Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 0.0e+00 1096.6 751 100.0
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 4.3e-301 1037.7 754 93.1
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 6.5e-281 970.7 756 86.1
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 1.8e-251 872.8 768 81.0
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 4.1e-251 871.7 759 82.2
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 9.1e-251 870.5 759 78.7
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 2.0e-250 869.4 756 83.2
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 5.3e-243 844.7 760 79.1
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 7.7e-242 840.9 762 80.2
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 5.5e-240 834.7 760 78.3
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 2.7e-239 832.4 759 77.3
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 8.8e-238 827.4 753 76.9
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 1.9e-232 809.7 755 78.9
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 8.3e-220 767.7 749 71.4
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 8.3e-220 767.7 749 71.4
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 8.3e-220 767.7 749 71.4
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.5e-216 756.9 783 72.8
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 5.5e-171 605.5 739 64.8
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.8e-169 600.5 745 65.1
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 2.4e-158 563.5 568 74.1
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 7.9e-146 521.9 783 54.9
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 2.3e-145 520.4 780 54.9
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 1.6e-141 507.7 780 57.2
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 6.5e-140 502.3 781 56.0
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 2.7e-138 496.9 794 55.8
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.7e-138 496.9 780 57.2
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 8.0e-138 495.4 787 54.0
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.3e-137 493.8 784 57.8
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 7.0e-134 482.3 782 54.5
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 2.0e-133 480.7 785 46.6
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 5.9e-133 479.2 762 57.3
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 1.0e-132 478.4 785 53.1
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 2.9e-132 476.9 791 55.1
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.9e-131 474.2 780 57.7
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 7.2e-131 472.2 749 55.9
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.6e-130 469.9 769 53.4
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 3.6e-130 469.9 788 56.5
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 6.1e-130 469.2 760 53.9
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 8.0e-130 468.8 782 53.1
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.0e-129 468.4 791 52.6
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 1.8e-129 467.6 776 55.8
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 2.3e-129 467.2 780 55.1
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 3.0e-129 466.8 793 55.2
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 3.0e-129 466.8 789 53.4
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 5.2e-129 466.1 792 55.1
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 8.8e-129 465.3 791 50.2
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 1.2e-128 464.9 790 54.8
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 1.5e-128 464.5 787 52.9
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 3.4e-128 463.4 776 55.4
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 2.2e-127 460.7 764 54.3
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 3.7e-127 459.9 779 51.9
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 4.8e-127 459.5 785 56.6
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 4.8e-127 459.5 773 53.9
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 1.1e-126 458.4 783 54.3
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 2.4e-126 457.2 788 51.3
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 3.1e-126 456.8 809 54.0
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.4e-126 456.1 776 53.1
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.5e-125 453.4 777 52.4
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 4.5e-125 453.0 789 54.6
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 7.7e-125 452.2 777 52.4
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 1.0e-124 451.8 758 50.5
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.7e-124 451.1 775 51.9
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 3.8e-124 449.9 769 54.9
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 3.8e-124 449.9 784 57.8
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 1.5e-123 448.0 785 47.5
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 1.5e-123 448.0 781 56.3
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.5e-123 448.0 788 56.0
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 2.1e-122 444.1 784 55.0
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 3.6e-122 443.4 801 50.4
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 1.0e-121 441.8 770 53.8
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 4.4e-120 436.4 779 55.8
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 5.7e-120 436.0 780 50.5
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 9.8e-120 435.3 789 48.0
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 2.2e-119 434.1 770 55.5
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 3.7e-119 433.3 776 53.5
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.4e-118 431.4 782 52.2
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 5.9e-117 426.0 783 56.7
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 1.0e-116 425.2 780 51.8
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.0e-116 425.2 814 49.5
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.7e-116 424.5 783 48.1
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 2.9e-116 423.7 761 48.0
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 5.0e-116 422.9 781 50.6
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 6.6e-116 422.5 786 47.3
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 6.6e-116 422.5 780 51.0
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 5.6e-115 419.5 792 46.1
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 7.3e-115 419.1 773 48.1
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 2.8e-114 417.2 785 49.9
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 2.3e-113 414.1 780 48.8
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 4.0e-113 413.3 791 49.9
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 2.0e-112 411.0 764 53.0
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 3.4e-112 410.2 782 50.9
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 7.5e-112 409.1 785 44.5
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 3.2e-110 403.7 792 54.4
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 3.2e-110 403.7 787 50.4
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 4.1e-110 403.3 777 49.7
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 2.0e-109 401.0 802 52.5
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 1.0e-108 398.7 783 52.4
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 1.3e-108 398.3 781 52.9
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 3.0e-108 397.1 792 46.3
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 5.6e-107 392.9 745 42.1
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 2.1e-106 391.0 788 50.5
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 2.8e-106 390.6 835 49.3
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 4.7e-106 389.8 792 49.4
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 8.0e-106 389.0 792 47.0
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 2.3e-105 387.5 769 49.4
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 1.5e-104 384.8 698 54.9
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 2.0e-104 384.4 773 49.5
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.2e-101 375.2 781 47.5
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 1.6e-101 374.8 743 43.3
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 1.7e-100 371.3 774 45.9
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 6.8e-97 359.4 783 45.0
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 1.6e-90 338.2 765 45.1
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 5.8e-88 329.7 759 51.9
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.2e-85 322.0 777 47.9
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 2.9e-79 300.8 700 47.3
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 5.4e-78 296.6 828 47.0
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 9.6e-75 285.8 813 43.8
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 6.2e-74 283.1 702 38.2
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.9e-71 274.2 791 42.5
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 9.3e-70 269.2 281 56.2
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 1.1e-67 262.3 798 42.6
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 3.6e-66 257.3 333 52.0
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 1.2e-64 252.3 708 41.4
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 3.3e-51 207.6 272 51.1
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.1e-50 204.9 267 51.3
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 9.0e-49 199.5 550 48.5
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.2e-48 199.1 242 55.4
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 4.5e-48 197.2 747 37.6
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-43 182.6 328 43.9
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 3.2e-38 164.5 164 56.1
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 4.2e-38 164.1 244 43.0
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 8.8e-36 156.4 292 41.1
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 6.1e-29 133.7 179 46.9
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 3.1e-25 121.3 127 58.3
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 2.0e-24 118.6 71 81.7
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.8e-23 114.4 316 33.9
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 1.9e-22 112.1 77 75.3
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 3.7e-18 97.8 93 46.2
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 3.1e-17 94.7 133 42.9
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 4.2e-14 84.3 122 43.4
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 6.1e-13 80.5 101 41.6
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 1.5e-11 75.9 137 35.8
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 4.4e-11 74.3 103 39.8
Sp6g02640 Schrenkiella parvula HOM05D004873 ORTHO05D006122 2.9e-07 61.6 127 40.2
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.1e-06 59.7 118 39.0


User provided reference genes

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