2
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.3e-13 83.6 159 32.1
BraA10t45354Z Brassica rapa HOM05D003876 ORTHO05D043045 3.0e-13 83.2 121 47.9
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 3.9e-13 82.8 97 44.3
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 8.8e-13 81.6 142 32.4
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 3.3e-12 79.7 72 54.2
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 2.8e-11 76.6 94 44.7
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 6.3e-11 75.5 218 30.3
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.8e-10 73.9 60 65.0
C03p92150 Brassica napus HOM05D001133 ORTHO05D000941 5.3e-10 72.4 54 66.7
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 1.2e-09 71.2 345 23.8
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.5e-09 70.9 114 39.5
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.7e-09 68.6 413 24.2
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 1.0e-08 68.2 73 47.9
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.2e-07 63.2 139 30.9
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 4.7e-06 59.3 142 34.5


User provided reference genes

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