Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 0.0e+00 1484.9 747 100.0
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 0.0e+00 1311.2 741 90.1
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 0.0e+00 1269.6 741 86.6
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 0.0e+00 1244.6 745 84.3
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 0.0e+00 1200.3 777 80.7
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 0.0e+00 1114.0 814 74.4
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 0.0e+00 1109.7 758 78.0
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 0.0e+00 1107.4 758 78.1
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 0.0e+00 1103.6 756 77.6
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 0.0e+00 1099.3 774 76.2
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 0.0e+00 1085.1 756 74.9
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 8.4e-273 943.7 746 70.0
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 3.5e-271 938.3 776 65.2
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 2.6e-258 895.6 565 83.7
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 4.0e-222 775.4 805 54.2
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 1.2e-221 773.9 852 51.5
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 8.6e-217 757.7 723 57.1
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 1.9e-216 756.5 808 53.0
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 3.3e-216 755.7 807 53.2
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 2.1e-215 753.1 805 53.0
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 6.1e-215 751.5 772 54.5
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 3.4e-213 745.7 862 51.3
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 7.0e-211 738.0 803 52.7
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 2.7e-210 736.1 791 53.1
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.9e-208 729.9 823 49.8
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 4.3e-208 728.8 862 49.4
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 1.8e-206 723.4 817 50.4
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.3e-204 717.2 774 53.0
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.3e-204 717.2 774 52.8
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 4.9e-204 715.3 825 49.3
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 4.9e-204 715.3 816 50.7
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 6.4e-204 714.9 802 51.4
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 6.4e-204 714.9 841 48.9
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 1.7e-201 706.8 801 49.8
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.0e-201 706.1 808 50.7
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 3.9e-201 705.7 602 59.8
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 7.3e-200 701.4 601 58.4
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 1.6e-199 700.3 796 49.4
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 8.9e-198 694.5 784 49.6
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.2e-197 694.1 793 50.2
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.5e-197 693.7 777 50.3
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 2.6e-197 693.0 778 49.6
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 3.4e-197 692.6 802 48.6
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 1.9e-195 686.8 798 47.5
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 3.9e-193 679.1 760 50.3
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 1.5e-192 677.2 703 52.6
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.9e-192 676.8 815 47.9
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 5.6e-192 675.2 844 47.0
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 7.3e-192 674.9 803 48.1
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 7.3e-192 674.9 782 49.0
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 1.2e-191 674.1 826 46.2
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 2.8e-191 672.9 779 49.4
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 3.6e-191 672.5 801 48.3
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 5.8e-189 665.2 714 51.5
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.1e-187 661.0 806 49.3
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 1.6e-186 657.1 600 54.7
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 2.1e-186 656.8 624 54.8
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 1.7e-185 653.7 711 49.5
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.3e-184 649.0 770 49.6
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 7.3e-184 648.3 832 46.4
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 1.2e-183 647.5 779 47.9
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 4.7e-183 645.6 791 47.4
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 4.7e-183 645.6 844 45.6
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 6.2e-183 645.2 835 45.3
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 3.1e-182 642.9 610 54.3
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 4.0e-182 642.5 829 46.2
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 5.2e-182 642.1 824 46.2
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.2e-181 641.0 754 48.1
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 5.4e-179 632.1 708 49.2
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 7.1e-179 631.7 703 50.2
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 3.0e-177 626.3 764 48.8
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 1.1e-176 624.4 846 43.9
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.5e-176 623.2 727 50.5
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 1.1e-174 617.8 784 46.4
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.7e-172 610.5 727 47.2
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.9e-171 607.1 540 56.7
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 3.2e-171 606.3 736 48.8
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 7.8e-170 601.7 796 44.6
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 3.9e-169 599.4 842 42.8
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 4.8e-167 592.4 834 43.0
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 4.8e-167 592.4 795 43.3
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 6.2e-167 592.0 617 48.0
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 1.1e-166 591.3 848 42.7
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 1.5e-165 587.4 794 41.9
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 2.0e-165 587.0 823 45.4
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 1.4e-155 554.3 730 44.5
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.5e-155 553.5 786 42.1
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.6e-154 550.8 804 42.8
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 1.9e-147 527.3 702 43.3
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 5.5e-147 525.8 555 51.4
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 2.2e-143 513.8 638 43.9
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.1e-136 491.5 424 55.7
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 1.5e-136 491.1 629 43.9
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-132 477.2 679 41.7
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 2.5e-131 473.8 605 43.5
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.8e-129 467.6 386 60.9
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 1.0e-124 451.8 412 55.1
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.0e-124 451.8 807 38.3
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-124 451.8 755 38.7
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 2.2e-124 450.7 316 67.4
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-123 448.4 619 42.3
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.0e-117 427.6 565 42.5
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.4e-113 414.8 422 50.2
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 4.0e-113 413.3 315 66.7
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.1e-110 403.7 693 37.5
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 9.8e-104 382.1 337 56.7
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.9e-100 370.5 644 37.0
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.6e-91 339.7 315 56.5
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.8e-89 332.8 748 32.6
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-84 318.9 708 34.0
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.7e-84 318.2 337 49.0
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 6.8e-81 306.2 240 62.1
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 6.8e-81 306.2 240 62.1
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 7.8e-77 292.7 480 38.8
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 1.7e-76 291.6 851 29.8
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 3.0e-76 290.8 479 40.7
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.3e-68 265.4 437 40.3
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.6e-64 251.1 494 35.2
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 1.1e-62 245.7 170 68.2
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 1.0e-60 239.2 336 41.4
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.1e-57 227.6 657 29.5
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 1.4e-54 218.8 136 75.0
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 8.1e-50 203.0 383 37.9
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 1.9e-46 191.8 171 59.1
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 2.2e-39 168.3 257 37.7
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 2.7e-37 161.4 501 27.5
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.1e-36 157.1 143 58.0
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 6.7e-36 156.8 111 68.5
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 1.9e-35 155.2 277 31.8
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.8e-34 151.4 186 44.6
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 9.0e-33 146.4 211 42.2
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-28 132.5 539 28.8
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 1.1e-27 129.4 63 88.9
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 1.6e-26 125.6 86 66.3
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 9.0e-25 119.8 580 25.5
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 1.3e-23 115.9 73 74.0
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.2e-22 110.9 71 71.8
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 1.8e-20 105.5 122 47.5
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.1e-20 104.0 83 67.5
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 2.5e-19 101.7 79 58.2
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 2.0e-16 92.0 111 45.0
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 2.2e-15 88.6 251 33.5
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-13 82.4 49 71.4
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 3.3e-11 74.7 176 31.8
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.5e-07 60.5 71 46.5
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.2e-06 58.2 50 58.0


User provided reference genes

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