Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 2.2e-85 318.9 161 100.0
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 2.2e-77 292.4 156 91.7
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 8.4e-69 263.8 157 82.8
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 2.4e-68 262.3 157 81.5
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 4.3e-65 251.5 157 79.0
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 9.6e-65 250.4 157 78.3
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 3.0e-58 228.8 157 72.6
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 8.7e-58 227.3 157 71.3
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 1.1e-57 226.9 157 70.1
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 1.1e-57 226.9 157 72.0
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 2.5e-57 225.7 157 71.3
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 2.5e-57 225.7 157 71.3
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 2.8e-56 222.2 156 68.6
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 1.2e-54 216.9 171 64.9
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 1.3e-53 213.4 157 66.2
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 1.8e-42 176.4 152 54.6
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 2.3e-42 176.0 156 56.4
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 3.0e-42 175.6 160 53.8
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 3.9e-42 175.3 162 56.2
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 3.9e-42 175.3 163 54.6
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 5.1e-42 174.9 156 56.4
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 6.7e-42 174.5 160 54.4
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 8.7e-42 174.1 160 52.5
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 2.5e-41 172.6 156 55.1
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 3.3e-41 172.2 155 52.9
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 4.3e-41 171.8 155 54.2
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 5.6e-41 171.4 157 57.3
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 7.4e-41 171.0 152 53.3
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 9.6e-41 170.6 156 55.8
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 1.6e-40 169.9 158 55.7
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 2.1e-40 169.5 155 53.5
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 4.8e-40 168.3 155 52.3
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 6.2e-40 167.9 158 53.8
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 1.1e-39 167.2 157 54.8
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 1.1e-39 167.2 154 49.4
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.4e-39 166.8 152 53.3
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 1.8e-39 166.4 152 54.6
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 1.8e-39 166.4 152 52.6
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 2.4e-39 166.0 152 51.3
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.1e-39 165.6 155 52.3
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 4.0e-39 165.2 155 52.9
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 9.0e-39 164.1 152 51.3
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 9.0e-39 164.1 155 52.9
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 9.0e-39 164.1 153 54.2
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 1.2e-38 163.7 152 55.3
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 2.0e-38 162.9 155 51.6
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 2.0e-38 162.9 155 51.6
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 2.6e-38 162.5 150 53.3
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 3.4e-38 162.2 156 50.0
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 7.6e-38 161.0 158 50.6
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 7.6e-38 161.0 155 50.3
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 7.6e-38 161.0 151 51.0
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 1.0e-37 160.6 153 52.9
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 1.0e-37 160.6 151 53.0
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 1.3e-37 160.2 160 53.8
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 1.7e-37 159.8 153 51.6
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 2.2e-37 159.5 157 51.6
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 1.1e-36 157.1 148 49.3
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 3.2e-36 155.6 153 54.9
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 3.2e-36 155.6 153 54.9
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 4.2e-36 155.2 152 49.3
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 4.2e-36 155.2 155 50.3
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 5.5e-36 154.8 151 48.3
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 5.5e-36 154.8 151 49.7
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 1.2e-35 153.7 157 47.8
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 2.1e-35 152.9 156 51.9
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 3.5e-35 152.1 149 53.0
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 4.6e-35 151.8 150 52.7
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 7.9e-35 151.0 155 50.3
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 7.9e-35 151.0 154 48.1
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 1.0e-34 150.6 153 48.4
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 1.3e-34 150.2 155 47.7
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 2.3e-34 149.4 159 47.8
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 3.0e-34 149.1 155 47.1
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 3.0e-34 149.1 150 50.0
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 3.0e-34 149.1 159 48.4
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 3.9e-34 148.7 162 46.3
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 2.5e-33 146.0 159 49.1
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 4.3e-33 145.2 162 46.3
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 5.7e-33 144.8 156 46.8
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 7.4e-33 144.4 154 48.1
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 1.3e-32 143.7 152 45.4
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 1.3e-32 143.7 152 48.7
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 2.2e-32 142.9 152 47.4
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 2.2e-32 142.9 155 47.1
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 2.8e-32 142.5 150 48.7
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 1.4e-31 140.2 160 45.0
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 4.1e-31 138.7 157 45.9
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.3e-31 138.3 152 48.7
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 5.3e-31 138.3 118 52.5
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 6.9e-31 137.9 154 44.8
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 3.8e-29 132.1 157 45.2
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 6.5e-29 131.3 160 43.8
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 1.4e-28 130.2 149 43.6
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 1.2e-27 127.1 144 40.3
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 1.6e-27 126.7 158 44.3
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 2.1e-27 126.3 147 44.9
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 2.7e-27 125.9 126 51.6
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 6.1e-27 124.8 141 47.5
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.5e-25 120.2 155 40.6
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 5.7e-25 118.2 157 42.7
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 3.7e-24 115.5 152 42.1
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 6.3e-24 114.8 160 41.2
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 6.3e-24 114.8 160 41.2
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 1.0e-21 107.5 149 38.3
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 1.7e-21 106.7 150 43.3
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 3.8e-21 105.5 154 39.6
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 4.2e-20 102.1 107 46.7
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 2.7e-19 99.4 151 35.1
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 4.8e-16 88.6 158 35.4
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 2.9e-13 79.3 121 37.2
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 1.4e-12 77.0 156 30.8
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 1.4e-10 70.5 58 51.7
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 2.3e-10 69.7 135 31.9
CAN.G308.33 Capsicum annuum HOM05D002728 ORTHO05D002874 3.1e-07 59.3 144 25.7
DCAR_000664 Daucus carota HOM05D002728 ORTHO05D002874 9.1e-07 57.8 136 27.9
PRCOL_00001098 Prasinoderma coloniale HOM05D007082 ORTHO05D008895 2.0e-06 56.6 163 28.2
RcHm_v2.0_Chr6g0304821 Rosa chinensis HOM05D002728 ORTHO05D002874 2.6e-06 56.2 136 26.5


User provided reference genes

Program Settings