Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 1.3e-161 573.2 315 100.0
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 3.6e-148 528.5 315 88.6
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.8e-144 516.2 304 93.1
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 7.2e-141 504.2 315 86.7
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 3.5e-127 458.8 315 77.8
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 3.7e-121 438.7 335 76.4
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 5.5e-117 424.9 317 72.6
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 5.5e-117 424.9 317 72.6
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 9.5e-117 424.1 334 73.1
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 1.3e-113 413.7 335 68.7
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 3.1e-112 409.1 335 68.1
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 7.8e-111 404.4 338 66.3
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 1.9e-109 399.8 335 66.9
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 2.0e-82 310.1 324 57.4
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 2.2e-81 306.6 316 61.4
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.0e-62 244.6 308 47.4
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 5.3e-59 232.3 315 44.4
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 2.5e-53 213.4 168 60.1
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 3.3e-53 213.0 163 61.3
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 1.3e-52 211.1 175 58.3
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 6.9e-51 205.3 178 59.6
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 9.0e-51 204.9 178 57.9
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 9.0e-51 204.9 146 66.4
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 2.6e-50 203.4 291 45.7
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.5e-50 202.6 178 59.6
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.5e-50 202.6 178 59.6
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 7.6e-50 201.8 184 55.4
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 7.6e-50 201.8 160 60.6
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 1.0e-49 201.4 153 64.1
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 1.0e-49 201.4 169 57.4
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.3e-49 201.1 178 59.0
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.3e-49 201.1 178 59.0
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.3e-49 201.1 178 57.3
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 2.9e-49 199.9 293 45.7
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.9e-49 199.9 169 60.9
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 4.9e-49 199.1 179 55.9
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 6.5e-49 198.7 176 59.1
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 6.5e-49 198.7 153 59.5
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 4.2e-48 196.1 177 57.6
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 5.5e-48 195.7 163 56.4
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 9.3e-48 194.9 159 58.5
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 1.2e-47 194.5 181 54.1
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 1.6e-47 194.1 134 69.4
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 1.6e-47 194.1 169 58.0
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 1.6e-47 194.1 156 59.6
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 4.6e-47 192.6 161 57.8
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 4.6e-47 192.6 150 64.7
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 6.0e-47 192.2 177 54.2
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 7.9e-47 191.8 176 54.5
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 7.9e-47 191.8 175 54.3
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 1.3e-46 191.0 166 57.2
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 2.3e-46 190.3 164 56.7
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.0e-46 189.9 177 53.7
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.0e-46 189.9 177 53.7
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 3.0e-46 189.9 169 53.8
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 5.1e-46 189.1 159 57.9
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 5.1e-46 189.1 166 57.2
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.9e-45 187.2 178 56.7
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 2.5e-45 186.8 173 56.6
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 9.7e-45 184.9 174 52.3
