Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 0.0e+00 1130.2 597 100.0
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 0.0e+00 1075.8 600 94.7
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.7e-290 1001.5 607 87.5
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.1e-288 996.1 602 88.0
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 4.6e-282 974.2 601 86.2
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 3.5e-269 931.4 636 79.7
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 4.5e-269 931.0 604 82.6
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 3.2e-267 924.9 603 82.4
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 5.5e-267 924.1 603 82.4
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 9.4e-267 923.3 547 89.6
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 1.2e-266 922.9 603 82.3
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 2.3e-265 918.7 601 81.9
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 1.4e-254 882.9 612 78.4
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 6.2e-226 787.7 613 70.5
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.1e-217 760.4 613 68.2
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 8.9e-217 757.3 613 68.0
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.2e-213 746.9 614 68.7
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 6.0e-213 744.6 614 67.6
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 7.8e-213 744.2 615 66.7
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 6.6e-212 741.1 616 66.4
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 6.6e-212 741.1 617 65.2
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 3.3e-211 738.8 614 65.5
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 1.6e-210 736.5 604 66.1
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 1.5e-208 729.9 629 64.1
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 4.4e-208 728.4 626 65.2
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 7.6e-208 727.6 626 64.7
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 1.7e-207 726.5 626 66.3
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 2.2e-207 726.1 629 64.2
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 3.8e-207 725.3 615 65.0
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 4.9e-207 724.9 619 64.9
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.0e-204 717.2 625 64.8
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.3e-204 716.1 619 64.0
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 2.3e-204 716.1 626 63.9
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 5.1e-204 714.9 624 64.4
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 1.5e-203 713.4 609 65.7
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 1.9e-203 713.0 613 63.3
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 2.8e-202 709.1 635 63.0
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.0e-201 705.3 613 63.9
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 6.9e-201 704.5 619 64.8
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.5e-200 703.4 605 64.5
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 2.0e-200 703.0 618 65.5
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 7.6e-200 701.0 620 63.1
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 9.9e-200 700.7 654 61.9
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 1.3e-199 700.3 615 63.7
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 3.8e-199 698.7 624 64.1
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 4.9e-199 698.4 618 64.6
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 4.6e-197 691.8 618 64.2
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 6.0e-197 691.4 627 61.6
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 2.3e-196 689.5 619 61.9
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 3.0e-196 689.1 615 63.1
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 8.7e-196 687.6 655 59.4
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 1.5e-195 686.8 610 63.6
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 1.9e-195 686.4 607 62.8
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 2.5e-195 686.0 614 62.7
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 9.6e-195 684.1 610 63.1
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 2.1e-194 682.9 613 62.5
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 2.8e-194 682.6 627 63.2
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 4.8e-194 681.8 616 63.3
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 1.8e-193 679.9 617 62.9
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 5.3e-193 678.3 614 63.7
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 2.0e-192 676.4 619 61.1
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 2.6e-192 676.0 640 61.7
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 1.6e-189 666.8 591 63.3
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 3.5e-189 665.6 618 60.7
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 3.5e-189 665.6 614 60.4
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 7.4e-187 657.9 617 60.1
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 7.4e-187 657.9 636 60.7
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 1.6e-186 656.8 619 60.7
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 2.8e-186 656.0 616 60.4
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 6.2e-186 654.8 606 65.0
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 6.2e-186 654.8 616 59.9
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 8.2e-186 654.4 600 61.5
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 2.0e-184 649.8 621 61.2
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.0e-183 647.5 613 60.0
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 1.3e-183 647.1 654 57.0
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 4.9e-183 645.2 624 59.6
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 6.5e-183 644.8 617 59.2
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.4e-182 643.7 648 57.7
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 2.5e-182 642.9 634 58.5
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 1.2e-181 640.6 632 58.5
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 2.1e-181 639.8 630 59.5
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 1.5e-179 633.6 489 68.1
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 1.6e-178 630.2 609 59.3
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 2.2e-178 629.8 606 58.6
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 1.8e-177 626.7 553 62.9
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.0e-175 620.9 625 57.4
