Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 0.0e+00 1219.9 652 100.0
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.2e-291 1006.1 667 84.3
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 2.1e-275 952.2 665 81.7
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 5.1e-266 921.0 669 77.4
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 2.5e-265 918.7 670 76.7
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 1.8e-263 912.5 671 76.9
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 1.8e-263 912.5 671 76.9
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 1.8e-263 912.5 671 76.9
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 4.5e-262 907.9 667 76.9
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 4.9e-261 904.4 672 76.6
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 8.2e-256 887.1 666 75.1
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 6.7e-250 867.5 671 74.1
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 5.7e-249 864.4 668 72.8
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 1.0e-245 853.6 668 73.1
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 2.2e-232 809.3 680 68.2
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 1.7e-224 783.1 574 75.8
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 6.5e-221 771.2 665 70.2
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 5.7e-217 758.1 658 64.1
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 5.9e-214 748.0 645 63.7
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 1.5e-212 743.4 678 61.5
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 2.5e-212 742.7 675 62.5
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 1.6e-211 740.0 640 63.4
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 4.7e-211 738.4 641 64.0
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 1.0e-210 737.3 533 78.6
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 1.4e-210 736.9 643 63.3
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 2.3e-210 736.1 643 63.1
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.0e-210 735.7 671 61.4
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 1.5e-209 733.4 632 62.7
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 4.4e-209 731.9 676 60.8
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.4e-207 726.9 664 61.7
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 4.1e-207 725.3 664 65.2
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 5.9e-206 721.5 677 60.7
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 7.7e-206 721.1 664 61.6
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 2.9e-205 719.2 639 62.6
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 5.0e-205 718.4 690 60.1
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 8.6e-205 717.6 635 61.7
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 4.2e-204 715.3 659 62.1
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 4.2e-204 715.3 663 60.5
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 5.6e-204 714.9 635 61.6
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 3.6e-203 712.2 665 61.2
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 3.6e-203 712.2 681 59.3
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 2.0e-201 706.4 648 58.5
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 2.0e-201 706.4 674 59.1
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 3.4e-201 705.7 666 60.2
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 5.7e-201 704.9 645 61.7
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 9.8e-201 704.1 658 60.0
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 1.3e-200 703.7 643 61.6
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 1.7e-200 703.4 668 59.9
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 2.2e-200 703.0 637 60.6
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 6.4e-200 701.4 682 59.2
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.4e-199 699.5 697 56.4
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 4.1e-199 698.7 674 57.9
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 7.0e-199 698.0 678 58.6
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 9.2e-199 697.6 671 59.0
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 2.0e-198 696.4 672 57.4
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 2.0e-198 696.4 636 59.1
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.3e-197 693.7 678 58.3
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 2.9e-197 692.6 678 58.6
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 3.9e-197 692.2 679 58.2
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 5.0e-197 691.8 630 60.6
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 5.0e-197 691.8 670 59.1
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 5.0e-197 691.8 692 57.8
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 6.6e-197 691.4 677 57.9
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 6.6e-197 691.4 637 57.6
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 8.6e-197 691.0 684 57.5
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 1.5e-196 690.3 663 57.5
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 3.3e-196 689.1 643 58.8
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 3.3e-196 689.1 678 58.6
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 9.5e-196 687.6 671 58.4
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 1.6e-195 686.8 634 59.5
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 4.7e-195 685.3 683 57.5
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 8.0e-195 684.5 659 59.0
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.8e-194 683.3 667 57.0
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 1.8e-194 683.3 670 56.6
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.3e-194 682.9 672 59.5
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 2.3e-194 682.9 681 58.0
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 2.3e-194 682.9 692 57.4
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.1e-194 682.6 657 59.7
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 3.1e-194 682.6 672 59.4
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 3.1e-194 682.6 671 59.8
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 6.8e-194 681.4 654 57.8
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.5e-193 680.2 672 59.2
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 3.4e-193 679.1 682 57.5
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 7.5e-193 677.9 671 59.5
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 2.9e-192 676.0 679 57.4
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 8.3e-192 674.5 672 58.9
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 1.9e-191 673.3 679 56.7
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.9e-191 673.3 656 59.6