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 9.7e-45 184.9 126 71.4
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 1.3e-44 184.5 126 71.4
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 1.6e-44 184.1 158 56.3
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 2.8e-44 183.3 158 58.2
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 2.8e-44 183.3 166 57.8
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 2.8e-44 183.3 170 52.9
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 2.8e-44 183.3 170 52.9
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 3.7e-44 183.0 170 53.5
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 3.7e-44 183.0 159 58.5
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 4.8e-44 182.6 157 61.1
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 8.2e-44 181.8 173 55.5
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 8.2e-44 181.8 162 53.1
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 1.1e-43 181.4 170 53.5
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.1e-43 181.4 232 42.2
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 1.1e-43 181.4 131 67.9
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 6.9e-43 178.7 157 59.9
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 1.2e-42 177.9 175 52.0
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 1.5e-42 177.6 168 54.2
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 2.0e-42 177.2 162 55.6
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 3.4e-42 176.4 164 54.9
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 4.5e-42 176.0 166 54.2
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.0e-41 174.9 156 57.1
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.0e-41 174.9 164 54.3
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.7e-41 174.1 167 53.9
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.7e-41 174.1 163 52.8
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 1.7e-41 174.1 159 57.2
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 2.2e-41 173.7 164 55.5
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 2.2e-41 173.7 164 55.5
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 2.9e-41 173.3 121 65.3
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 8.5e-41 171.8 164 53.7
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 7.2e-40 168.7 132 62.9
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 6.1e-39 165.6 140 57.9
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.0e-38 164.9 161 54.7
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.4e-38 164.5 127 63.8
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 5.1e-38 162.5 161 54.0
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.1e-37 161.4 268 40.7
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.1e-37 161.4 161 53.4
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 1.5e-37 161.0 160 51.2
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 6.9e-35 152.1 153 49.7
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 2.6e-34 150.2 163 50.9
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 1.0e-33 148.3 117 62.4
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 1.4e-32 144.4 80 85.0
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 1.6e-31 141.0 137 51.1
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 2.1e-31 140.6 139 54.7
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 1.4e-30 137.9 110 66.4
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 6.7e-30 135.6 128 50.8
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 6.7e-30 135.6 128 50.8
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 3.3e-29 133.3 138 52.2
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 3.3e-29 133.3 93 65.6
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 5.7e-29 132.5 188 41.0
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 1.7e-28 131.0 121 52.9
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 1.4e-22 111.3 93 58.1
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 1.1e-19 101.7 90 52.2
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.4e-19 100.5 95 50.5
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 3.5e-18 96.7 108 48.1
BolSC83t61262H Brassica oleracea HOM05D006505 ORTHO05D008086 5.9e-18 95.9 236 35.6
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 5.5e-16 89.4 79 57.0
BraA05t21433Z Brassica rapa HOM05D006505 ORTHO05D008086 1.8e-14 84.3 49 85.7
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 5.2e-14 82.8 76 48.7
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 1.7e-12 77.8 46 76.1
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 4.8e-12 76.3 134 35.1
