Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G20440 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 1.6e-101 373.2 266 100.0
AL1G33370 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 6.8e-92 341.3 266 94.0
Carub.0001s1991 Capsella rubella HOM05D008570 ORTHO05D005639 3.9e-55 219.2 181 79.6
BcaNung03383 Brassica carinata HOM05D008570 ORTHO05D005639 1.8e-31 140.6 185 68.6
C07p23020 Brassica napus HOM05D008570 ORTHO05D005639 1.8e-31 140.6 185 68.6
BolC7t42843H Brassica oleracea HOM05D008570 ORTHO05D005639 2.5e-30 136.7 189 68.3
BraA07t29305Z Brassica rapa HOM05D008570 ORTHO05D005639 2.4e-28 130.2 189 66.1
A07p15670 Brassica napus HOM05D008570 ORTHO05D005639 1.2e-27 127.9 189 65.1
A07p15780 Brassica napus HOM05D008570 ORTHO05D005639 1.2e-27 127.9 189 65.1
CARHR020900 Cardamine hirsuta HOM05D008570 ORTHO05D005639 1.2e-27 127.9 181 62.4
AT1G20450 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 2.0e-27 127.1 275 56.7
Carub.0001s1992 Capsella rubella HOM05D008570 ORTHO05D005639 1.0e-26 124.8 276 58.0
Thhalv10008706m.g Eutrema salsugineum HOM05D008570 ORTHO05D005639 3.8e-26 122.9 264 55.3
BcaB03g14320 Brassica carinata HOM05D008570 ORTHO05D005639 6.5e-26 122.1 278 50.7
Sp1g18160 Schrenkiella parvula HOM05D008570 ORTHO05D005639 3.2e-25 119.8 288 49.0
BcaC05g25955 Brassica carinata HOM05D008570 ORTHO05D005639 7.2e-25 118.6 185 64.3
C05p19040 Brassica napus HOM05D008570 ORTHO05D005639 7.2e-25 118.6 185 64.3
BolC5t30605H Brassica oleracea HOM05D008570 ORTHO05D005639 2.1e-24 117.1 188 60.1
Thhalv10008313m.g Eutrema salsugineum HOM05D008570 ORTHO05D005639 2.1e-24 117.1 285 52.6
BNapus_Darmor_BZH_scaffold_170p00020 Brassica napus HOM05D008570 ORTHO05D005639 3.6e-24 116.3 184 64.1
AL1G33380 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 1.8e-23 114.0 276 54.0
BraA06t24754Z Brassica rapa HOM05D008570 ORTHO05D005639 2.0e-22 110.5 191 61.3
Carub.0002s2307 Capsella rubella HOM05D008570 ORTHO05D005639 4.8e-21 105.9 189 53.4
BcaC08g47283 Brassica carinata HOM05D008570 ORTHO05D005639 4.1e-20 102.8 190 52.1
BolC6t40053H Brassica oleracea HOM05D008570 ORTHO05D005639 4.1e-20 102.8 190 52.1
BcaB07g32047 Brassica carinata HOM05D008570 ORTHO05D005639 2.6e-19 100.1 285 51.9
A07p28610 Brassica napus HOM05D008570 ORTHO05D005639 1.7e-18 97.4 190 52.6
BolC2t09364H Brassica oleracea HOM05D008570 ORTHO05D005639 1.7e-18 97.4 172 50.6
C02p33360 Brassica napus HOM05D008570 ORTHO05D005639 8.5e-18 95.1 172 49.4
Thhalv10019152m.g Eutrema salsugineum HOM05D008570 ORTHO05D005639 5.5e-17 92.4 179 54.2
CARHR069730 Cardamine hirsuta HOM05D008570 ORTHO05D005639 9.4e-17 91.7 173 51.4