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 2.0e-190 669.8 679 56.1
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.3e-189 667.2 671 57.2
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 3.9e-189 665.6 639 57.4
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 1.5e-188 663.7 612 60.0
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.5e-188 663.7 672 54.9
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 1.2e-187 660.6 648 62.8
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.6e-187 660.2 675 56.9
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.1e-187 659.8 681 56.4
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 2.1e-187 659.8 670 55.5
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 5.2e-186 655.2 685 55.8
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 1.5e-185 653.7 573 63.9
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 8.3e-184 647.9 710 53.9
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 3.5e-182 642.5 759 51.9
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 3.6e-179 632.5 670 55.7
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.6e-179 632.5 540 63.9
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 3.1e-178 629.4 690 54.1
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 2.6e-177 626.3 554 58.5
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 3.7e-176 622.5 676 54.4
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 9.2e-175 617.8 661 55.2
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 6.6e-173 611.7 515 63.7
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 4.7e-171 605.5 637 54.3
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 6.2e-171 605.1 667 52.9
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 1.1e-167 594.3 458 72.3
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 6.0e-166 588.6 683 52.0
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 3.9e-165 585.9 682 50.9
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 4.8e-163 578.9 655 53.6
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 5.8e-161 572.0 552 59.2
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.3e-157 560.8 632 53.6
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 2.6e-153 546.6 513 59.1
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 5.8e-153 545.4 492 60.4
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 2.4e-151 540.0 507 59.4
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 3.5e-142 509.6 416 69.2
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 1.8e-133 480.7 647 51.2
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 3.9e-133 479.6 458 59.2
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 1.1e-132 478.0 654 44.8
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 8.2e-131 471.9 495 56.4
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 5.3e-130 469.2 449 59.2
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 5.9e-129 465.7 664 45.6
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 1.7e-128 464.2 555 50.8
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 3.2e-127 459.9 669 44.4
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 4.3e-124 449.5 445 59.6
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 8.2e-107 392.1 640 41.2
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 1.1e-106 391.7 357 58.0
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 1.2e-97 361.7 645 38.1
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 7.2e-95 352.4 339 59.3
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 9.2e-82 308.9 341 53.4
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 8.9e-69 265.8 215 67.4
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 8.1e-62 242.7 224 60.3
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 9.9e-60 235.7 699 33.2
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 9.9e-60 235.7 188 64.4
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 1.4e-58 231.9 325 47.4
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.3e-51 208.8 222 54.5
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.1e-50 205.7 239 52.7
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.4e-50 205.3 201 55.7
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 3.9e-48 197.2 759 29.2
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 8.7e-48 196.1 179 62.6
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.9e-45 186.4 170 63.5
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.4e-42 177.9 175 53.7
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 2.5e-39 167.9 655 28.2
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 5.8e-36 156.8 170 55.3
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.2e-35 154.8 180 50.0
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 8.4e-35 152.9 148 52.0
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 8.4e-35 152.9 148 52.7
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 1.6e-33 148.7 180 47.8
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.3e-30 139.0 127 56.7
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 1.1e-29 136.0 116 57.8
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 9.0e-29 132.9 137 53.3
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 4.6e-25 120.6 115 70.4
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 6.7e-24 116.7 143 48.3
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 1.1e-23 115.9 118 55.1
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 1.9e-23 115.2 179 39.7
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 4.3e-23 114.0 107 69.2
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 9.0e-21 106.3 99 60.6
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 6.5e-19 100.1 92 56.5
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 6.5e-19 100.1 92 56.5
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 6.5e-19 100.1 92 56.5
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 7.2e-18 96.7 90 57.8
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 6.7e-16 90.1 101 48.5
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 2.2e-14 85.1 89 62.9
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.2e-14 85.1 104 46.2
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.4e-13 82.4 101 46.5
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.4e-13 81.6 148 43.9
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.5e-12 77.4 90 48.9
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 1.9e-10 72.0 107 38.3
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 5.5e-10 70.5 92 44.6
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.2e-09 69.3 50 64.0
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 6.1e-09 67.0 82 43.9
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.3e-08 65.1 58 56.9
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 6.7e-08 63.5 636 23.7


User provided reference genes

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