Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G12650 Arabidopsis thaliana HOM05D004958 ORTHO05D005983 3.1e-123 445.3 249 100.0
AL1G24110 Arabidopsis lyrata HOM05D004958 ORTHO05D005983 2.8e-116 422.2 249 96.0
Carub.0001s1234 Capsella rubella HOM05D004958 ORTHO05D005983 2.8e-103 379.0 249 82.3
CARHR012940 Cardamine hirsuta HOM05D004958 ORTHO05D005983 3.4e-93 345.5 253 79.8
Sp1g11240 Schrenkiella parvula HOM05D004958 ORTHO05D005983 1.8e-86 323.2 253 76.7
BolC8t52265H Brassica oleracea HOM05D004958 ORTHO05D005983 2.0e-85 319.7 272 72.4
BraA09t41722Z Brassica rapa HOM05D004958 ORTHO05D005983 5.8e-85 318.2 272 72.4
A09p63740 Brassica napus HOM05D004958 ORTHO05D005983 3.2e-83 312.4 272 71.3
BcaB08g34261 Brassica carinata HOM05D004958 ORTHO05D005983 5.1e-81 305.1 271 70.5
Aa31LG1G2030 Aethionema arabicum HOM05D004958 ORTHO05D005983 1.1e-80 303.9 247 74.1
BcaC07g41688 Brassica carinata HOM05D004958 ORTHO05D005983 5.6e-80 301.6 262 72.1
Thhalv10008688m.g Eutrema salsugineum HOM05D004958 ORTHO05D005983 3.6e-79 298.9 219 77.2
C08p47240 Brassica napus HOM05D004958 ORTHO05D005983 4.7e-79 298.5 227 72.7
THA.LOC104823571 Tarenaya hassleriana HOM05D004958 ORTHO05D005983 5.2e-70 268.5 246 65.4
Hund11528 Selenicereus undatus HOM05D004958 ORTHO05D005983 3.2e-67 259.2 236 62.3
Atru.chr12.1358 Acer truncatum HOM05D004958 ORTHO05D005983 5.4e-67 258.5 204 67.2
DCAR_008420 Daucus carota HOM05D004958 ORTHO05D005983 4.6e-66 255.4 242 64.5
Potri.001G110000 Populus trichocarpa HOM05D004958 ORTHO05D005983 1.7e-65 253.4 205 66.3
Duzib068G0251 Durio zibethinus HOM05D004958 ORTHO05D005983 5.1e-65 251.9 250 63.2
Ciclev10021851m.g Citrus clementina HOM05D004958 ORTHO05D005983 6.6e-65 251.5 204 65.7
Migut.E01294 Erythranthe guttata HOM05D004958 ORTHO05D005983 3.3e-64 249.2 239 56.5
SGA_v2.0_scaffold196G40881 Striga asiatica HOM05D004958 ORTHO05D005983 4.3e-64 248.8 239 58.2
Gohir.D11G021000 Gossypium hirsutum HOM05D004958 ORTHO05D005983 9.6e-64 247.7 204 64.2
Manes.01G066700 Manihot esculenta HOM05D004958 ORTHO05D005983 1.3e-63 247.3 205 63.9
Sed0017231 Sechium edule HOM05D004958 ORTHO05D005983 1.3e-63 247.3 242 56.2
Eucgr.D01919 Eucalyptus grandis HOM05D004958 ORTHO05D005983 1.6e-63 246.9 240 57.9
Gorai.007G022300 Gossypium raimondii HOM05D004958 ORTHO05D005983 2.1e-63 246.5 204 63.7
Actinidia27408 Actinidia chinensis HOM05D004958 ORTHO05D005983 2.8e-63 246.1 250 56.8
Gohir.A11G021300 Gossypium hirsutum HOM05D004958 ORTHO05D005983 6.2e-63 245.0 204 63.7
CSS0008368 Camellia sinensis var. sinensis HOM05D004958 ORTHO05D005983 8.1e-63 244.6 239 58.2
GSVIVG01019856001 Vitis vinifera HOM05D004958 ORTHO05D005983 8.1e-63 244.6 205 63.4
MSTRG.1893 Avicennia marina HOM05D004958 ORTHO05D005983 1.1e-62 244.2 252 57.1
PGR031G1609 Punica granatum HOM05D004958 ORTHO05D005983 4.0e-62 242.3 248 56.5
Solyc06g073120.4 Solanum lycopersicum HOM05D004958 ORTHO05D005983 4.0e-62 242.3 236 56.4
Nn6g34244 Nelumbo nucifera HOM05D004958 ORTHO05D005983 2.0e-61 240.0 249 57.4
Nitab4.5_0003113g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 2.0e-61 240.0 239 55.2