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 1.7e-175 620.2 566 61.5
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 6.1e-173 611.7 629 56.6
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.0e-172 610.9 594 58.9
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 2.3e-172 609.8 562 61.2
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.3e-170 604.0 619 58.6
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 1.5e-168 597.0 615 57.2
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 1.5e-168 597.0 604 57.5
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 3.8e-167 592.4 607 55.0
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 1.1e-166 590.9 620 56.3
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 7.9e-165 584.7 609 55.7
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.4e-164 583.9 533 63.2
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 3.9e-164 582.4 613 55.6
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 2.8e-162 576.2 623 55.7
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 3.4e-160 569.3 556 58.8
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 2.2e-159 566.6 334 85.9
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.1e-158 564.3 585 56.9
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 1.5e-150 537.3 526 58.9
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 1.4e-145 520.8 556 55.2
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 4.1e-145 519.2 593 54.5
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 3.0e-140 503.1 339 74.6
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 2.2e-138 496.9 516 56.6
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.0e-136 490.3 631 49.8
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.0e-136 490.3 398 65.6
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 9.5e-134 481.5 340 73.2
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 5.0e-127 459.1 607 48.3
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.2e-125 454.5 321 72.9
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.4e-124 451.1 432 58.1
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.9e-118 430.6 503 53.5
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 2.3e-116 423.7 393 61.3
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 5.2e-116 422.5 373 70.5
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 8.9e-116 421.8 503 50.1
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.2e-112 411.4 276 79.7
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 1.5e-107 394.4 646 40.9
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 1.3e-95 354.8 262 78.6
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-94 351.7 378 53.2
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 7.3e-86 322.4 486 43.0
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.6e-83 312.4 320 56.2
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 2.1e-80 304.3 687 35.5
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 9.6e-78 295.4 196 78.1
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 3.7e-77 293.5 337 57.3
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-75 288.1 365 47.7
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.9e-74 283.1 327 52.6
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 4.6e-72 276.6 221 65.2
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 1.6e-69 268.1 224 60.7
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 8.2e-61 239.2 269 53.9
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 5.9e-59 233.0 238 55.0
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 2.0e-54 218.0 648 30.1
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 5.7e-54 216.5 270 45.9
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 1.8e-52 211.5 274 51.8
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 1.8e-52 211.5 272 48.9
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 3.1e-52 210.7 264 52.3
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 5.0e-50 203.4 301 41.5
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 3.9e-47 193.7 106 88.7
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.3e-45 188.7 246 51.2
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.4e-41 175.3 149 70.5
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 3.9e-39 167.2 128 68.0
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 8.8e-39 166.0 266 42.9
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 2.6e-38 164.5 257 40.1
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.8e-37 160.2 106 73.6
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 9.4e-33 146.0 203 43.8
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.6e-32 145.2 75 97.3
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 3.6e-32 144.1 75 97.3
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 3.0e-31 141.0 81 88.9
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-30 138.7 184 45.7
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.4e-30 137.1 234 37.6
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 9.1e-28 129.4 210 47.1
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 5.9e-27 126.7 126 57.1
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 7.2e-25 119.8 385 29.1
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.1e-24 118.2 321 31.2
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.5e-22 112.1 165 50.9
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 3.4e-22 110.9 154 43.5
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 3.7e-21 107.5 324 32.4
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 8.3e-21 106.3 135 48.9
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 1.1e-20 105.9 121 49.6
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 9.1e-20 102.8 150 48.7
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.0e-19 101.7 149 47.0
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 2.0e-19 101.7 99 50.5
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 1.3e-18 99.0 254 29.1
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.5e-17 95.5 142 48.6
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 5.5e-17 93.6 77 61.0
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 1.5e-14 85.5 134 47.8
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 5.9e-11 73.6 107 43.9
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 7.3e-09 66.6 68 51.5
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 5.2e-07 60.5 47 59.6
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 6.8e-07 60.1 39 79.5
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 2.0e-06 58.5 39 76.9


User provided reference genes

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