Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 7.2e-136 487.3 251 100.0
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 2.1e-127 459.1 251 94.8
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 4.1e-123 444.9 251 90.8
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 3.0e-121 438.7 252 90.5
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 4.3e-120 434.9 251 89.2
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 1.8e-118 429.5 251 89.6
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 9.9e-109 397.1 258 80.2
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 3.4e-101 372.1 246 78.9
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 5.8e-101 371.3 246 79.3
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 1.7e-97 359.8 237 81.0
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 1.7e-97 359.8 237 81.0
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 5.6e-96 354.8 228 78.5
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 2.8e-95 352.4 241 79.3
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 4.0e-94 348.6 228 81.6
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 7.6e-85 317.8 223 69.5
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 2.2e-84 316.2 234 67.1
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 1.1e-83 313.9 251 65.3
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 4.2e-83 312.0 251 63.3
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 4.6e-82 308.5 236 65.7
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 6.0e-82 308.1 232 64.7
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 7.9e-82 307.8 240 64.2
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 1.3e-81 307.0 247 64.0
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 1.3e-81 307.0 251 61.8
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 1.8e-81 306.6 240 65.0
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 1.8e-81 306.6 239 61.9
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 1.8e-81 306.6 221 68.3
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 2.3e-81 306.2 251 61.8
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 5.1e-81 305.1 251 62.2
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 6.7e-81 304.7 251 61.4
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 6.7e-81 304.7 226 65.5
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 6.7e-81 304.7 226 65.5
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.1e-80 303.9 251 62.2
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 2.5e-80 302.8 239 64.0
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 2.5e-80 302.8 248 61.7
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 2.5e-80 302.8 224 66.1
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 4.3e-80 302.0 221 67.4
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 1.3e-79 300.4 250 62.8
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 1.6e-79 300.1 231 62.8
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 2.1e-79 299.7 224 67.0
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 2.1e-79 299.7 221 65.6
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 2.8e-79 299.3 250 61.6
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 3.7e-79 298.9 241 62.2
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 4.8e-79 298.5 224 63.8
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 6.2e-79 298.1 241 61.8
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 6.2e-79 298.1 241 62.2
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 6.2e-79 298.1 248 61.7
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 6.2e-79 298.1 225 67.1
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 8.1e-79 297.7 248 61.7
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 8.1e-79 297.7 224 67.4
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 1.4e-78 297.0 225 64.0
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 1.4e-78 297.0 227 65.2
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 1.8e-78 296.6 250 61.2
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 2.4e-78 296.2 224 64.3
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 2.4e-78 296.2 221 65.6
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 3.1e-78 295.8 243 60.9
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 4.0e-78 295.4 234 62.0
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 5.3e-78 295.0 225 64.4
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 9.0e-78 294.3 240 62.1
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 3.4e-77 292.4 252 59.9
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 3.4e-77 292.4 240 60.4
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.0e-76 290.8 227 63.9
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 1.3e-76 290.4 225 64.4
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 2.2e-76 289.7 225 65.8
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 1.1e-75 287.3 227 62.1
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 3.2e-75 285.8 224 63.8
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 4.2e-75 285.4 225 63.6
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 4.2e-75 285.4 224 62.1
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 7.1e-75 284.6 221 63.8
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 1.2e-74 283.9 224 61.6
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 2.1e-74 283.1 236 64.4
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 3.5e-74 282.3 222 63.1
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 6.7e-73 278.1 235 61.3
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 7.4e-72 274.6 229 63.3
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 3.7e-71 272.3 238 58.8
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 8.2e-71 271.2 224 60.7
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 1.8e-70 270.0 294 51.4
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 2.4e-70 269.6 225 57.3
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 2.4e-70 269.6 235 60.0
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 3.1e-70 269.2 224 60.3
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 4.1e-70 268.9 240 55.0
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 5.8e-69 265.0 233 56.2
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 7.6e-69 264.6 240 55.4
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.7e-68 263.5 208 63.5
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 2.2e-68 263.1 218 60.6
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 6.5e-68 261.5 239 57.3
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 1.4e-67 260.4 221 59.3
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.2e-66 257.3 259 54.4
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 1.8e-65 253.4 237 56.1
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 2.3e-65 253.1 241 55.6
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 4.8e-63 245.4 224 57.1
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 3.1e-62 242.7 221 57.0
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 6.9e-62 241.5 187 63.1
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 1.4e-59 233.8 194 59.3
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 1.9e-59 233.4 200 56.5
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 4.2e-59 232.3 209 57.9
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 3.3e-56 222.6 212 58.5
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 4.3e-56 222.2 290 48.3
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 7.4e-56 221.5 260 49.2
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 2.8e-55 219.5 211 58.3
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 4.8e-55 218.8 238 51.7
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 5.3e-54 215.3 182 57.7
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 9.1e-54 214.5 197 55.3
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 4.2e-51 205.7 131 84.7
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 1.2e-50 204.1 173 59.0
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 8.8e-49 198.0 159 64.8
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 6.3e-47 191.8 241 47.3
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 2.4e-46 189.9 153 60.1
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 4.1e-46 189.1 220 48.6
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 1.6e-45 187.2 151 61.6
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 1.0e-41 174.5 162 59.9
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 1.3e-39 167.5 176 52.3
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 7.7e-37 158.3 124 63.7
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 2.2e-36 156.8 121 62.0
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 3.8e-36 156.0 123 62.6
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 6.1e-34 148.7 146 55.5
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 1.5e-32 144.1 219 36.5
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 2.5e-27 126.7 222 32.4
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 1.5e-19 100.9 107 48.6
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 6.1e-18 95.5 80 57.5
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 8.3e-15 85.1 65 60.0
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 1.6e-10 70.9 88 47.7
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 1.1e-06 58.2 43 62.8


User provided reference genes

Program Settings