Nitab4.5_0003994g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 2.0e-61 240.0 238 58.8
Sopen06g029470 Solanum pennellii HOM05D004958 ORTHO05D005983 2.0e-61 240.0 239 55.6
CAN.G65.155 Capsicum annuum HOM05D004958 ORTHO05D005983 3.4e-61 239.2 245 57.6
Nitab4.5_0001586g0220 Nicotiana tabacum HOM05D004958 ORTHO05D005983 3.4e-61 239.2 239 59.8
PGSC0003DMG400026921 Solanum tuberosum HOM05D004958 ORTHO05D005983 3.4e-61 239.2 239 55.2
Thecc.03G271700 Theobroma cacao HOM05D004958 ORTHO05D005983 3.4e-61 239.2 245 57.1
Glyma.07G082900 Glycine max HOM05D004958 ORTHO05D005983 7.6e-61 238.0 239 61.5
Lsat_1_v5_gn_6_87641 Lactuca sativa HOM05D004958 ORTHO05D005983 1.3e-60 237.3 241 57.7
VMungo0331G1538 Vigna mungo HOM05D004958 ORTHO05D005983 1.3e-60 237.3 210 61.0
ClCG08G000800 Citrullus lanatus HOM05D004958 ORTHO05D005983 2.2e-60 236.5 251 53.0
Hma1.2p1_0514F.1_g170070 Hydrangea macrophylla HOM05D004958 ORTHO05D005983 2.9e-60 236.1 246 55.3
Phvul.010G049100 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 6.4e-60 235.0 210 60.5
Prupe.6G131000 Prunus persica HOM05D004958 ORTHO05D005983 8.4e-60 234.6 238 58.0
RcHm_v2.0_Chr5g0045251 Rosa chinensis HOM05D004958 ORTHO05D005983 1.1e-59 234.2 206 59.2
Phvul.009G080900 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 1.9e-59 233.4 210 60.5
TWI81G1011 Tripterygium wilfordii HOM05D004958 ORTHO05D005983 2.4e-59 233.0 249 59.0
Psat0s646g0120 Pisum sativum HOM05D004958 ORTHO05D005983 3.2e-59 232.6 241 59.8
Lalb_Chr12g0208371 Lupinus albus HOM05D004958 ORTHO05D005983 4.2e-59 232.3 236 59.3
Lalb_Chr12g0208451 Lupinus albus HOM05D004958 ORTHO05D005983 4.2e-59 232.3 236 59.3
Lalb_Chr07g0189581 Lupinus albus HOM05D004958 ORTHO05D005983 7.1e-59 231.5 237 59.5
Medtr5g058150 Medicago truncatula HOM05D004958 ORTHO05D005983 9.3e-59 231.1 250 57.6
Peaxi162Scf01294g00034 Petunia axillaris HOM05D004958 ORTHO05D005983 9.3e-59 231.1 249 53.4
Nitab4.5_0002553g0040 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.2e-58 230.7 239 56.9
Ca_24641_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 4.6e-58 228.8 248 57.7
Aqoxy5G02043 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 6.0e-58 228.4 236 53.8
Ca_05359_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 6.0e-58 228.4 204 60.8
FvH4_3g25070 Fragaria vesca HOM05D000097 ORTHO05D005983 6.0e-58 228.4 207 58.9
MELO3C019927.2 Cucumis melo HOM05D004958 ORTHO05D005983 1.8e-57 226.9 242 52.5
arahy.Tifrunner.gnm1.ann1.BCQ50G Arachis hypogaea HOM05D004958 ORTHO05D005983 2.3e-57 226.5 205 58.5
EL10Ac5g12729 Beta vulgaris HOM05D004958 ORTHO05D005983 3.9e-57 225.7 204 57.4
ECA240G3664 Erigeron canadensis HOM05D004958 ORTHO05D005983 1.5e-56 223.8 206 58.3
Lj3g0000848 Lotus japonicus HOM05D004958 ORTHO05D005983 4.3e-56 222.2 209 58.9
FvH4_7g07500 Fragaria vesca HOM05D004958 ORTHO05D005983 7.4e-56 221.5 244 52.5
FAN06G2073 Fragaria x ananassa HOM05D004958 ORTHO05D005983 7.4e-56 221.5 245 53.1
FAN10G1939 Fragaria x ananassa HOM05D004958 ORTHO05D005983 7.4e-56 221.5 245 53.1
ATR0757G162 Amborella trichopoda HOM05D004958 ORTHO05D005983 9.6e-56 221.1 204 57.8
FAN01G2068 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.6e-55 220.3 204 57.8