BcaC08g47112 Brassica carinata HOM05D008570 ORTHO05D005639 1.2e-16 91.3 179 49.7
C06p50130 Brassica napus HOM05D008570 ORTHO05D005639 1.2e-16 91.3 179 49.2
A07p41750 Brassica napus HOM05D008570 ORTHO05D005639 6.1e-16 89.0 179 50.3
BraA07t31704Z Brassica rapa HOM05D008570 ORTHO05D005639 6.1e-16 89.0 179 49.7
AT1G76180 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 1.4e-15 87.8 184 50.5
Sp5g31320 Schrenkiella parvula HOM05D008570 ORTHO05D005639 1.4e-15 87.8 179 55.3
BraA02t07079Z Brassica rapa HOM05D008570 ORTHO05D005639 3.9e-15 86.3 173 49.1
A02p20480 Brassica napus HOM05D008570 ORTHO05D005639 8.8e-15 85.1 173 48.6
THA.LOC104809672 Tarenaya hassleriana HOM05D008570 ORTHO05D005639 1.1e-14 84.7 169 54.4
C06p32190 Brassica napus HOM05D008570 ORTHO05D005639 1.5e-14 84.3 179 46.9
Aa31LG4G6290 Aethionema arabicum HOM05D008570 ORTHO05D005639 1.7e-13 80.9 180 45.6
BcaB05g24972 Brassica carinata HOM05D008570 ORTHO05D005639 1.7e-13 80.9 183 55.2
AL2G36240 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 3.7e-13 79.7 152 54.6
Aqoxy6G01838 Aquilegia oxysepala HOM05D008201 ORTHO05D005639 1.7e-10 70.9 243 36.6
arahy.Tifrunner.gnm1.ann1.QP4M0U Arachis hypogaea HOM05D008201 ORTHO05D005639 1.9e-09 67.4 263 41.4
Atru.chr13.170 Acer truncatum HOM05D008201 ORTHO05D005639 1.6e-08 64.3 170 42.9
Manes.05G140400 Manihot esculenta HOM05D008201 ORTHO05D005639 2.7e-08 63.5 167 43.7
Ca_15345_v3 Cicer arietinum L. HOM05D015205 ORTHO05D005639 3.6e-08 63.2 177 34.5
Ca_30250_v3 Cicer arietinum L. HOM05D015205 ORTHO05D005639 3.6e-08 63.2 177 34.5
THA.LOC104813763 Tarenaya hassleriana HOM05D008570 ORTHO05D005639 3.6e-08 63.2 166 45.8
HanXRQChr08g0216051 Helianthus annuus HOM05D008201 ORTHO05D005639 6.1e-08 62.4 261 33.3
Psat5g004800 Pisum sativum HOM05D015205 ORTHO05D005639 6.1e-08 62.4 185 41.6
Lj4A14T47 Lonicera japonica HOM05D008201 ORTHO05D005639 1.4e-07 61.2 154 34.4
Medtr3g117290 Medicago truncatula HOM05D015205 ORTHO05D005639 1.4e-07 61.2 165 47.3
MD15G1003900 Malus domestica HOM05D008201 ORTHO05D005639 8.8e-07 58.5 299 34.8
PGR083G0607 Punica granatum HOM05D008201 ORTHO05D005639 8.8e-07 58.5 268 38.1
Sabra05G0191700 Salix brachista HOM05D008201 ORTHO05D005639 8.8e-07 58.5 156 39.1
Aa31LG7G4750 Aethionema arabicum HOM05D008570 ORTHO05D059195 1.2e-06 58.2 51 68.6
TPR.G32200 Trifolium pratense HOM05D015205 ORTHO05D005639 1.2e-06 58.2 187 40.6
MD08G1004500 Malus domestica HOM05D008201 ORTHO05D005639 4.4e-06 56.2 293 36.9
ECA233G2943 Erigeron canadensis HOM05D002022 ORTHO05D002056 5.7e-06 55.8 263 33.8
CiPaw.08G071500 Carya illinoinensis HOM05D008201 ORTHO05D005639 7.5e-06 55.5 175 42.9


User provided reference genes

Program Settings