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 1.1e-11 75.1 69 53.6
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 7.0e-11 72.4 68 54.4
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 2.2e-09 67.4 104 42.3
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 5.0e-09 66.2 93 45.2
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.9e-08 64.3 121 36.4
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 3.2e-08 63.5 74 44.6
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 4.2e-08 63.2 74 44.6
arahy.Tifrunner.gnm1.ann1.U4I6QC Arachis hypogaea HOM05D000964 ORTHO05D003870 4.7e-07 59.7 121 33.9
Medtr3g108030 Medicago truncatula HOM05D000964 ORTHO05D003870 4.7e-07 59.7 121 34.7
CAN.G1595.3 Capsicum annuum HOM05D000964 ORTHO05D003870 8.0e-07 58.9 121 33.1
Solyc00g500030.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 8.0e-07 58.9 121 33.1
Solyc00g500075.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 8.0e-07 58.9 121 33.1
Cfa018462 Carpinus fangiana HOM05D000964 ORTHO05D003870 1.0e-06 58.5 121 35.5
DCAR_032518 Daucus carota HOM05D000964 ORTHO05D003870 1.0e-06 58.5 121 33.1
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 1.0e-06 58.5 74 41.9
HanXRQChr06g0180681 Helianthus annuus HOM05D000964 ORTHO05D003870 1.4e-06 58.2 121 33.1
VMungo0783G0001 Vigna mungo HOM05D000964 ORTHO05D003870 1.4e-06 58.2 121 33.1
ATR0306G003 Amborella trichopoda HOM05D000964 ORTHO05D003870 1.8e-06 57.8 121 34.7
Gohir.A05G326932 Gossypium hirsutum HOM05D000964 ORTHO05D003870 1.8e-06 57.8 121 33.9
HanXRQChr00c0557g0575741 Helianthus annuus HOM05D000964 ORTHO05D003870 1.8e-06 57.8 121 33.1
HanXRQChr01g0020231 Helianthus annuus HOM05D000964 ORTHO05D003870 1.8e-06 57.8 121 33.1
HanXRQChr04g0127501 Helianthus annuus HOM05D000964 ORTHO05D003870 1.8e-06 57.8 121 33.1
HanXRQChr10g0284371 Helianthus annuus HOM05D000964 ORTHO05D003870 1.8e-06 57.8 121 33.1
HanXRQChr10g0318071 Helianthus annuus HOM05D000964 ORTHO05D003870 1.8e-06 57.8 121 33.1
HanXRQChr11g0326951 Helianthus annuus HOM05D000964 ORTHO05D003870 1.8e-06 57.8 121 33.1
HanXRQCPg0580171 Helianthus annuus HOM05D000964 ORTHO05D003870 1.8e-06 57.8 121 33.1
EL10Ac4g07916 Beta vulgaris HOM05D000964 ORTHO05D003870 2.3e-06 57.4 121 34.7
MELO3C001187.2 Cucumis melo HOM05D000964 ORTHO05D003870 2.3e-06 57.4 121 34.7
AL2G20570 Arabidopsis lyrata HOM05D000964 ORTHO05D003870 3.0e-06 57.0 121 33.1
ATCG00750 Arabidopsis thaliana HOM05D000964 ORTHO05D003870 3.0e-06 57.0 121 33.1
BcaNung05008 Brassica carinata HOM05D000964 ORTHO05D003870 3.0e-06 57.0 121 33.1
BNapus_Darmor_BZH_scaffold_253p00340 Brassica napus HOM05D000964 ORTHO05D003870 3.0e-06 57.0 121 33.1
BolSC29t60527H Brassica oleracea HOM05D000964 ORTHO05D003870 3.0e-06 57.0 121 33.1
BolSC29t60608H Brassica oleracea HOM05D000964 ORTHO05D003870 3.0e-06 57.0 121 33.1
BolSC35t60668H Brassica oleracea HOM05D000964 ORTHO05D003870 3.0e-06 57.0 121 33.1
BolSC35t60731H Brassica oleracea HOM05D000964 ORTHO05D003870 3.0e-06 57.0 121 33.1
BraSC138t45555Z Brassica rapa HOM05D000964 ORTHO05D003870 3.0e-06 57.0 121 33.1
BraSC59t46572Z Brassica rapa HOM05D000964 ORTHO05D003870 3.0e-06 57.0 121 33.1
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 3.0e-06 57.0 121 33.1
FvH4_c3g00200 Fragaria vesca HOM05D000964 ORTHO05D003870 3.0e-06 57.0 121 33.9
Gohir.1Z050234 Gossypium hirsutum HOM05D000964 ORTHO05D003870 3.0e-06 57.0 121 33.9
HanXRQChr10g0303901 Helianthus annuus HOM05D000964 ORTHO05D003870 4.0e-06 56.6 120 32.5
QL93p1043_0021 Quercus lobata HOM05D000964 ORTHO05D003870 4.0e-06 56.6 120 34.2
CAN.G327.19 Capsicum annuum HOM05D000964 ORTHO05D003870 5.2e-06 56.2 121 32.2
Gohir.A12G025000 Gossypium hirsutum HOM05D000964 ORTHO05D003870 5.2e-06 56.2 121 33.9
HanXRQChr02g0052621 Helianthus annuus HOM05D000964 ORTHO05D003870 5.2e-06 56.2 120 32.5
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 5.2e-06 56.2 74 41.9
PSO548G0016 Papaver somniferum HOM05D000964 ORTHO05D003870 5.2e-06 56.2 121 33.1
PSO832G3634 Papaver somniferum HOM05D000964 ORTHO05D003870 5.2e-06 56.2 120 35.0
Psat5g206520 Pisum sativum HOM05D000964 ORTHO05D003870 5.2e-06 56.2 144 31.9
Psat4g041080 Pisum sativum HOM05D000964 ORTHO05D003870 6.8e-06 55.8 121 33.1
HanXRQChr00c0392g0574491 Helianthus annuus HOM05D000964 ORTHO05D004047 8.8e-06 55.5 119 31.9
HanXRQChr08g0207991 Helianthus annuus HOM05D000964 ORTHO05D003870 8.8e-06 55.5 119 31.9
PGR111G0041 Punica granatum HOM05D000964 ORTHO05D003870 8.8e-06 55.5 121 33.9
RcHm_v2.0_CPg0501901 Rosa chinensis HOM05D000964 ORTHO05D004047 8.8e-06 55.5 119 33.6


User provided reference genes

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