CsaV3_5G039810 Cucumis sativus L. HOM05D004958 ORTHO05D005983 3.7e-55 219.2 271 47.6
MD03G1146200 Malus domestica HOM05D004958 ORTHO05D005983 3.7e-55 219.2 248 52.0
vmacro13919 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 3.7e-55 219.2 239 54.0
PSO782G2900 Papaver somniferum HOM05D004958 ORTHO05D005983 1.4e-54 217.2 207 57.5
TPR.G27805 Trifolium pratense HOM05D004958 ORTHO05D005983 3.1e-54 216.1 248 56.5
PSO478G4928 Papaver somniferum HOM05D004958 ORTHO05D005983 5.3e-54 215.3 207 57.0
Glyma.03G021100 Glycine max HOM05D004958 ORTHO05D005983 9.0e-54 214.5 233 53.2
Ah.12g057600 Amaranthus hybridus HOM05D004958 ORTHO05D005983 1.2e-53 214.2 236 50.4
FAN03G3010 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.2e-53 214.2 245 52.2
Prupe.8G125000 Prunus persica HOM05D004958 ORTHO05D005983 1.2e-53 214.2 216 55.6
MBI11_g40802_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.3e-52 210.7 207 55.1
HPP92_003759 Vanilla planifolia HOM05D004958 ORTHO05D005983 4.9e-52 208.8 204 55.9
COL.COLO4_09338 Corchorus olitorius HOM05D001926 ORTHO05D002121 1.1e-51 207.6 204 57.8
Medtr6g075250 Medicago truncatula HOM05D004958 ORTHO05D005983 1.9e-51 206.8 249 49.8
MBI11_g41127_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.2e-51 206.1 201 56.2
Os09g0525200 Oryza sativa ssp. japonica HOM05D004958 ORTHO05D005983 5.5e-51 205.3 205 53.2
SEGI_09748 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 1.6e-50 203.8 206 52.9
unitig_899.g14861 Utricularia gibba HOM05D004958 ORTHO05D005983 1.3e-49 200.7 272 47.4
SalBow7G2511 Salvia bowleyana HOM05D004958 ORTHO05D005983 3.0e-49 199.5 217 54.4
vmacro12796 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 2.5e-48 196.4 296 43.9
AUR62017291 Chenopodium quinoa HOM05D004958 ORTHO05D005983 5.6e-48 195.3 168 59.5
FAN11G1832 Fragaria x ananassa HOM05D000097 ORTHO05D005983 9.6e-48 194.5 241 48.1
MBI11_g31491_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 2.1e-47 193.4 220 50.5
Zm00001eb103160 Zea mays HOM05D004958 ORTHO05D005983 2.1e-47 193.4 206 52.4
Cc08_g14020 Coffea canephora HOM05D004958 ORTHO05D005983 6.2e-47 191.8 211 54.5
Rhsim07G0094600 Rhododendron simsii HOM05D004958 ORTHO05D005983 6.2e-47 191.8 213 54.0
AagrBONN_evm.TU.Sc2ySwM_362.2285 Anthoceros agrestis HOM05D004958 ORTHO05D005983 1.8e-46 190.3 207 49.3
Cfa012106 Carpinus fangiana HOM05D004958 ORTHO05D005983 5.3e-46 188.7 250 46.4
Haze_20475 Corylus avellana HOM05D004958 ORTHO05D005983 3.8e-44 182.6 310 44.2
QL12p017317 Quercus lobata HOM05D004958 ORTHO05D005983 1.1e-43 181.0 318 44.3
Mapoly0004s0034 Marchantia polymorpha HOM05D004958 ORTHO05D005983 2.7e-42 176.4 205 47.8
SMO228G0196 Selaginella moellendorffii HOM05D004958 ORTHO05D005983 2.7e-42 176.4 204 48.0
Pp3c15_19260 Physcomitrium patens HOM05D004958 ORTHO05D005983 3.5e-42 176.0 207 47.3
MD11G1165500 Malus domestica HOM05D004958 ORTHO05D005983 6.0e-42 175.3 320 40.0
MBI11_g41124_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.3e-41 174.1 165 57.0
CiPaw.12G097900 Carya illinoinensis HOM05D004958 ORTHO05D005983 1.8e-41 173.7 285 44.6
