Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 9.3e-29 129.4 61 100.0
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 5.5e-13 77.0 49 65.3
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 1.0e-11 72.8 51 62.7
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 1.4e-11 72.4 45 71.1
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 1.4e-11 72.4 41 73.2
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.4e-11 72.4 41 73.2
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.4e-11 72.4 41 73.2
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 1.4e-11 72.4 41 73.2
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 1.4e-11 72.4 41 73.2
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 1.8e-11 72.0 41 78.0
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 1.8e-11 72.0 41 78.0
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 1.8e-11 72.0 41 78.0
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 1.8e-11 72.0 41 78.0
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 1.8e-11 72.0 41 78.0
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 1.8e-11 72.0 41 78.0
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 1.8e-11 72.0 41 78.0
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 1.8e-11 72.0 41 78.0
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 1.8e-11 72.0 52 67.3
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 1.8e-11 72.0 41 78.0
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 1.8e-11 72.0 41 78.0
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 1.8e-11 72.0 41 78.0
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 1.8e-11 72.0 41 78.0
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 1.8e-11 72.0 41 78.0
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 1.8e-11 72.0 41 78.0
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 3.0e-11 71.2 41 75.6
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 3.0e-11 71.2 41 75.6
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 3.0e-11 71.2 41 75.6
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 3.0e-11 71.2 41 75.6
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 3.0e-11 71.2 41 78.0
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 3.0e-11 71.2 41 75.6
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 3.0e-11 71.2 41 75.6
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 3.0e-11 71.2 41 75.6
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 3.0e-11 71.2 41 75.6
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 3.0e-11 71.2 41 75.6
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 3.0e-11 71.2 41 75.6
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 3.9e-11 70.9 41 70.7
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 3.9e-11 70.9 41 70.7
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 3.9e-11 70.9 41 75.6
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 6.7e-11 70.1 41 75.6
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 6.7e-11 70.1 41 75.6
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 6.7e-11 70.1 41 75.6
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 6.7e-11 70.1 41 75.6
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 6.7e-11 70.1 41 75.6
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 6.7e-11 70.1 41 75.6
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 6.7e-11 70.1 41 75.6
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 6.7e-11 70.1 41 75.6
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 6.7e-11 70.1 41 75.6
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 6.7e-11 70.1 41 75.6
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 6.7e-11 70.1 41 75.6
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 6.7e-11 70.1 41 75.6
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 6.7e-11 70.1 41 75.6
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 6.7e-11 70.1 41 75.6
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 6.7e-11 70.1 41 75.6
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 8.8e-11 69.7 41 75.6
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 8.8e-11 69.7 61 55.7
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 8.8e-11 69.7 49 63.3
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 8.8e-11 69.7 41 75.6
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 8.8e-11 69.7 41 75.6
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 8.8e-11 69.7 41 75.6
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 1.1e-10 69.3 39 79.5
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 1.1e-10 69.3 41 73.2
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 1.1e-10 69.3 41 75.6
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 1.1e-10 69.3 41 73.2
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 1.1e-10 69.3 41 73.2
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 1.1e-10 69.3 41 73.2
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.1e-10 69.3 41 73.2
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 1.1e-10 69.3 41 73.2
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 1.5e-10 68.9 41 75.6
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.0e-10 68.6 51 60.8
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 2.0e-10 68.6 41 73.2
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 2.0e-10 68.6 41 75.6
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 2.0e-10 68.6 41 75.6
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 2.0e-10 68.6 43 72.1
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 2.0e-10 68.6 47 66.0
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 2.0e-10 68.6 41 75.6
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 2.6e-10 68.2 41 68.3
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 2.6e-10 68.2 41 73.2
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 2.6e-10 68.2 41 73.2
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 2.6e-10 68.2 41 73.2
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 2.6e-10 68.2 41 73.2
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 2.6e-10 68.2 41 73.2
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 2.6e-10 68.2 41 73.2
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 2.6e-10 68.2 41 73.2
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 2.6e-10 68.2 41 73.2
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 2.6e-10 68.2 41 73.2
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 2.6e-10 68.2 41 73.2
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 2.6e-10 68.2 41 73.2
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 2.6e-10 68.2 41 73.2
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 2.6e-10 68.2 41 73.2
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 2.6e-10 68.2 40 75.0
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 3.3e-10 67.8 42 73.8
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 3.3e-10 67.8 41 73.2
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 3.3e-10 67.8 45 66.7
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 3.3e-10 67.8 38 71.1
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 3.3e-10 67.8 38 73.7
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 3.3e-10 67.8 41 73.2
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 4.4e-10 67.4 38 71.1
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 4.4e-10 67.4 41 73.2
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 5.7e-10 67.0 42 71.4
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 5.7e-10 67.0 47 68.1
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 5.7e-10 67.0 41 70.7
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 7.4e-10 66.6 41 73.2
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 7.4e-10 66.6 44 70.5
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 7.4e-10 66.6 38 68.4
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 9.7e-10 66.2 41 70.7
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 9.7e-10 66.2 41 73.2
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 1.3e-09 65.9 41 73.2
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 1.7e-09 65.5 38 68.4
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 1.7e-09 65.5 34 76.5
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 1.7e-09 65.5 38 68.4
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.2e-09 65.1 41 70.7
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.2e-09 65.1 41 70.7
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 2.8e-09 64.7 42 64.3
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 3.7e-09 64.3 38 68.4
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 4.8e-09 63.9 41 70.7
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 4.8e-09 63.9 41 70.7
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 6.3e-09 63.5 39 59.0
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 6.3e-09 63.5 39 59.0
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 6.3e-09 63.5 46 58.7
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 6.3e-09 63.5 32 75.0
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 6.3e-09 63.5 37 67.6
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 8.2e-09 63.2 39 69.2
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 8.2e-09 63.2 39 69.2
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 8.2e-09 63.2 41 63.4
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 8.2e-09 63.2 41 63.4
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 8.2e-09 63.2 36 72.2
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.1e-08 62.8 48 60.4
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.4e-08 62.4 42 61.9
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.4e-08 62.4 42 61.9
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 1.8e-08 62.0 41 68.3
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 1.8e-08 62.0 41 68.3
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.4e-08 61.6 39 56.4
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.4e-08 61.6 43 58.1
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.4e-08 61.6 41 65.9
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 4.1e-08 60.8 41 68.3
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 9.1e-08 59.7 41 65.9
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 9.1e-08 59.7 38 65.8
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 2.0e-07 58.5 34 67.6
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 2.6e-07 58.2 43 60.5
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 3.4e-07 57.8 36 69.4
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 4.5e-07 57.4 34 67.6
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 7.7e-07 56.6 35 65.7
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 1.0e-06 56.2 30 76.7
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 3.8e-06 54.3 41 61.0
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 8.5e-06 53.1 32 71.9


User provided reference genes

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