Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 9.0e-81 303.5 152 100.0
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 1.4e-78 296.2 152 97.4
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 6.0e-77 290.8 152 95.4
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 2.8e-74 282.0 152 92.1
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 2.9e-71 271.9 153 88.9
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 1.5e-67 259.6 156 83.3
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 3.7e-66 255.0 148 82.4
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.3e-63 246.5 149 79.9
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 1.1e-62 243.4 150 76.7
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 1.4e-62 243.0 150 75.3
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 1.9e-62 242.7 150 75.3
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 3.2e-62 241.9 150 76.0
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 4.8e-58 228.0 129 85.3
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 5.9e-56 221.1 156 69.9
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 3.8e-55 218.4 156 69.9
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 5.0e-55 218.0 156 69.9
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 8.5e-55 217.2 156 68.6
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 8.5e-55 217.2 156 70.5
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 8.5e-55 217.2 156 69.2
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 8.5e-55 217.2 156 70.5
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 1.9e-54 216.1 156 69.9
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 2.5e-54 215.7 155 69.0
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 3.2e-54 215.3 156 67.9
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 5.5e-54 214.5 156 69.9
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 7.2e-54 214.2 156 68.6
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 1.2e-53 213.4 156 67.9
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 2.1e-53 212.6 156 67.3
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 7.9e-53 210.7 156 66.0
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 1.0e-52 210.3 156 66.0
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 1.4e-52 209.9 156 66.7
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.4e-52 209.9 156 67.9
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 2.3e-52 209.1 156 65.4
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 2.3e-52 209.1 156 67.9
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 3.9e-52 208.4 156 66.7
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 8.8e-52 207.2 156 65.4
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 2.0e-51 206.1 156 65.4
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 2.6e-51 205.7 156 63.5
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 2.6e-51 205.7 156 65.4
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 3.3e-51 205.3 156 64.7
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 4.4e-51 204.9 156 65.4
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 4.4e-51 204.9 156 65.4
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 5.7e-51 204.5 156 66.0
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 7.4e-51 204.1 156 64.7
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 7.4e-51 204.1 156 66.0
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 9.7e-51 203.8 156 62.8
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.3e-50 203.4 156 66.0
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.7e-50 203.0 156 63.5
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 1.7e-50 203.0 154 63.6
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.7e-50 203.0 156 63.5
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 2.8e-50 202.2 156 66.7
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 2.8e-50 202.2 156 64.7
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 3.7e-50 201.8 156 62.8
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 4.8e-50 201.4 156 65.4
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 4.8e-50 201.4 156 63.5
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 6.3e-50 201.1 156 65.4
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 6.3e-50 201.1 156 62.8
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 6.3e-50 201.1 155 64.5
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 6.3e-50 201.1 156 64.7
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 8.2e-50 200.7 156 62.2
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 1.1e-49 200.3 157 67.5
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 1.4e-49 199.9 156 62.8
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.8e-49 199.5 156 63.5
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 2.4e-49 199.1 153 62.7
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.4e-49 199.1 156 62.2
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 3.1e-49 198.7 155 62.6
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 4.1e-49 198.4 156 60.9
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 6.9e-49 197.6 156 63.5
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 6.9e-49 197.6 156 63.5
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 6.9e-49 197.6 156 64.7
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 9.1e-49 197.2 156 64.1
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 9.1e-49 197.2 156 62.8
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 9.1e-49 197.2 156 62.8
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 9.1e-49 197.2 156 62.8
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 1.5e-48 196.4 156 64.7
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 1.5e-48 196.4 151 64.2
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 1.5e-48 196.4 156 63.5
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.4e-48 195.3 156 62.2
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 3.4e-48 195.3 145 67.6
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 5.9e-48 194.5 126 73.0
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 5.9e-48 194.5 156 62.2
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 5.9e-48 194.5 175 59.4
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 7.7e-48 194.1 156 61.5
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 7.7e-48 194.1 125 71.2
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 7.7e-48 194.1 156 61.5
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 7.7e-48 194.1 156 59.6
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.7e-47 193.0 156 61.5
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 3.8e-47 191.8 156 60.3
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 3.8e-47 191.8 156 62.2
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 1.9e-46 189.5 156 62.2
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.9e-46 189.5 156 60.3
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.9e-46 189.5 156 60.3
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 5.5e-46 188.0 156 62.2
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 7.2e-46 187.6 148 60.8
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 7.2e-46 187.6 157 61.1
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 7.2e-46 187.6 157 61.1
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 9.4e-46 187.2 156 59.6
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.2e-45 186.8 153 61.4
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 2.1e-45 186.0 156 62.2
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.1e-45 186.0 156 59.6
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 2.1e-45 186.0 156 60.9
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.1e-45 186.0 146 63.0
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 3.6e-45 185.3 156 60.3
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.1e-45 184.5 151 64.9
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 1.8e-44 183.0 153 59.5
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 2.3e-44 182.6 153 60.1
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 3.0e-44 182.2 156 57.1
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.7e-44 181.0 151 64.9
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 1.1e-43 180.3 118 72.9
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 3.3e-43 178.7 146 61.6
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 4.4e-43 178.3 215 47.9
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 1.3e-42 176.8 148 58.8
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 1.3e-42 176.8 156 57.7
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 8.2e-42 174.1 148 57.4
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 4.1e-41 171.8 153 57.5
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 2.0e-40 169.5 156 55.1
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 3.5e-40 168.7 189 49.2
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.7e-39 166.4 115 69.6
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 6.5e-39 164.5 126 62.7
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 5.5e-38 161.4 165 52.1
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 2.1e-37 159.5 156 53.2
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 4.0e-36 155.2 107 65.4
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 4.0e-36 155.2 100 75.0
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 5.2e-36 154.8 107 66.4
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 6.3e-34 147.9 147 52.4
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 1.4e-33 146.7 92 75.0
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.8e-33 146.4 101 67.3
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 2.4e-33 146.0 104 67.3
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 1.3e-31 140.2 154 49.4
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 3.8e-31 138.7 110 62.7
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 5.2e-28 128.3 126 50.0
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 7.5e-27 124.4 145 46.9
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 6.3e-26 121.3 126 50.0
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.6e-24 116.7 133 51.1
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 3.0e-20 102.4 149 42.3
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.1e-17 92.4 62 69.4
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.1e-17 92.4 62 69.4
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 4.1e-17 92.0 83 56.6
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 4.5e-16 88.6 154 35.1
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 1.3e-15 87.0 148 33.8
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.3e-15 87.0 50 74.0
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 2.3e-15 86.3 153 35.9
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 1.5e-11 73.6 121 33.9
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.9e-07 58.9 68 48.5
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 8.6e-07 57.8 68 50.0
AL4G30600 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 1.9e-06 56.6 33 75.8


User provided reference genes

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