Atru.chr12.1359 Acer truncatum HOM05D004958 ORTHO05D005983 3.9e-41 172.6 144 62.5
MBI11_g47761_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.9e-41 172.6 169 55.6
MBI04_g02075_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 2.2e-39 166.8 208 46.6
Sabra01G0083200 Salix brachista HOM05D004958 ORTHO05D005983 2.8e-39 166.4 199 50.3
FAN21G2287 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.1e-38 164.5 143 60.1
AUR62010651 Chenopodium quinoa HOM05D004958 ORTHO05D005983 5.3e-38 162.2 205 47.3
Dinv39007 Davidia involucrata HOM05D004958 ORTHO05D005983 4.2e-35 152.5 164 54.3
Sc22g0000230 Simmondsia chinensis HOM05D004958 ORTHO05D005983 4.2e-35 152.5 201 51.2
Eucgr.L01965 Eucalyptus grandis HOM05D004958 ORTHO05D005983 1.9e-32 143.7 155 53.5
CBR_g12215 Chara braunii HOM05D004958 ORTHO05D005983 4.3e-32 142.5 168 48.8
Cre09.g401663 Chlamydomonas reinhardtii HOM05D004958 ORTHO05D005983 7.4e-32 141.7 218 43.1
CDE02G4341 Ceratophyllum demersum HOM05D004958 ORTHO05D005983 5.0e-28 129.0 127 54.3
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 2.8e-23 113.2 74 79.7
PRCOL_00004135 Prasinoderma coloniale HOM05D004958 ORTHO05D005983 8.2e-23 111.7 197 37.1
Zm00001eb297680 Zea mays HOM05D004958 ORTHO05D005983 1.2e-21 107.8 93 59.1
Aqoxy60s002 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 1.0e-20 104.8 126 50.0
MBI11_g32389_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.7e-20 104.0 220 35.0
Haze_08945 Corylus avellana HOM05D004958 ORTHO05D005983 5.0e-20 102.4 107 55.1
SEGI_22925 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 2.5e-19 100.1 75 68.0
Phvul.009G247000 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 2.7e-18 96.7 236 32.6
Cfa023436 Carpinus fangiana HOM05D004958 ORTHO05D005983 5.2e-17 92.4 177 37.9
FvH4_3g24970 Fragaria vesca HOM05D004958 ORTHO05D005983 1.8e-14 84.0 78 59.0
MBI11_g47763_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 5.9e-13 79.0 124 43.5
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 6.5e-12 75.5 74 59.5
FAN11G3948 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.1e-11 74.7 207 31.9
MBI11_g12655_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.1e-11 74.7 170 35.3
TAR636G1581 Trochodendron aralioides HOM05D004958 ORTHO05D005983 1.1e-11 74.7 76 50.0
BcaB03g13174 Brassica carinata HOM05D004958 ORTHO05D005983 1.9e-11 73.9 60 68.3
QL02p071798 Quercus lobata HOM05D004958 ORTHO05D005983 5.5e-11 72.4 153 39.2
Cpa.g.sc53.73 Carica papaya HOM05D004958 ORTHO05D005983 7.2e-11 72.0 45 75.6
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 7.2e-11 72.0 59 55.9
C08p15580 Brassica napus HOM05D004958 ORTHO05D005983 5.2e-09 65.9 84 51.2
Zm00001eb199630 Zea mays HOM05D004958 ORTHO05D005983 8.8e-09 65.1 56 53.6
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 2.2e-07 60.5 56 62.5
Oeu011662.1 Olea europaea HOM05D004958 ORTHO05D005983 2.8e-07 60.1 101 49.5
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 1.1e-06 58.2 56 60.7
A08p32700 Brassica napus HOM05D052515 ORTHO05D041951 5.3e-06 55.8 39 71.8


User provided reference genes

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